Elsholtzia rugulosa chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · NC_050945.1 · 5–78 bp · −
psbA · NC_050945.1 · 408–1,466 bp · −
trnK-UUU · NC_050945.1 · 1,694–4,261 bp · −
matK · NC_050945.1 · 1,967–3,526 bp · −
rps16 · NC_050945.1 · 4,788–5,917 bp · −
trnQ-UUG · NC_050945.1 · 6,827–6,898 bp · −
trnS-GCU · NC_050945.1 · 8,116–8,203 bp · −
atpA · NC_050945.1 · 10,013–11,536 bp · −
atpF · NC_050945.1 · 11,637–12,889 bp · −
atpH · NC_050945.1 · 13,162–13,407 bp · −
atpI · NC_050945.1 · 14,430–15,173 bp · −
rps2 · NC_050945.1 · 15,407–16,117 bp · −
rpoC2 · NC_050945.1 · 16,348–20,529 bp · −
rpoC1 · NC_050945.1 · 20,694–23,498 bp · −
rpoB · NC_050945.1 · 23,525–26,737 bp · −
psbM · NC_050945.1 · 29,238–29,342 bp · −
trnD-GUC · NC_050945.1 · 29,712–29,785 bp · −
trnY-GUA · NC_050945.1 · 29,896–29,979 bp · −
trnS-UGA · NC_050945.1 · 34,554–34,635 bp · −
trnfM-CAU · NC_050945.1 · 35,674–35,747 bp · −
rps14 · NC_050945.1 · 35,892–36,194 bp · −
psaB · NC_050945.1 · 36,317–38,521 bp · −
psaA · NC_050945.1 · 38,547–40,799 bp · −
ycf3 · NC_050945.1 · 41,479–43,452 bp · −
rps4 · NC_050945.1 · 44,688–45,293 bp · −
trnT-UGU · NC_050945.1 · 45,697–45,769 bp · −
ndhJ · NC_050945.1 · 48,107–48,583 bp · −
ndhK · NC_050945.1 · 48,695–49,372 bp · −
ndhC · NC_050945.1 · 49,424–49,786 bp · −
trnV-UAC · NC_050945.1 · 50,747–51,396 bp · −
atpE · NC_050945.1 · 51,865–52,266 bp · −
atpB · NC_050945.1 · 52,263–53,759 bp · −
psbJ · NC_050945.1 · 63,458–63,580 bp · −
psbL · NC_050945.1 · 63,715–63,831 bp · −
psbF · NC_050945.1 · 63,855–63,974 bp · −
psbE · NC_050945.1 · 63,989–64,240 bp · −
trnW-CCA · NC_050945.1 · 65,652–65,725 bp · −
trnP-UGG · NC_050945.1 · 65,894–65,967 bp · −
rpl20 · NC_050945.1 · 67,732–68,118 bp · −
rps12 · NC_050945.1 · 68,921–69,046 bp · −
rps12 · NC_050945.1 · 96,393–97,183 bp · −
clpP · NC_050945.1 · 69,163–71,104 bp · −
psbN · NC_050945.1 · 73,438–73,569 bp · −
rpoA · NC_050945.1 · 76,967–77,974 bp · −
rps11 · NC_050945.1 · 78,046–78,462 bp · −
rpl36 · NC_050945.1 · 78,572–78,685 bp · −
infA · NC_050945.1 · 78,789–79,022 bp · −
rps8 · NC_050945.1 · 79,149–79,553 bp · −
rpl14 · NC_050945.1 · 79,727–80,095 bp · −
rpl16 · NC_050945.1 · 80,228–81,505 bp · −
rps3 · NC_050945.1 · 81,648–82,310 bp · −
rpl22 · NC_050945.1 · 82,295–82,762 bp · −
rps19 · NC_050945.1 · 82,846–83,124 bp · −
rpl2 · NC_050945.1 · 83,185–84,673 bp · −
rpl23 · NC_050945.1 · 84,692–84,973 bp · −
trnI-CAU · NC_050945.1 · 85,139–85,212 bp · −
trnL-CAA · NC_050945.1 · 92,743–92,823 bp · −
ndhB · NC_050945.1 · 93,400–95,607 bp · −
rps7 · NC_050945.1 · 95,872–96,339 bp · −
trnN-GUU · NC_050945.1 · 107,280–107,351 bp · −
ndhF · NC_050945.1 · 108,704–110,935 bp · −
ndhD · NC_050945.1 · 113,568–115,097 bp · −
psaC · NC_050945.1 · 115,194–115,439 bp · −
ndhE · NC_050945.1 · 115,690–115,995 bp · −
ndhG · NC_050945.1 · 116,222–116,752 bp · −
ndhI · NC_050945.1 · 117,098–117,604 bp · −
ndhA · NC_050945.1 · 117,686–119,792 bp · −
ndhH · NC_050945.1 · 119,794–121,029 bp · −
rps15 · NC_050945.1 · 121,075–121,347 bp · −
ycf1 · NC_050945.1 · 121,786–127,440 bp · −
trnR-ACG · NC_050945.1 · 128,290–128,363 bp · −
rrn5 · NC_050945.1 · 128,607–128,727 bp · −
rrn4.5 · NC_050945.1 · 128,988–129,090 bp · −
rrn23 · NC_050945.1 · 129,189–131,999 bp · −
trnA-UGC · NC_050945.1 · 132,159–133,042 bp · −
trnI-GAU · NC_050945.1 · 133,107–134,125 bp · −
rrn16 · NC_050945.1 · 134,428–135,918 bp · −
trnV-GAC · NC_050945.1 · 136,145–136,216 bp · −
ycf15 · NC_050945.1 · 142,392–142,709 bp · −
ycf2 · NC_050945.1 · 142,851–149,708 bp · −
psbK · NC_050945.1 · 7,286–7,471 bp · +
psbI · NC_050945.1 · 7,858–7,968 bp · +
trnG-UCC · NC_050945.1 · 8,871–9,623 bp · +
trnR-UCU · NC_050945.1 · 9,837–9,908 bp · +
trnC-GCA · NC_050945.1 · 27,906–27,976 bp · +
petN · NC_050945.1 · 28,139–28,228 bp · +
trnT-GGU · NC_050945.1 · 30,664–30,735 bp · +
psbD · NC_050945.1 · 31,877–32,938 bp · +
psbC · NC_050945.1 · 32,886–34,307 bp · +
psbZ · NC_050945.1 · 34,978–35,166 bp · +
trnG-GCC · NC_050945.1 · 35,435–35,505 bp · +
trnS-GGA · NC_050945.1 · 44,298–44,384 bp · +
trnL-UAA · NC_050945.1 · 46,487–47,055 bp · +
trnF-GAA · NC_050945.1 · 47,350–47,422 bp · +
trnM-CAU · NC_050945.1 · 51,577–51,649 bp · +
rbcL · NC_050945.1 · 54,557–56,017 bp · +
accD · NC_050945.1 · 56,684–58,165 bp · +
psaI · NC_050945.1 · 58,871–58,981 bp · +
ycf4 · NC_050945.1 · 59,440–59,994 bp · +
cemA · NC_050945.1 · 60,654–61,343 bp · +
petA · NC_050945.1 · 61,585–62,547 bp · +
petL · NC_050945.1 · 65,141–65,236 bp · +
petG · NC_050945.1 · 65,412–65,525 bp · +
psaJ · NC_050945.1 · 66,250–66,384 bp · +
rpl33 · NC_050945.1 · 66,824–67,024 bp · +
rps18 · NC_050945.1 · 67,193–67,498 bp · +
rps12 · NC_050945.1 · 137,826–138,616 bp · +
psbB · NC_050945.1 · 71,562–73,088 bp · +
psbT · NC_050945.1 · 73,271–73,372 bp · +
psbH · NC_050945.1 · 73,675–73,896 bp · +
petB · NC_050945.1 · 74,024–75,401 bp · +
petD · NC_050945.1 · 75,590–76,784 bp · +
ycf2 · NC_050945.1 · 85,301–92,158 bp · +
ycf15 · NC_050945.1 · 92,300–92,617 bp · +
trnV-GAC · NC_050945.1 · 98,793–98,864 bp · +
rrn16 · NC_050945.1 · 99,091–100,581 bp · +
trnI-GAU · NC_050945.1 · 100,884–101,902 bp · +
trnA-UGC · NC_050945.1 · 101,967–102,850 bp · +
rrn23 · NC_050945.1 · 103,010–105,820 bp · +
rrn4.5 · NC_050945.1 · 105,919–106,021 bp · +
rrn5 · NC_050945.1 · 106,282–106,402 bp · +
trnR-ACG · NC_050945.1 · 106,646–106,719 bp · +
rpl32 · NC_050945.1 · 111,325–111,495 bp · +
trnL-UAG · NC_050945.1 · 112,184–112,263 bp · +
ccsA · NC_050945.1 · 112,351–113,322 bp · +
trnN-GUU · NC_050945.1 · 127,658–127,729 bp · +
rps7 · NC_050945.1 · 138,670–139,137 bp · +
ndhB · NC_050945.1 · 139,402–141,609 bp · +
trnL-CAA · NC_050945.1 · 142,186–142,266 bp · +
trnI-CAU · NC_050945.1 · 149,797–149,870 bp · +
rpl23 · NC_050945.1 · 150,036–150,317 bp · +
rpl2 · NC_050945.1 · 150,336–151,824 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Elsholtzia rugulosa
ANNOTATED PLASTOME
NC_050945.1
151,952 bp · 131 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37988 75976 113964 151952 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
132 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 5 78 74 Locate
psbA gene − 408 1466 1059 Locate
trnK-UUU gene − 1694 4261 2568 Locate
matK gene − 1967 3526 1560 Locate
rps16 gene − 4788 5917 1130 Locate
trnQ-UUG gene − 6827 6898 72 Locate
psbK gene + 7286 7471 186 Locate
psbI gene + 7858 7968 111 Locate
trnS-GCU gene − 8116 8203 88 Locate
trnG-UCC gene + 8871 9623 753 Locate
trnR-UCU gene + 9837 9908 72 Locate
atpA gene − 10013 11536 1524 Locate
atpF gene − 11637 12889 1253 Locate
atpH gene − 13162 13407 246 Locate
atpI gene − 14430 15173 744 Locate
rps2 gene − 15407 16117 711 Locate
rpoC2 gene − 16348 20529 4182 Locate
rpoC1 gene − 20694 23498 2805 Locate
rpoB gene − 23525 26737 3213 Locate
trnC-GCA gene + 27906 27976 71 Locate
petN gene + 28139 28228 90 Locate
psbM gene − 29238 29342 105 Locate
trnD-GUC gene − 29712 29785 74 Locate
trnY-GUA gene − 29896 29979 84 Locate
trnT-GGU gene + 30664 30735 72 Locate
psbD gene + 31877 32938 1062 Locate
psbC gene + 32886 34307 1422 Locate
trnS-UGA gene − 34554 34635 82 Locate
psbZ gene + 34978 35166 189 Locate
trnG-GCC gene + 35435 35505 71 Locate
trnfM-CAU gene − 35674 35747 74 Locate
rps14 gene − 35892 36194 303 Locate
psaB gene − 36317 38521 2205 Locate
psaA gene − 38547 40799 2253 Locate
ycf3 gene − 41479 43452 1974 Locate
trnS-GGA gene + 44298 44384 87 Locate
rps4 gene − 44688 45293 606 Locate
trnT-UGU gene − 45697 45769 73 Locate
trnL-UAA gene + 46487 47055 569 Locate
trnF-GAA gene + 47350 47422 73 Locate
ndhJ gene − 48107 48583 477 Locate
ndhK gene − 48695 49372 678 Locate
ndhC gene − 49424 49786 363 Locate
trnV-UAC gene − 50747 51396 650 Locate
trnM-CAU gene + 51577 51649 73 Locate
atpE gene − 51865 52266 402 Locate
atpB gene − 52263 53759 1497 Locate
rbcL gene + 54557 56017 1461 Locate
accD gene + 56684 58165 1482 Locate
psaI gene + 58871 58981 111 Locate
ycf4 gene + 59440 59994 555 Locate
cemA gene + 60654 61343 690 Locate
petA gene + 61585 62547 963 Locate
psbJ gene − 63458 63580 123 Locate
psbL gene − 63715 63831 117 Locate
psbF gene − 63855 63974 120 Locate
psbE gene − 63989 64240 252 Locate
petL gene + 65141 65236 96 Locate
petG gene + 65412 65525 114 Locate
trnW-CCA gene − 65652 65725 74 Locate
trnP-UGG gene − 65894 65967 74 Locate
psaJ gene + 66250 66384 135 Locate
rpl33 gene + 66824 67024 201 Locate
rps18 gene + 67193 67498 306 Locate
rpl20 gene − 67732 68118 387 Locate
rps12 gene − 68921 69046 126 Locate
clpP gene − 69163 71104 1942 Locate
psbB gene + 71562 73088 1527 Locate
psbT gene + 73271 73372 102 Locate
psbN gene − 73438 73569 132 Locate
psbH gene + 73675 73896 222 Locate
petB gene + 74024 75401 1378 Locate
petD gene + 75590 76784 1195 Locate
rpoA gene − 76967 77974 1008 Locate
rps11 gene − 78046 78462 417 Locate
rpl36 gene − 78572 78685 114 Locate
infA gene − 78789 79022 234 Locate
rps8 gene − 79149 79553 405 Locate
rpl14 gene − 79727 80095 369 Locate
rpl16 gene − 80228 81505 1278 Locate
rps3 gene − 81648 82310 663 Locate
rpl22 gene − 82295 82762 468 Locate
rps19 gene − 82846 83124 279 Locate
rpl2 gene − 83185 84673 1489 Locate
rpl23 gene − 84692 84973 282 Locate
trnI-CAU gene − 85139 85212 74 Locate
ycf2 gene + 85301 92158 6858 Locate
ycf15 gene + 92300 92617 318 Locate
trnL-CAA gene − 92743 92823 81 Locate
ndhB gene − 93400 95607 2208 Locate
rps7 gene − 95872 96339 468 Locate
rps12 gene − 96393 97183 791 Locate
trnV-GAC gene + 98793 98864 72 Locate
rrn16 gene + 99091 100581 1491 Locate
trnI-GAU gene + 100884 101902 1019 Locate
trnA-UGC gene + 101967 102850 884 Locate
rrn23 gene + 103010 105820 2811 Locate
rrn4.5 gene + 105919 106021 103 Locate
rrn5 gene + 106282 106402 121 Locate
trnR-ACG gene + 106646 106719 74 Locate
trnN-GUU gene − 107280 107351 72 Locate
ndhF gene − 108704 110935 2232 Locate
rpl32 gene + 111325 111495 171 Locate
trnL-UAG gene + 112184 112263 80 Locate
ccsA gene + 112351 113322 972 Locate
ndhD gene − 113568 115097 1530 Locate
psaC gene − 115194 115439 246 Locate
ndhE gene − 115690 115995 306 Locate
ndhG gene − 116222 116752 531 Locate
ndhI gene − 117098 117604 507 Locate
ndhA gene − 117686 119792 2107 Locate
ndhH gene − 119794 121029 1236 Locate
rps15 gene − 121075 121347 273 Locate
ycf1 gene − 121786 127440 5655 Locate
trnN-GUU gene + 127658 127729 72 Locate
trnR-ACG gene − 128290 128363 74 Locate
rrn5 gene − 128607 128727 121 Locate
rrn4.5 gene − 128988 129090 103 Locate
rrn23 gene − 129189 131999 2811 Locate
trnA-UGC gene − 132159 133042 884 Locate
trnI-GAU gene − 133107 134125 1019 Locate
rrn16 gene − 134428 135918 1491 Locate
trnV-GAC gene − 136145 136216 72 Locate
rps12 gene + 137826 138616 791 Locate
rps7 gene + 138670 139137 468 Locate
ndhB gene + 139402 141609 2208 Locate
trnL-CAA gene + 142186 142266 81 Locate
ycf15 gene − 142392 142709 318 Locate
ycf2 gene − 142851 149708 6858 Locate
trnI-CAU gene + 149797 149870 74 Locate
rpl23 gene + 150036 150317 282 Locate
rpl2 gene + 150336 151824 1489 Locate
Status Available
Accession NC_050945.1
Length 151,952 bp
GC content 37.9%
Annotated genes 131
Gene sequence records 8
Translation Rna 36 Photosystem Ii 15 Other 14 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources