Elsholtzia stachyodes chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PP357157.1 · 12–85 bp · −
psbA · PP357157.1 · 415–1,473 bp · −
trnK-UUU · PP357157.1 · 1,705–4,270 bp · −
matK · PP357157.1 · 1,978–3,537 bp · −
rps16 · PP357157.1 · 4,793–5,921 bp · −
trnQ-UUG · PP357157.1 · 6,831–6,902 bp · −
trnS-GCU · PP357157.1 · 8,124–8,211 bp · −
atpA · PP357157.1 · 10,013–11,536 bp · −
atpF · PP357157.1 · 11,638–12,888 bp · −
atpH · PP357157.1 · 13,164–13,409 bp · −
atpI · PP357157.1 · 14,442–15,185 bp · −
rps2 · PP357157.1 · 15,419–16,129 bp · −
rpoC2 · PP357157.1 · 16,362–20,543 bp · −
rpoC1 · PP357157.1 · 20,708–23,512 bp · −
rpoB · PP357157.1 · 23,539–26,751 bp · −
psbM · PP357157.1 · 29,264–29,368 bp · −
trnD-GUC · PP357157.1 · 29,734–29,807 bp · −
trnY-GUA · PP357157.1 · 29,918–30,001 bp · −
trnE-UUC · PP357157.1 · 30,079–30,151 bp · −
trnS-UGA · PP357157.1 · 34,574–34,655 bp · −
trnfM-CAU · PP357157.1 · 35,708–35,781 bp · −
rps14 · PP357157.1 · 35,926–36,228 bp · −
psaB · PP357157.1 · 36,351–38,555 bp · −
psaA · PP357157.1 · 38,581–40,833 bp · −
ycf3 · PP357157.1 · 41,512–43,488 bp · −
rps4 · PP357157.1 · 44,738–45,343 bp · −
trnT-UGU · PP357157.1 · 45,745–45,817 bp · −
ndhJ · PP357157.1 · 48,153–48,629 bp · −
ndhK · PP357157.1 · 48,741–49,418 bp · −
ndhC · PP357157.1 · 49,470–49,832 bp · −
trnV-UAC · PP357157.1 · 50,782–51,432 bp · −
atpE · PP357157.1 · 51,901–52,302 bp · −
atpB · PP357157.1 · 52,299–53,795 bp · −
psbJ · PP357157.1 · 63,493–63,615 bp · −
psbL · PP357157.1 · 63,750–63,866 bp · −
psbF · PP357157.1 · 63,890–64,009 bp · −
psbE · PP357157.1 · 64,024–64,275 bp · −
trnW-CCA · PP357157.1 · 65,687–65,760 bp · −
trnP-UGG · PP357157.1 · 65,930–66,003 bp · −
rpl20 · PP357157.1 · 67,781–68,167 bp · −
rps12 · PP357157.1 · 68,971–69,096 bp · −
rps12 · PP357157.1 · 96,455–97,245 bp · −
clpP · PP357157.1 · 69,222–71,171 bp · −
psbN · PP357157.1 · 73,507–73,638 bp · −
rpoA · PP357157.1 · 77,037–78,044 bp · −
rps11 · PP357157.1 · 78,116–78,532 bp · −
rpl36 · PP357157.1 · 78,642–78,755 bp · −
infA · PP357157.1 · 78,859–79,092 bp · −
rps8 · PP357157.1 · 79,219–79,623 bp · −
rpl14 · PP357157.1 · 79,793–80,161 bp · −
rpl16 · PP357157.1 · 80,294–81,566 bp · −
rps3 · PP357157.1 · 81,709–82,371 bp · −
rpl22 · PP357157.1 · 82,356–82,823 bp · −
rps19 · PP357157.1 · 82,907–83,185 bp · −
rpl2 · PP357157.1 · 83,246–84,734 bp · −
rpl23 · PP357157.1 · 84,753–85,034 bp · −
trnI-CAU · PP357157.1 · 85,200–85,273 bp · −
trnL-CAA · PP357157.1 · 92,805–92,885 bp · −
ndhB · PP357157.1 · 93,462–95,615 bp · −
rps7 · PP357157.1 · 95,934–96,401 bp · −
trnN-GUU · PP357157.1 · 107,337–107,408 bp · −
ndhF · PP357157.1 · 108,761–110,992 bp · −
ndhD · PP357157.1 · 113,627–115,156 bp · −
psaC · PP357157.1 · 115,253–115,498 bp · −
ndhE · PP357157.1 · 115,749–116,054 bp · −
ndhG · PP357157.1 · 116,281–116,811 bp · −
ndhI · PP357157.1 · 117,156–117,662 bp · −
ndhA · PP357157.1 · 117,744–119,862 bp · −
ndhH · PP357157.1 · 119,864–121,075 bp · −
rps15 · PP357157.1 · 121,145–121,417 bp · −
ycf1 · PP357157.1 · 121,849–127,497 bp · −
trnR-ACG · PP357157.1 · 128,348–128,421 bp · −
rrn5 · PP357157.1 · 128,665–128,785 bp · −
rrn4.5 · PP357157.1 · 129,046–129,148 bp · −
rrn23 · PP357157.1 · 129,248–132,057 bp · −
trnA-UGC · PP357157.1 · 132,217–133,100 bp · −
trnI-GAU · PP357157.1 · 133,165–134,183 bp · −
rrn16 · PP357157.1 · 134,486–135,976 bp · −
trnV-GAC · PP357157.1 · 136,203–136,274 bp · −
ycf2 · PP357157.1 · 142,904–149,761 bp · −
psbK · PP357157.1 · 7,281–7,475 bp · +
psbI · PP357157.1 · 7,862–7,972 bp · +
trnG-UCC · PP357157.1 · 8,886–9,638 bp · +
trnR-UCU · PP357157.1 · 9,837–9,908 bp · +
trnC-GCA · PP357157.1 · 27,927–27,997 bp · +
petN · PP357157.1 · 28,154–28,249 bp · +
trnT-GGU · PP357157.1 · 30,682–30,753 bp · +
psbD · PP357157.1 · 31,889–32,950 bp · +
psbC · PP357157.1 · 32,898–34,319 bp · +
psbZ · PP357157.1 · 34,999–35,187 bp · +
trnG-GCC · PP357157.1 · 35,462–35,532 bp · +
trnS-GGA · PP357157.1 · 44,348–44,434 bp · +
trnL-UAA · PP357157.1 · 46,539–47,107 bp · +
trnF-GAA · PP357157.1 · 47,402–47,474 bp · +
trnM-CAU · PP357157.1 · 51,613–51,685 bp · +
rbcL · PP357157.1 · 54,593–56,053 bp · +
accD · PP357157.1 · 56,720–58,201 bp · +
psaI · PP357157.1 · 58,908–59,018 bp · +
ycf4 · PP357157.1 · 59,479–60,033 bp · +
cemA · PP357157.1 · 60,693–61,382 bp · +
petA · PP357157.1 · 61,624–62,586 bp · +
petL · PP357157.1 · 65,176–65,271 bp · +
petG · PP357157.1 · 65,447–65,560 bp · +
psaJ · PP357157.1 · 66,286–66,420 bp · +
rpl33 · PP357157.1 · 66,860–67,060 bp · +
rps18 · PP357157.1 · 67,230–67,535 bp · +
rps12 · PP357157.1 · 137,878–138,668 bp · +
psbB · PP357157.1 · 71,629–73,155 bp · +
psbT · PP357157.1 · 73,340–73,441 bp · +
psbH · PP357157.1 · 73,744–73,965 bp · +
petB · PP357157.1 · 74,093–75,471 bp · +
petD · PP357157.1 · 75,660–76,854 bp · +
ycf2 · PP357157.1 · 85,362–92,219 bp · +
trnV-GAC · PP357157.1 · 98,849–98,920 bp · +
rrn16 · PP357157.1 · 99,147–100,637 bp · +
trnI-GAU · PP357157.1 · 100,940–101,958 bp · +
trnA-UGC · PP357157.1 · 102,023–102,906 bp · +
rrn23 · PP357157.1 · 103,066–105,875 bp · +
rrn4.5 · PP357157.1 · 105,975–106,077 bp · +
rrn5 · PP357157.1 · 106,338–106,458 bp · +
trnR-ACG · PP357157.1 · 106,702–106,775 bp · +
rpl32 · PP357157.1 · 111,384–111,554 bp · +
trnL-UAG · PP357157.1 · 112,242–112,321 bp · +
ccsA · PP357157.1 · 112,409–113,380 bp · +
trnN-GUU · PP357157.1 · 127,715–127,786 bp · +
rps7 · PP357157.1 · 138,722–139,189 bp · +
ndhB · PP357157.1 · 139,508–141,661 bp · +
trnL-CAA · PP357157.1 · 142,238–142,318 bp · +
trnI-CAU · PP357157.1 · 149,850–149,923 bp · +
rpl23 · PP357157.1 · 150,089–150,370 bp · +
rpl2 · PP357157.1 · 150,389–151,877 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Elsholtzia stachyodes
ANNOTATED PLASTOME
PP357157.1
151,980 bp · 130 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37995 75990 113985 151980 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
131 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 12 85 74 Locate
psbA gene − 415 1473 1059 Locate
trnK-UUU gene − 1705 4270 2566 Locate
matK gene − 1978 3537 1560 Locate
rps16 gene − 4793 5921 1129 Locate
trnQ-UUG gene − 6831 6902 72 Locate
psbK gene + 7281 7475 195 Locate
psbI gene + 7862 7972 111 Locate
trnS-GCU gene − 8124 8211 88 Locate
trnG-UCC gene + 8886 9638 753 Locate
trnR-UCU gene + 9837 9908 72 Locate
atpA gene − 10013 11536 1524 Locate
atpF gene − 11638 12888 1251 Locate
atpH gene − 13164 13409 246 Locate
atpI gene − 14442 15185 744 Locate
rps2 gene − 15419 16129 711 Locate
rpoC2 gene − 16362 20543 4182 Locate
rpoC1 gene − 20708 23512 2805 Locate
rpoB gene − 23539 26751 3213 Locate
trnC-GCA gene + 27927 27997 71 Locate
petN gene + 28154 28249 96 Locate
psbM gene − 29264 29368 105 Locate
trnD-GUC gene − 29734 29807 74 Locate
trnY-GUA gene − 29918 30001 84 Locate
trnE-UUC gene − 30079 30151 73 Locate
trnT-GGU gene + 30682 30753 72 Locate
psbD gene + 31889 32950 1062 Locate
psbC gene + 32898 34319 1422 Locate
trnS-UGA gene − 34574 34655 82 Locate
psbZ gene + 34999 35187 189 Locate
trnG-GCC gene + 35462 35532 71 Locate
trnfM-CAU gene − 35708 35781 74 Locate
rps14 gene − 35926 36228 303 Locate
psaB gene − 36351 38555 2205 Locate
psaA gene − 38581 40833 2253 Locate
ycf3 gene − 41512 43488 1977 Locate
trnS-GGA gene + 44348 44434 87 Locate
rps4 gene − 44738 45343 606 Locate
trnT-UGU gene − 45745 45817 73 Locate
trnL-UAA gene + 46539 47107 569 Locate
trnF-GAA gene + 47402 47474 73 Locate
ndhJ gene − 48153 48629 477 Locate
ndhK gene − 48741 49418 678 Locate
ndhC gene − 49470 49832 363 Locate
trnV-UAC gene − 50782 51432 651 Locate
trnM-CAU gene + 51613 51685 73 Locate
atpE gene − 51901 52302 402 Locate
atpB gene − 52299 53795 1497 Locate
rbcL gene + 54593 56053 1461 Locate
accD gene + 56720 58201 1482 Locate
psaI gene + 58908 59018 111 Locate
ycf4 gene + 59479 60033 555 Locate
cemA gene + 60693 61382 690 Locate
petA gene + 61624 62586 963 Locate
psbJ gene − 63493 63615 123 Locate
psbL gene − 63750 63866 117 Locate
psbF gene − 63890 64009 120 Locate
psbE gene − 64024 64275 252 Locate
petL gene + 65176 65271 96 Locate
petG gene + 65447 65560 114 Locate
trnW-CCA gene − 65687 65760 74 Locate
trnP-UGG gene − 65930 66003 74 Locate
psaJ gene + 66286 66420 135 Locate
rpl33 gene + 66860 67060 201 Locate
rps18 gene + 67230 67535 306 Locate
rpl20 gene − 67781 68167 387 Locate
rps12 gene − 68971 69096 126 Locate
clpP gene − 69222 71171 1950 Locate
psbB gene + 71629 73155 1527 Locate
psbT gene + 73340 73441 102 Locate
psbN gene − 73507 73638 132 Locate
psbH gene + 73744 73965 222 Locate
petB gene + 74093 75471 1379 Locate
petD gene + 75660 76854 1195 Locate
rpoA gene − 77037 78044 1008 Locate
rps11 gene − 78116 78532 417 Locate
rpl36 gene − 78642 78755 114 Locate
infA gene − 78859 79092 234 Locate
rps8 gene − 79219 79623 405 Locate
rpl14 gene − 79793 80161 369 Locate
rpl16 gene − 80294 81566 1273 Locate
rps3 gene − 81709 82371 663 Locate
rpl22 gene − 82356 82823 468 Locate
rps19 gene − 82907 83185 279 Locate
rpl2 gene − 83246 84734 1489 Locate
rpl23 gene − 84753 85034 282 Locate
trnI-CAU gene − 85200 85273 74 Locate
ycf2 gene + 85362 92219 6858 Locate
trnL-CAA gene − 92805 92885 81 Locate
ndhB gene − 93462 95615 2154 Locate
rps7 gene − 95934 96401 468 Locate
rps12 gene − 96455 97245 791 Locate
trnV-GAC gene + 98849 98920 72 Locate
rrn16 gene + 99147 100637 1491 Locate
trnI-GAU gene + 100940 101958 1019 Locate
trnA-UGC gene + 102023 102906 884 Locate
rrn23 gene + 103066 105875 2810 Locate
rrn4.5 gene + 105975 106077 103 Locate
rrn5 gene + 106338 106458 121 Locate
trnR-ACG gene + 106702 106775 74 Locate
trnN-GUU gene − 107337 107408 72 Locate
ndhF gene − 108761 110992 2232 Locate
rpl32 gene + 111384 111554 171 Locate
trnL-UAG gene + 112242 112321 80 Locate
ccsA gene + 112409 113380 972 Locate
ndhD gene − 113627 115156 1530 Locate
psaC gene − 115253 115498 246 Locate
ndhE gene − 115749 116054 306 Locate
ndhG gene − 116281 116811 531 Locate
ndhI gene − 117156 117662 507 Locate
ndhA gene − 117744 119862 2119 Locate
ndhH gene − 119864 121075 1212 Locate
rps15 gene − 121145 121417 273 Locate
ycf1 gene − 121849 127497 5649 Locate
trnN-GUU gene + 127715 127786 72 Locate
trnR-ACG gene − 128348 128421 74 Locate
rrn5 gene − 128665 128785 121 Locate
rrn4.5 gene − 129046 129148 103 Locate
rrn23 gene − 129248 132057 2810 Locate
trnA-UGC gene − 132217 133100 884 Locate
trnI-GAU gene − 133165 134183 1019 Locate
rrn16 gene − 134486 135976 1491 Locate
trnV-GAC gene − 136203 136274 72 Locate
rps12 gene + 137878 138668 791 Locate
rps7 gene + 138722 139189 468 Locate
ndhB gene + 139508 141661 2154 Locate
trnL-CAA gene + 142238 142318 81 Locate
ycf2 gene − 142904 149761 6858 Locate
trnI-CAU gene + 149850 149923 74 Locate
rpl23 gene + 150089 150370 282 Locate
rpl2 gene + 150389 151877 1489 Locate
Status Available
Accession PP357157.1
Length 151,980 bp
GC content 37.9%
Annotated genes 130
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 12 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources