Elsholtzia stauntonii chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PP357164.1 · 11–84 bp · −
psbA · PP357164.1 · 402–1,460 bp · −
trnK-UUU · PP357164.1 · 1,689–4,271 bp · −
matK · PP357164.1 · 1,997–3,538 bp · −
rps16 · PP357164.1 · 4,795–5,922 bp · −
trnQ-UUG · PP357164.1 · 6,726–6,797 bp · −
trnS-GCU · PP357164.1 · 8,009–8,096 bp · −
atpA · PP357164.1 · 9,874–11,397 bp · −
atpF · PP357164.1 · 11,497–12,746 bp · −
atpH · PP357164.1 · 13,020–13,265 bp · −
atpI · PP357164.1 · 13,896–14,639 bp · −
rps2 · PP357164.1 · 14,872–15,582 bp · −
rpoC2 · PP357164.1 · 15,817–20,001 bp · −
rpoC1 · PP357164.1 · 20,166–22,971 bp · −
rpoB · PP357164.1 · 22,998–26,210 bp · −
psbM · PP357164.1 · 28,740–28,844 bp · −
trnD-GUC · PP357164.1 · 29,372–29,445 bp · −
trnY-GUA · PP357164.1 · 29,556–29,639 bp · −
trnE-UUC · PP357164.1 · 29,713–29,785 bp · −
trnS-UGA · PP357164.1 · 34,234–34,315 bp · −
trnfM-CAU · PP357164.1 · 35,361–35,434 bp · −
rps14 · PP357164.1 · 35,579–35,881 bp · −
psaB · PP357164.1 · 36,004–38,208 bp · −
psaA · PP357164.1 · 38,234–40,486 bp · −
ycf3 · PP357164.1 · 41,147–43,127 bp · −
rps4 · PP357164.1 · 44,363–44,968 bp · −
trnT-UGU · PP357164.1 · 45,341–45,413 bp · −
ndhJ · PP357164.1 · 47,708–48,184 bp · −
ndhK · PP357164.1 · 48,296–48,973 bp · −
ndhC · PP357164.1 · 49,025–49,387 bp · −
trnV-UAC · PP357164.1 · 50,335–50,984 bp · −
atpE · PP357164.1 · 51,455–51,856 bp · −
atpB · PP357164.1 · 51,853–53,349 bp · −
psbJ · PP357164.1 · 63,141–63,263 bp · −
psbL · PP357164.1 · 63,398–63,514 bp · −
psbF · PP357164.1 · 63,538–63,657 bp · −
psbE · PP357164.1 · 63,672–63,923 bp · −
trnW-CCA · PP357164.1 · 65,349–65,422 bp · −
trnP-UGG · PP357164.1 · 65,585–65,658 bp · −
rpl20 · PP357164.1 · 67,461–67,847 bp · −
rps12 · PP357164.1 · 68,652–68,777 bp · −
rps12 · PP357164.1 · 96,112–96,902 bp · −
clpP · PP357164.1 · 68,893–70,837 bp · −
psbN · PP357164.1 · 73,172–73,303 bp · −
rpoA · PP357164.1 · 76,691–77,698 bp · −
rps11 · PP357164.1 · 77,770–78,186 bp · −
rpl36 · PP357164.1 · 78,297–78,410 bp · −
infA · PP357164.1 · 78,514–78,747 bp · −
rps8 · PP357164.1 · 78,875–79,279 bp · −
rpl14 · PP357164.1 · 79,458–79,826 bp · −
rpl16 · PP357164.1 · 79,959–81,239 bp · −
rps3 · PP357164.1 · 81,382–82,044 bp · −
rpl22 · PP357164.1 · 82,029–82,496 bp · −
rps19 · PP357164.1 · 82,562–82,840 bp · −
rpl2 · PP357164.1 · 82,903–84,391 bp · −
rpl23 · PP357164.1 · 84,410–84,691 bp · −
trnI-CAU · PP357164.1 · 84,857–84,930 bp · −
trnL-CAA · PP357164.1 · 92,462–92,542 bp · −
ndhB · PP357164.1 · 93,119–95,272 bp · −
rps7 · PP357164.1 · 95,591–96,058 bp · −
trnN-GUU · PP357164.1 · 106,980–107,051 bp · −
ndhF · PP357164.1 · 108,404–110,635 bp · −
ndhD · PP357164.1 · 113,287–114,816 bp · −
psaC · PP357164.1 · 114,913–115,158 bp · −
ndhE · PP357164.1 · 115,409–115,714 bp · −
ndhG · PP357164.1 · 115,934–116,464 bp · −
ndhI · PP357164.1 · 116,805–117,311 bp · −
ndhA · PP357164.1 · 117,392–119,520 bp · −
ndhH · PP357164.1 · 119,522–120,733 bp · −
rps15 · PP357164.1 · 120,803–121,075 bp · −
ycf1 · PP357164.1 · 121,499–127,108 bp · −
trnR-ACG · PP357164.1 · 127,951–128,024 bp · −
rrn5 · PP357164.1 · 128,268–128,388 bp · −
rrn4.5 · PP357164.1 · 128,649–128,751 bp · −
rrn23 · PP357164.1 · 128,851–131,660 bp · −
trnA-UGC · PP357164.1 · 131,828–132,711 bp · −
trnI-GAU · PP357164.1 · 132,776–133,794 bp · −
rrn16 · PP357164.1 · 134,093–135,583 bp · −
trnV-GAC · PP357164.1 · 135,810–135,881 bp · −
ycf2 · PP357164.1 · 142,510–149,358 bp · −
psbK · PP357164.1 · 7,171–7,365 bp · +
psbI · PP357164.1 · 7,756–7,866 bp · +
trnG-UCC · PP357164.1 · 8,776–9,512 bp · +
trnR-UCU · PP357164.1 · 9,698–9,769 bp · +
trnC-GCA · PP357164.1 · 27,395–27,465 bp · +
petN · PP357164.1 · 27,622–27,717 bp · +
trnT-GGU · PP357164.1 · 30,332–30,403 bp · +
psbD · PP357164.1 · 31,557–32,618 bp · +
psbC · PP357164.1 · 32,566–33,987 bp · +
psbZ · PP357164.1 · 34,663–34,851 bp · +
trnG-GCC · PP357164.1 · 35,116–35,186 bp · +
trnS-GGA · PP357164.1 · 43,973–44,059 bp · +
trnL-UAA · PP357164.1 · 46,090–46,664 bp · +
trnF-GAA · PP357164.1 · 46,961–47,033 bp · +
trnM-CAU · PP357164.1 · 51,165–51,237 bp · +
rbcL · PP357164.1 · 54,130–55,590 bp · +
accD · PP357164.1 · 56,308–57,789 bp · +
psaI · PP357164.1 · 58,483–58,593 bp · +
ycf4 · PP357164.1 · 59,045–59,599 bp · +
cemA · PP357164.1 · 60,266–60,955 bp · +
petA · PP357164.1 · 61,194–62,156 bp · +
petL · PP357164.1 · 64,836–64,931 bp · +
petG · PP357164.1 · 65,108–65,221 bp · +
psaJ · PP357164.1 · 65,952–66,086 bp · +
rpl33 · PP357164.1 · 66,548–66,748 bp · +
rps18 · PP357164.1 · 66,918–67,223 bp · +
rps12 · PP357164.1 · 137,475–138,265 bp · +
psbB · PP357164.1 · 71,295–72,821 bp · +
psbT · PP357164.1 · 73,005–73,106 bp · +
psbH · PP357164.1 · 73,407–73,628 bp · +
petB · PP357164.1 · 73,756–75,125 bp · +
petD · PP357164.1 · 75,314–76,508 bp · +
ycf2 · PP357164.1 · 85,019–91,867 bp · +
trnV-GAC · PP357164.1 · 98,496–98,567 bp · +
rrn16 · PP357164.1 · 98,794–100,284 bp · +
trnI-GAU · PP357164.1 · 100,583–101,601 bp · +
trnA-UGC · PP357164.1 · 101,666–102,549 bp · +
rrn23 · PP357164.1 · 102,717–105,526 bp · +
rrn4.5 · PP357164.1 · 105,626–105,728 bp · +
rrn5 · PP357164.1 · 105,989–106,109 bp · +
trnR-ACG · PP357164.1 · 106,353–106,426 bp · +
rpl32 · PP357164.1 · 111,043–111,213 bp · +
trnL-UAG · PP357164.1 · 111,903–111,982 bp · +
ccsA · PP357164.1 · 112,070–113,041 bp · +
trnN-GUU · PP357164.1 · 127,326–127,397 bp · +
rps7 · PP357164.1 · 138,319–138,786 bp · +
ndhB · PP357164.1 · 139,105–141,258 bp · +
trnL-CAA · PP357164.1 · 141,835–141,915 bp · +
trnI-CAU · PP357164.1 · 149,447–149,520 bp · +
rpl23 · PP357164.1 · 149,686–149,967 bp · +
rpl2 · PP357164.1 · 149,986–151,474 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Elsholtzia stauntonii
ANNOTATED PLASTOME
PP357164.1
151,579 bp · 130 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37895 75790 113684 151579 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
131 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 11 84 74 Locate
psbA gene − 402 1460 1059 Locate
trnK-UUU gene − 1689 4271 2583 Locate
matK gene − 1997 3538 1542 Locate
rps16 gene − 4795 5922 1128 Locate
trnQ-UUG gene − 6726 6797 72 Locate
psbK gene + 7171 7365 195 Locate
psbI gene + 7756 7866 111 Locate
trnS-GCU gene − 8009 8096 88 Locate
trnG-UCC gene + 8776 9512 737 Locate
trnR-UCU gene + 9698 9769 72 Locate
atpA gene − 9874 11397 1524 Locate
atpF gene − 11497 12746 1250 Locate
atpH gene − 13020 13265 246 Locate
atpI gene − 13896 14639 744 Locate
rps2 gene − 14872 15582 711 Locate
rpoC2 gene − 15817 20001 4185 Locate
rpoC1 gene − 20166 22971 2806 Locate
rpoB gene − 22998 26210 3213 Locate
trnC-GCA gene + 27395 27465 71 Locate
petN gene + 27622 27717 96 Locate
psbM gene − 28740 28844 105 Locate
trnD-GUC gene − 29372 29445 74 Locate
trnY-GUA gene − 29556 29639 84 Locate
trnE-UUC gene − 29713 29785 73 Locate
trnT-GGU gene + 30332 30403 72 Locate
psbD gene + 31557 32618 1062 Locate
psbC gene + 32566 33987 1422 Locate
trnS-UGA gene − 34234 34315 82 Locate
psbZ gene + 34663 34851 189 Locate
trnG-GCC gene + 35116 35186 71 Locate
trnfM-CAU gene − 35361 35434 74 Locate
rps14 gene − 35579 35881 303 Locate
psaB gene − 36004 38208 2205 Locate
psaA gene − 38234 40486 2253 Locate
ycf3 gene − 41147 43127 1981 Locate
trnS-GGA gene + 43973 44059 87 Locate
rps4 gene − 44363 44968 606 Locate
trnT-UGU gene − 45341 45413 73 Locate
trnL-UAA gene + 46090 46664 575 Locate
trnF-GAA gene + 46961 47033 73 Locate
ndhJ gene − 47708 48184 477 Locate
ndhK gene − 48296 48973 678 Locate
ndhC gene − 49025 49387 363 Locate
trnV-UAC gene − 50335 50984 650 Locate
trnM-CAU gene + 51165 51237 73 Locate
atpE gene − 51455 51856 402 Locate
atpB gene − 51853 53349 1497 Locate
rbcL gene + 54130 55590 1461 Locate
accD gene + 56308 57789 1482 Locate
psaI gene + 58483 58593 111 Locate
ycf4 gene + 59045 59599 555 Locate
cemA gene + 60266 60955 690 Locate
petA gene + 61194 62156 963 Locate
psbJ gene − 63141 63263 123 Locate
psbL gene − 63398 63514 117 Locate
psbF gene − 63538 63657 120 Locate
psbE gene − 63672 63923 252 Locate
petL gene + 64836 64931 96 Locate
petG gene + 65108 65221 114 Locate
trnW-CCA gene − 65349 65422 74 Locate
trnP-UGG gene − 65585 65658 74 Locate
psaJ gene + 65952 66086 135 Locate
rpl33 gene + 66548 66748 201 Locate
rps18 gene + 66918 67223 306 Locate
rpl20 gene − 67461 67847 387 Locate
rps12 gene − 68652 68777 126 Locate
clpP gene − 68893 70837 1945 Locate
psbB gene + 71295 72821 1527 Locate
psbT gene + 73005 73106 102 Locate
psbN gene − 73172 73303 132 Locate
psbH gene + 73407 73628 222 Locate
petB gene + 73756 75125 1370 Locate
petD gene + 75314 76508 1195 Locate
rpoA gene − 76691 77698 1008 Locate
rps11 gene − 77770 78186 417 Locate
rpl36 gene − 78297 78410 114 Locate
infA gene − 78514 78747 234 Locate
rps8 gene − 78875 79279 405 Locate
rpl14 gene − 79458 79826 369 Locate
rpl16 gene − 79959 81239 1281 Locate
rps3 gene − 81382 82044 663 Locate
rpl22 gene − 82029 82496 468 Locate
rps19 gene − 82562 82840 279 Locate
rpl2 gene − 82903 84391 1489 Locate
rpl23 gene − 84410 84691 282 Locate
trnI-CAU gene − 84857 84930 74 Locate
ycf2 gene + 85019 91867 6849 Locate
trnL-CAA gene − 92462 92542 81 Locate
ndhB gene − 93119 95272 2154 Locate
rps7 gene − 95591 96058 468 Locate
rps12 gene − 96112 96902 791 Locate
trnV-GAC gene + 98496 98567 72 Locate
rrn16 gene + 98794 100284 1491 Locate
trnI-GAU gene + 100583 101601 1019 Locate
trnA-UGC gene + 101666 102549 884 Locate
rrn23 gene + 102717 105526 2810 Locate
rrn4.5 gene + 105626 105728 103 Locate
rrn5 gene + 105989 106109 121 Locate
trnR-ACG gene + 106353 106426 74 Locate
trnN-GUU gene − 106980 107051 72 Locate
ndhF gene − 108404 110635 2232 Locate
rpl32 gene + 111043 111213 171 Locate
trnL-UAG gene + 111903 111982 80 Locate
ccsA gene + 112070 113041 972 Locate
ndhD gene − 113287 114816 1530 Locate
psaC gene − 114913 115158 246 Locate
ndhE gene − 115409 115714 306 Locate
ndhG gene − 115934 116464 531 Locate
ndhI gene − 116805 117311 507 Locate
ndhA gene − 117392 119520 2129 Locate
ndhH gene − 119522 120733 1212 Locate
rps15 gene − 120803 121075 273 Locate
ycf1 gene − 121499 127108 5610 Locate
trnN-GUU gene + 127326 127397 72 Locate
trnR-ACG gene − 127951 128024 74 Locate
rrn5 gene − 128268 128388 121 Locate
rrn4.5 gene − 128649 128751 103 Locate
rrn23 gene − 128851 131660 2810 Locate
trnA-UGC gene − 131828 132711 884 Locate
trnI-GAU gene − 132776 133794 1019 Locate
rrn16 gene − 134093 135583 1491 Locate
trnV-GAC gene − 135810 135881 72 Locate
rps12 gene + 137475 138265 791 Locate
rps7 gene + 138319 138786 468 Locate
ndhB gene + 139105 141258 2154 Locate
trnL-CAA gene + 141835 141915 81 Locate
ycf2 gene − 142510 149358 6849 Locate
trnI-CAU gene + 149447 149520 74 Locate
rpl23 gene + 149686 149967 282 Locate
rpl2 gene + 149986 151474 1489 Locate
Status Available
Accession PP357164.1
Length 151,579 bp
GC content 38.0%
Annotated genes 130
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 12 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources