Gmelina hainanensis chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · NC_053620.1 · 5–78 bp · −
psbA · NC_053620.1 · 418–1,476 bp · −
trnK-UUU · NC_053620.1 · 1,709–4,289 bp · −
matK · NC_053620.1 · 2,015–3,550 bp · −
rps16 · NC_053620.1 · 5,193–6,334 bp · −
trnQ-UUG · NC_053620.1 · 7,508–7,579 bp · −
trnS-GCU · NC_053620.1 · 8,725–8,812 bp · −
atpA · NC_053620.1 · 10,703–12,226 bp · −
atpF · NC_053620.1 · 12,332–13,594 bp · −
atpH · NC_053620.1 · 14,013–14,258 bp · −
atpI · NC_053620.1 · 15,268–16,011 bp · −
rps2 · NC_053620.1 · 16,242–16,952 bp · −
rpoC2 · NC_053620.1 · 17,178–21,527 bp · −
rpoC1 · NC_053620.1 · 21,508–24,391 bp · −
rpoB · NC_053620.1 · 24,418–27,630 bp · −
psbM · NC_053620.1 · 30,758–30,862 bp · −
trnD-GUC · NC_053620.1 · 31,384–31,457 bp · −
trnY-GUA · NC_053620.1 · 31,566–31,649 bp · −
trnE-UUC · NC_053620.1 · 31,709–31,781 bp · −
trnS-UGA · NC_053620.1 · 36,524–36,616 bp · −
trnfM-CAU · NC_053620.1 · 37,667–37,740 bp · −
rps14 · NC_053620.1 · 37,890–38,192 bp · −
psaB · NC_053620.1 · 38,315–40,519 bp · −
psaA · NC_053620.1 · 40,545–42,797 bp · −
ycf3 · NC_053620.1 · 43,504–45,449 bp · −
rps4 · NC_053620.1 · 46,686–47,291 bp · −
trnT-UGU · NC_053620.1 · 47,621–47,693 bp · −
ndhJ · NC_053620.1 · 50,040–50,516 bp · −
ndhK · NC_053620.1 · 50,618–51,295 bp · −
ndhC · NC_053620.1 · 51,348–51,710 bp · −
trnV-UAC · NC_053620.1 · 52,712–53,363 bp · −
atpE · NC_053620.1 · 53,833–54,234 bp · −
atpB · NC_053620.1 · 54,231–55,727 bp · −
psbJ · NC_053620.1 · 65,414–65,536 bp · −
psbL · NC_053620.1 · 65,670–65,891 bp · −
psbF · NC_053620.1 · 65,810–65,929 bp · −
psbE · NC_053620.1 · 65,944–66,195 bp · −
trnW-CCA · NC_053620.1 · 67,630–67,703 bp · −
trnP-GGG · NC_053620.1 · 67,867–67,940 bp · −
rpl20 · NC_053620.1 · 69,752–70,138 bp · −
rps12 · NC_053620.1 · 70,937–71,050 bp · −
rps12 · NC_053620.1 · 98,383–99,176 bp · −
clpP · NC_053620.1 · 71,192–73,127 bp · −
psbN · NC_053620.1 · 75,471–75,602 bp · −
rpoA · NC_053620.1 · 78,992–79,996 bp · −
rps11 · NC_053620.1 · 80,068–80,484 bp · −
rpl36 · NC_053620.1 · 80,586–80,699 bp · −
infA · NC_053620.1 · 80,795–81,028 bp · −
rps8 · NC_053620.1 · 81,153–81,557 bp · −
rpl14 · NC_053620.1 · 81,747–82,115 bp · −
rpl16 · NC_053620.1 · 82,271–83,555 bp · −
rps3 · NC_053620.1 · 83,697–84,359 bp · −
rpl22 · NC_053620.1 · 84,344–84,817 bp · −
rps19 · NC_053620.1 · 84,884–85,162 bp · −
rpl2 · NC_053620.1 · 85,225–86,716 bp · −
rpl23 · NC_053620.1 · 86,740–87,021 bp · −
trnI-CAU · NC_053620.1 · 87,187–87,260 bp · −
trnL-CAA · NC_053620.1 · 94,758–94,838 bp · −
ndhB · NC_053620.1 · 95,377–97,587 bp · −
rps7 · NC_053620.1 · 97,862–98,329 bp · −
trnN-GUU · NC_053620.1 · 109,273–109,344 bp · −
ndhF · NC_053620.1 · 110,724–112,991 bp · −
ndhD · NC_053620.1 · 115,868–117,403 bp · −
psaC · NC_053620.1 · 117,490–117,735 bp · −
ndhE · NC_053620.1 · 117,991–118,296 bp · −
ndhG · NC_053620.1 · 118,516–119,046 bp · −
ndhI · NC_053620.1 · 119,380–119,886 bp · −
ndhA · NC_053620.1 · 119,968–122,161 bp · −
ndhH · NC_053620.1 · 122,163–123,344 bp · −
rps15 · NC_053620.1 · 123,440–123,712 bp · −
ycf1 · NC_053620.1 · 124,080–129,506 bp · −
trnR-ACG · NC_053620.1 · 130,467–130,540 bp · −
rrn5 · NC_053620.1 · 130,782–130,902 bp · −
rrn4.5 · NC_053620.1 · 131,158–131,260 bp · −
rrn23 · NC_053620.1 · 131,361–134,169 bp · −
trnA-UGC · NC_053620.1 · 134,357–135,236 bp · −
trnI-GAU · NC_053620.1 · 135,301–136,318 bp · −
rrn16 · NC_053620.1 · 136,608–138,098 bp · −
trnV-GAC · NC_053620.1 · 138,328–138,399 bp · −
ycf2 · NC_053620.1 · 145,027–151,836 bp · −
psbK · NC_053620.1 · 7,900–8,094 bp · +
psbI · NC_053620.1 · 8,483–8,593 bp · +
trnG-UCC · NC_053620.1 · 10,191–10,324 bp · +
trnR-UCU · NC_053620.1 · 10,505–10,576 bp · +
trnC-GCA · NC_053620.1 · 28,782–28,852 bp · +
petN · NC_053620.1 · 29,684–29,773 bp · +
trnT-GGU · NC_053620.1 · 32,389–32,460 bp · +
psbD · NC_053620.1 · 33,846–34,907 bp · +
psbC · NC_053620.1 · 34,855–36,276 bp · +
psbZ · NC_053620.1 · 36,861–37,142 bp · +
trnG-GCC · NC_053620.1 · 37,429–37,499 bp · +
trnS-GGA · NC_053620.1 · 46,316–46,402 bp · +
trnL-UAA · NC_053620.1 · 48,427–48,998 bp · +
trnF-GAA · NC_053620.1 · 49,304–49,376 bp · +
trnM-CAU · NC_053620.1 · 53,544–53,616 bp · +
rbcL · NC_053620.1 · 56,473–57,936 bp · +
accD · NC_053620.1 · 58,593–60,125 bp · +
psaI · NC_053620.1 · 60,851–60,961 bp · +
ycf4 · NC_053620.1 · 61,404–61,958 bp · +
cemA · NC_053620.1 · 62,599–63,288 bp · +
petA · NC_053620.1 · 63,511–64,473 bp · +
petL · NC_053620.1 · 67,124–67,219 bp · +
petG · NC_053620.1 · 67,394–67,507 bp · +
psaJ · NC_053620.1 · 68,218–68,352 bp · +
rpl33 · NC_053620.1 · 68,835–69,035 bp · +
rps18 · NC_053620.1 · 69,153–69,509 bp · +
rps12 · NC_053620.1 · 140,009–140,802 bp · +
psbB · NC_053620.1 · 73,573–75,099 bp · +
psbT · NC_053620.1 · 75,291–75,398 bp · +
psbH · NC_053620.1 · 75,708–75,929 bp · +
petB · NC_053620.1 · 76,043–77,401 bp · +
petD · NC_053620.1 · 77,591–78,805 bp · +
ycf2 · NC_053620.1 · 87,349–94,158 bp · +
trnV-GAC · NC_053620.1 · 100,786–100,857 bp · +
rrn16 · NC_053620.1 · 101,087–102,577 bp · +
trnI-GAU · NC_053620.1 · 102,867–103,884 bp · +
trnA-UGC · NC_053620.1 · 103,949–104,828 bp · +
rrn23 · NC_053620.1 · 105,016–107,824 bp · +
rrn4.5 · NC_053620.1 · 107,925–108,027 bp · +
rrn5 · NC_053620.1 · 108,283–108,403 bp · +
trnR-ACG · NC_053620.1 · 108,645–108,718 bp · +
ycf1 · NC_053620.1 · 109,676–110,851 bp · +
rpl32 · NC_053620.1 · 113,542–113,718 bp · +
trnL-UAG · NC_053620.1 · 114,489–114,568 bp · +
ccsA · NC_053620.1 · 114,653–115,630 bp · +
trnN-GUU · NC_053620.1 · 129,841–129,912 bp · +
rps7 · NC_053620.1 · 140,856–141,323 bp · +
ndhB · NC_053620.1 · 141,598–143,808 bp · +
trnL-CAA · NC_053620.1 · 144,347–144,427 bp · +
trnI-CAU · NC_053620.1 · 151,925–151,998 bp · +
rpl23 · NC_053620.1 · 152,164–152,445 bp · +
rpl2 · NC_053620.1 · 152,469–153,960 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Gmelina hainanensis
ANNOTATED PLASTOME
NC_053620.1
154,065 bp · 131 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38516 77032 115549 154065 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-GGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
132 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 5 78 74 Locate
psbA gene − 418 1476 1059 Locate
trnK-UUU gene − 1709 4289 2581 Locate
matK gene − 2015 3550 1536 Locate
rps16 gene − 5193 6334 1142 Locate
trnQ-UUG gene − 7508 7579 72 Locate
psbK gene + 7900 8094 195 Locate
psbI gene + 8483 8593 111 Locate
trnS-GCU gene − 8725 8812 88 Locate
trnG-UCC gene + 10191 10324 134 Locate
trnR-UCU gene + 10505 10576 72 Locate
atpA gene − 10703 12226 1524 Locate
atpF gene − 12332 13594 1263 Locate
atpH gene − 14013 14258 246 Locate
atpI gene − 15268 16011 744 Locate
rps2 gene − 16242 16952 711 Locate
rpoC2 gene − 17178 21527 4350 Locate
rpoC1 gene − 21508 24391 2884 Locate
rpoB gene − 24418 27630 3213 Locate
trnC-GCA gene + 28782 28852 71 Locate
petN gene + 29684 29773 90 Locate
psbM gene − 30758 30862 105 Locate
trnD-GUC gene − 31384 31457 74 Locate
trnY-GUA gene − 31566 31649 84 Locate
trnE-UUC gene − 31709 31781 73 Locate
trnT-GGU gene + 32389 32460 72 Locate
psbD gene + 33846 34907 1062 Locate
psbC gene + 34855 36276 1422 Locate
trnS-UGA gene − 36524 36616 93 Locate
psbZ gene + 36861 37142 282 Locate
trnG-GCC gene + 37429 37499 71 Locate
trnfM-CAU gene − 37667 37740 74 Locate
rps14 gene − 37890 38192 303 Locate
psaB gene − 38315 40519 2205 Locate
psaA gene − 40545 42797 2253 Locate
ycf3 gene − 43504 45449 1946 Locate
trnS-GGA gene + 46316 46402 87 Locate
rps4 gene − 46686 47291 606 Locate
trnT-UGU gene − 47621 47693 73 Locate
trnL-UAA gene + 48427 48998 572 Locate
trnF-GAA gene + 49304 49376 73 Locate
ndhJ gene − 50040 50516 477 Locate
ndhK gene − 50618 51295 678 Locate
ndhC gene − 51348 51710 363 Locate
trnV-UAC gene − 52712 53363 652 Locate
trnM-CAU gene + 53544 53616 73 Locate
atpE gene − 53833 54234 402 Locate
atpB gene − 54231 55727 1497 Locate
rbcL gene + 56473 57936 1464 Locate
accD gene + 58593 60125 1533 Locate
psaI gene + 60851 60961 111 Locate
ycf4 gene + 61404 61958 555 Locate
cemA gene + 62599 63288 690 Locate
petA gene + 63511 64473 963 Locate
psbJ gene − 65414 65536 123 Locate
psbL gene − 65670 65891 222 Locate
psbF gene − 65810 65929 120 Locate
psbE gene − 65944 66195 252 Locate
petL gene + 67124 67219 96 Locate
petG gene + 67394 67507 114 Locate
trnW-CCA gene − 67630 67703 74 Locate
trnP-GGG gene − 67867 67940 74 Locate
psaJ gene + 68218 68352 135 Locate
rpl33 gene + 68835 69035 201 Locate
rps18 gene + 69153 69509 357 Locate
rpl20 gene − 69752 70138 387 Locate
rps12 gene − 70937 71050 114 Locate
clpP gene − 71192 73127 1936 Locate
psbB gene + 73573 75099 1527 Locate
psbT gene + 75291 75398 108 Locate
psbN gene − 75471 75602 132 Locate
psbH gene + 75708 75929 222 Locate
petB gene + 76043 77401 1359 Locate
petD gene + 77591 78805 1215 Locate
rpoA gene − 78992 79996 1005 Locate
rps11 gene − 80068 80484 417 Locate
rpl36 gene − 80586 80699 114 Locate
infA gene − 80795 81028 234 Locate
rps8 gene − 81153 81557 405 Locate
rpl14 gene − 81747 82115 369 Locate
rpl16 gene − 82271 83555 1285 Locate
rps3 gene − 83697 84359 663 Locate
rpl22 gene − 84344 84817 474 Locate
rps19 gene − 84884 85162 279 Locate
rpl2 gene − 85225 86716 1492 Locate
rpl23 gene − 86740 87021 282 Locate
trnI-CAU gene − 87187 87260 74 Locate
ycf2 gene + 87349 94158 6810 Locate
trnL-CAA gene − 94758 94838 81 Locate
ndhB gene − 95377 97587 2211 Locate
rps7 gene − 97862 98329 468 Locate
rps12 gene − 98383 99176 794 Locate
trnV-GAC gene + 100786 100857 72 Locate
rrn16 gene + 101087 102577 1491 Locate
trnI-GAU gene + 102867 103884 1018 Locate
trnA-UGC gene + 103949 104828 880 Locate
rrn23 gene + 105016 107824 2809 Locate
rrn4.5 gene + 107925 108027 103 Locate
rrn5 gene + 108283 108403 121 Locate
trnR-ACG gene + 108645 108718 74 Locate
trnN-GUU gene − 109273 109344 72 Locate
ycf1 gene + 109676 110851 1176 Locate
ndhF gene − 110724 112991 2268 Locate
rpl32 gene + 113542 113718 177 Locate
trnL-UAG gene + 114489 114568 80 Locate
ccsA gene + 114653 115630 978 Locate
ndhD gene − 115868 117403 1536 Locate
psaC gene − 117490 117735 246 Locate
ndhE gene − 117991 118296 306 Locate
ndhG gene − 118516 119046 531 Locate
ndhI gene − 119380 119886 507 Locate
ndhA gene − 119968 122161 2194 Locate
ndhH gene − 122163 123344 1182 Locate
rps15 gene − 123440 123712 273 Locate
ycf1 gene − 124080 129506 5427 Locate
trnN-GUU gene + 129841 129912 72 Locate
trnR-ACG gene − 130467 130540 74 Locate
rrn5 gene − 130782 130902 121 Locate
rrn4.5 gene − 131158 131260 103 Locate
rrn23 gene − 131361 134169 2809 Locate
trnA-UGC gene − 134357 135236 880 Locate
trnI-GAU gene − 135301 136318 1018 Locate
rrn16 gene − 136608 138098 1491 Locate
trnV-GAC gene − 138328 138399 72 Locate
rps12 gene + 140009 140802 794 Locate
rps7 gene + 140856 141323 468 Locate
ndhB gene + 141598 143808 2211 Locate
trnL-CAA gene + 144347 144427 81 Locate
ycf2 gene − 145027 151836 6810 Locate
trnI-CAU gene + 151925 151998 74 Locate
rpl23 gene + 152164 152445 282 Locate
rpl2 gene + 152469 153960 1492 Locate
Status Available
Accession NC_053620.1
Length 154,065 bp
GC content 38.0%
Annotated genes 131
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 13 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources