Haplostachys haplostachya chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
trnH-GUG · NC_029819.1 · 1–75 bp · −
psbA · NC_029819.1 · 395–1,453 bp · −
trnK-UUU · NC_029819.1 · 1,698–4,277 bp · −
matK · NC_029819.1 · 1,997–3,526 bp · −
rps16 · NC_029819.1 · 4,921–6,061 bp · −
trnQ-UUG · NC_029819.1 · 6,890–6,961 bp · −
trnS-GCU · NC_029819.1 · 8,090–8,177 bp · −
atpA · NC_029819.1 · 9,960–11,483 bp · −
atpF · NC_029819.1 · 11,571–12,780 bp · −
atpH · NC_029819.1 · 13,146–13,391 bp · −
atpI · NC_029819.1 · 14,367–15,110 bp · −
rps2 · NC_029819.1 · 15,341–16,051 bp · −
rpoC2 · NC_029819.1 · 16,389–20,471 bp · −
rpoC1 · NC_029819.1 · 20,626–23,462 bp · −
rpoB · NC_029819.1 · 23,489–26,701 bp · −
psbM · NC_029819.1 · 29,304–29,408 bp · −
trnD-GUC · NC_029819.1 · 29,927–30,000 bp · −
trnY-GUA · NC_029819.1 · 30,116–30,199 bp · −
trnE-UUC · NC_029819.1 · 30,259–30,331 bp · −
trnS-UGA · NC_029819.1 · 34,712–34,804 bp · −
trnfM-CAU · NC_029819.1 · 35,767–35,840 bp · −
rps14 · NC_029819.1 · 35,990–36,292 bp · −
psaB · NC_029819.1 · 36,428–38,632 bp · −
psaA · NC_029819.1 · 38,658–40,910 bp · −
ycf3 · NC_029819.1 · 41,641–43,582 bp · −
rps4 · NC_029819.1 · 44,148–44,753 bp · −
trnT-UGU · NC_029819.1 · 45,139–45,211 bp · −
ndhJ · NC_029819.1 · 47,502–47,978 bp · −
ndhK · NC_029819.1 · 48,079–48,756 bp · −
ndhC · NC_029819.1 · 48,810–49,172 bp · −
trnV-UAC · NC_029819.1 · 50,117–50,769 bp · −
atpE · NC_029819.1 · 51,244–51,645 bp · −
atpB · NC_029819.1 · 51,642–53,138 bp · −
psbJ · NC_029819.1 · 62,283–62,405 bp · −
psbL · NC_029819.1 · 62,543–62,659 bp · −
psbF · NC_029819.1 · 62,683–62,802 bp · −
psbE · NC_029819.1 · 62,817–63,068 bp · −
trnW-CCA · NC_029819.1 · 64,493–64,566 bp · −
trnP-UGG · NC_029819.1 · 64,731–64,804 bp · −
rpl20 · NC_029819.1 · 66,558–66,944 bp · −
rps12 · NC_029819.1 · 67,684–67,797 bp · −
rps12 · NC_029819.1 · 94,991–95,784 bp · −
clpP · NC_029819.1 · 67,923–69,785 bp · −
psbN · NC_029819.1 · 72,118–72,249 bp · −
rpoA · NC_029819.1 · 75,639–76,652 bp · −
rps11 · NC_029819.1 · 76,731–77,147 bp · −
rpl36 · NC_029819.1 · 77,250–77,363 bp · −
infA · NC_029819.1 · 77,459–77,692 bp · −
rps8 · NC_029819.1 · 77,816–78,229 bp · −
rpl14 · NC_029819.1 · 78,403–78,771 bp · −
rpl16 · NC_029819.1 · 78,898–80,199 bp · −
rps3 · NC_029819.1 · 80,341–81,003 bp · −
rpl22 · NC_029819.1 · 80,988–81,452 bp · −
rps19 · NC_029819.1 · 81,516–81,794 bp · −
rpl2 · NC_029819.1 · 81,846–83,327 bp · −
rpl23 · NC_029819.1 · 83,346–83,627 bp · −
trnI-CAU · NC_029819.1 · 83,801–83,874 bp · −
trnL-CAA · NC_029819.1 · 91,363–91,443 bp · −
ndhB · NC_029819.1 · 91,989–94,200 bp · −
rps7 · NC_029819.1 · 94,470–94,937 bp · −
trnN-GUU · NC_029819.1 · 105,704–105,775 bp · −
ndhF · NC_029819.1 · 107,165–109,393 bp · −
ndhD · NC_029819.1 · 112,054–113,574 bp · −
psaC · NC_029819.1 · 113,678–113,923 bp · −
ndhE · NC_029819.1 · 114,175–114,480 bp · −
ndhG · NC_029819.1 · 114,690–115,220 bp · −
ndhI · NC_029819.1 · 115,596–116,102 bp · −
ndhA · NC_029819.1 · 116,182–118,292 bp · −
ndhH · NC_029819.1 · 118,294–119,475 bp · −
rps15 · NC_029819.1 · 119,576–119,848 bp · −
ycf1 · NC_029819.1 · 120,238–125,781 bp · −
trnR-ACG · NC_029819.1 · 126,746–126,819 bp · −
A4319_pgr004 · NC_029819.1 · 127,054–127,174 bp · −
A4319_pgr003 · NC_029819.1 · 127,399–127,501 bp · −
A4319_pgr002 · NC_029819.1 · 127,600–130,410 bp · −
trnA-UGC · NC_029819.1 · 130,610–131,488 bp · −
trnI-GAU · NC_029819.1 · 131,553–132,561 bp · −
A4319_pgr001 · NC_029819.1 · 132,855–134,345 bp · −
trnV-GAC · NC_029819.1 · 134,573–134,644 bp · −
ycf15 · NC_029819.1 · 140,780–141,028 bp · −
ycf2 · NC_029819.1 · 141,071–147,919 bp · −
psbK · NC_029819.1 · 7,298–7,483 bp · +
psbI · NC_029819.1 · 7,858–7,968 bp · +
trnG-UCC · NC_029819.1 · 8,872–9,631 bp · +
trnR-UCU · NC_029819.1 · 9,792–9,863 bp · +
trnC-GCA · NC_029819.1 · 27,806–27,876 bp · +
petN · NC_029819.1 · 28,712–28,801 bp · +
trnT-GGU · NC_029819.1 · 30,902–30,973 bp · +
psbD · NC_029819.1 · 32,049–33,110 bp · +
psbC · NC_029819.1 · 33,058–34,479 bp · +
psbZ · NC_029819.1 · 35,134–35,322 bp · +
trnG-GCC · NC_029819.1 · 35,547–35,617 bp · +
trnS-GGA · NC_029819.1 · 43,899–43,985 bp · +
trnL-UAA · NC_029819.1 · 45,902–46,475 bp · +
trnF-GAA · NC_029819.1 · 46,771–46,843 bp · +
trnM-CAU · NC_029819.1 · 50,958–51,030 bp · +
rbcL · NC_029819.1 · 53,940–55,385 bp · +
accD · NC_029819.1 · 56,094–57,560 bp · +
psaI · NC_029819.1 · 57,958–58,068 bp · +
ycf4 · NC_029819.1 · 58,503–59,057 bp · +
cemA · NC_029819.1 · 59,364–60,053 bp · +
petA · NC_029819.1 · 60,271–61,233 bp · +
petL · NC_029819.1 · 63,984–64,079 bp · +
petG · NC_029819.1 · 64,254–64,367 bp · +
psaJ · NC_029819.1 · 65,075–65,209 bp · +
rpl33 · NC_029819.1 · 65,689–65,889 bp · +
rps18 · NC_029819.1 · 66,036–66,341 bp · +
rps12 · NC_029819.1 · 136,098–136,891 bp · +
psbB · NC_029819.1 · 70,223–71,749 bp · +
psbT · NC_029819.1 · 71,934–72,044 bp · +
psbH · NC_029819.1 · 72,353–72,574 bp · +
petB · NC_029819.1 · 72,699–74,072 bp · +
petD · NC_029819.1 · 74,267–75,476 bp · +
ycf2 · NC_029819.1 · 83,963–90,811 bp · +
ycf15 · NC_029819.1 · 90,854–91,102 bp · +
trnV-GAC · NC_029819.1 · 97,238–97,309 bp · +
A4319_pgr008 · NC_029819.1 · 97,537–99,029 bp · +
trnI-GAU · NC_029819.1 · 99,321–100,329 bp · +
trnA-UGC · NC_029819.1 · 100,394–101,272 bp · +
A4319_pgr007 · NC_029819.1 · 101,472–104,282 bp · +
A4319_pgr006 · NC_029819.1 · 104,381–104,483 bp · +
A4319_pgr005 · NC_029819.1 · 104,708–104,828 bp · +
trnR-ACG · NC_029819.1 · 105,063–105,136 bp · +
ycf1 · NC_029819.1 · 106,101–107,159 bp · +
rpl32 · NC_029819.1 · 109,829–110,005 bp · +
trnL-UAG · NC_029819.1 · 110,742–110,821 bp · +
ccsA · NC_029819.1 · 110,902–111,873 bp · +
trnN-GUU · NC_029819.1 · 126,107–126,178 bp · +
rps7 · NC_029819.1 · 136,945–137,412 bp · +
ndhB · NC_029819.1 · 137,682–139,893 bp · +
trnL-CAA · NC_029819.1 · 140,439–140,519 bp · +
trnI-CAU · NC_029819.1 · 148,008–148,081 bp · +
rpl23 · NC_029819.1 · 148,255–148,536 bp · +
rpl2 · NC_029819.1 · 148,555–150,036 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Haplostachys haplostachya
ANNOTATED PLASTOME
NC_029819.1
150,130 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
0 37532 75065 112598 150130 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC A4319_pgr008 trnI-GAU trnA-UGC A4319_pgr007 A4319_pgr006 A4319_pgr005 trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG A4319_pgr004 A4319_pgr003 A4319_pgr002 trnA-UGC trnI-GAU A4319_pgr001 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 1 75 75 Locate
psbA gene − 395 1453 1059 Locate
trnK-UUU gene − 1698 4277 2580 Locate
matK gene − 1997 3526 1530 Locate
rps16 gene − 4921 6061 1141 Locate
trnQ-UUG gene − 6890 6961 72 Locate
psbK gene + 7298 7483 186 Locate
psbI gene + 7858 7968 111 Locate
trnS-GCU gene − 8090 8177 88 Locate
trnG-UCC gene + 8872 9631 760 Locate
trnR-UCU gene + 9792 9863 72 Locate
atpA gene − 9960 11483 1524 Locate
atpF gene − 11571 12780 1210 Locate
atpH gene − 13146 13391 246 Locate
atpI gene − 14367 15110 744 Locate
rps2 gene − 15341 16051 711 Locate
rpoC2 gene − 16389 20471 4083 Locate
rpoC1 gene − 20626 23462 2837 Locate
rpoB gene − 23489 26701 3213 Locate
trnC-GCA gene + 27806 27876 71 Locate
petN gene + 28712 28801 90 Locate
psbM gene − 29304 29408 105 Locate
trnD-GUC gene − 29927 30000 74 Locate
trnY-GUA gene − 30116 30199 84 Locate
trnE-UUC gene − 30259 30331 73 Locate
trnT-GGU gene + 30902 30973 72 Locate
psbD gene + 32049 33110 1062 Locate
psbC gene + 33058 34479 1422 Locate
trnS-UGA gene − 34712 34804 93 Locate
psbZ gene + 35134 35322 189 Locate
trnG-GCC gene + 35547 35617 71 Locate
trnfM-CAU gene − 35767 35840 74 Locate
rps14 gene − 35990 36292 303 Locate
psaB gene − 36428 38632 2205 Locate
psaA gene − 38658 40910 2253 Locate
ycf3 gene − 41641 43582 1942 Locate
trnS-GGA gene + 43899 43985 87 Locate
rps4 gene − 44148 44753 606 Locate
trnT-UGU gene − 45139 45211 73 Locate
trnL-UAA gene + 45902 46475 574 Locate
trnF-GAA gene + 46771 46843 73 Locate
ndhJ gene − 47502 47978 477 Locate
ndhK gene − 48079 48756 678 Locate
ndhC gene − 48810 49172 363 Locate
trnV-UAC gene − 50117 50769 653 Locate
trnM-CAU gene + 50958 51030 73 Locate
atpE gene − 51244 51645 402 Locate
atpB gene − 51642 53138 1497 Locate
rbcL gene + 53940 55385 1446 Locate
accD gene + 56094 57560 1467 Locate
psaI gene + 57958 58068 111 Locate
ycf4 gene + 58503 59057 555 Locate
cemA gene + 59364 60053 690 Locate
petA gene + 60271 61233 963 Locate
psbJ gene − 62283 62405 123 Locate
psbL gene − 62543 62659 117 Locate
psbF gene − 62683 62802 120 Locate
psbE gene − 62817 63068 252 Locate
petL gene + 63984 64079 96 Locate
petG gene + 64254 64367 114 Locate
trnW-CCA gene − 64493 64566 74 Locate
trnP-UGG gene − 64731 64804 74 Locate
psaJ gene + 65075 65209 135 Locate
rpl33 gene + 65689 65889 201 Locate
rps18 gene + 66036 66341 306 Locate
rpl20 gene − 66558 66944 387 Locate
rps12 gene − 67684 67797 114 Locate
clpP gene − 67923 69785 1863 Locate
psbB gene + 70223 71749 1527 Locate
psbT gene + 71934 72044 111 Locate
psbN gene − 72118 72249 132 Locate
psbH gene + 72353 72574 222 Locate
petB gene + 72699 74072 1374 Locate
petD gene + 74267 75476 1210 Locate
rpoA gene − 75639 76652 1014 Locate
rps11 gene − 76731 77147 417 Locate
rpl36 gene − 77250 77363 114 Locate
infA gene − 77459 77692 234 Locate
rps8 gene − 77816 78229 414 Locate
rpl14 gene − 78403 78771 369 Locate
rpl16 gene − 78898 80199 1302 Locate
rps3 gene − 80341 81003 663 Locate
rpl22 gene − 80988 81452 465 Locate
rps19 gene − 81516 81794 279 Locate
rpl2 gene − 81846 83327 1482 Locate
rpl23 gene − 83346 83627 282 Locate
trnI-CAU gene − 83801 83874 74 Locate
ycf2 gene + 83963 90811 6849 Locate
ycf15 gene + 90854 91102 249 Locate
trnL-CAA gene − 91363 91443 81 Locate
ndhB gene − 91989 94200 2212 Locate
rps7 gene − 94470 94937 468 Locate
rps12 gene − 94991 95784 794 Locate
trnV-GAC gene + 97238 97309 72 Locate
A4319_pgr008 gene + 97537 99029 1493 Locate
trnI-GAU gene + 99321 100329 1009 Locate
trnA-UGC gene + 100394 101272 879 Locate
A4319_pgr007 gene + 101472 104282 2811 Locate
A4319_pgr006 gene + 104381 104483 103 Locate
A4319_pgr005 gene + 104708 104828 121 Locate
trnR-ACG gene + 105063 105136 74 Locate
trnN-GUU gene − 105704 105775 72 Locate
ycf1 gene + 106101 107159 1059 Locate
ndhF gene − 107165 109393 2229 Locate
rpl32 gene + 109829 110005 177 Locate
trnL-UAG gene + 110742 110821 80 Locate
ccsA gene + 110902 111873 972 Locate
ndhD gene − 112054 113574 1521 Locate
psaC gene − 113678 113923 246 Locate
ndhE gene − 114175 114480 306 Locate
ndhG gene − 114690 115220 531 Locate
ndhI gene − 115596 116102 507 Locate
ndhA gene − 116182 118292 2111 Locate
ndhH gene − 118294 119475 1182 Locate
rps15 gene − 119576 119848 273 Locate
ycf1 gene − 120238 125781 5544 Locate
trnN-GUU gene + 126107 126178 72 Locate
trnR-ACG gene − 126746 126819 74 Locate
A4319_pgr004 gene − 127054 127174 121 Locate
A4319_pgr003 gene − 127399 127501 103 Locate
A4319_pgr002 gene − 127600 130410 2811 Locate
trnA-UGC gene − 130610 131488 879 Locate
trnI-GAU gene − 131553 132561 1009 Locate
A4319_pgr001 gene − 132855 134345 1491 Locate
trnV-GAC gene − 134573 134644 72 Locate
rps12 gene + 136098 136891 794 Locate
rps7 gene + 136945 137412 468 Locate
ndhB gene + 137682 139893 2212 Locate
trnL-CAA gene + 140439 140519 81 Locate
ycf15 gene − 140780 141028 249 Locate
ycf2 gene − 141071 147919 6849 Locate
trnI-CAU gene + 148008 148081 74 Locate
rpl23 gene + 148255 148536 282 Locate
rpl2 gene + 148555 150036 1482 Locate
Status Available
Accession NC_029819.1
Length 150,130 bp
GC content 38.5%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 23 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12
SSR 0
Direct 0
Inverted 0
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources