Isodon alborubrus chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · NC_067644.1 · 11–85 bp · −
psbA · NC_067644.1 · 393–1,451 bp · −
trnK-UUU · NC_067644.1 · 1,683–4,263 bp · −
matK · NC_067644.1 · 2,003–3,523 bp · −
OOC85_pgp086 · NC_067644.1 · 4,790–5,935 bp · −
trnQ-UUG · NC_067644.1 · 6,881–6,952 bp · −
trnS-GCU · NC_067644.1 · 8,186–8,273 bp · −
atpA · NC_067644.1 · 10,177–11,700 bp · −
atpF · NC_067644.1 · 11,810–13,055 bp · −
atpH · NC_067644.1 · 13,347–13,592 bp · −
atpI · NC_067644.1 · 14,585–15,328 bp · −
rps2 · NC_067644.1 · 15,554–16,264 bp · −
rpoC2 · NC_067644.1 · 16,480–20,661 bp · −
rpoC1 · NC_067644.1 · 20,826–23,659 bp · −
rpoB · NC_067644.1 · 23,686–26,898 bp · −
psbM · NC_067644.1 · 29,408–29,512 bp · −
trnD-GUC · NC_067644.1 · 30,031–30,104 bp · −
trnY-GUA · NC_067644.1 · 30,215–30,298 bp · −
trnE-UUC · NC_067644.1 · 30,376–30,448 bp · −
trnS-UGA · NC_067644.1 · 35,114–35,206 bp · −
trnfM-CAU · NC_067644.1 · 36,261–36,334 bp · −
rps14 · NC_067644.1 · 36,480–36,782 bp · −
psaB · NC_067644.1 · 36,905–39,109 bp · −
psaA · NC_067644.1 · 39,135–41,387 bp · −
ycf3 · NC_067644.1 · 42,155–44,095 bp · −
rps4 · NC_067644.1 · 45,343–45,948 bp · −
trnT-UGU · NC_067644.1 · 46,373–46,445 bp · −
ndhJ · NC_067644.1 · 48,716–49,192 bp · −
ndhK · NC_067644.1 · 49,303–49,980 bp · −
ndhC · NC_067644.1 · 50,032–50,394 bp · −
trnV-UAC · NC_067644.1 · 51,351–52,006 bp · −
atpE · NC_067644.1 · 52,460–52,861 bp · −
atpB · NC_067644.1 · 52,858–54,354 bp · −
psbJ · NC_067644.1 · 64,072–64,194 bp · −
psbL · NC_067644.1 · 64,329–64,445 bp · −
psbF · NC_067644.1 · 64,469–64,588 bp · −
psbE · NC_067644.1 · 64,603–64,854 bp · −
trnW-CCA · NC_067644.1 · 66,253–66,326 bp · −
trnP-UGG · NC_067644.1 · 66,495–66,568 bp · −
rpl20 · NC_067644.1 · 68,355–68,741 bp · −
rps12 · NC_067644.1 · 69,476–69,589 bp · −
rps12 · NC_067644.1 · 96,884–97,676 bp · −
clpP · NC_067644.1 · 69,708–71,623 bp · −
psbN · NC_067644.1 · 73,974–74,105 bp · −
rpoA · NC_067644.1 · 77,479–78,486 bp · −
rps11 · NC_067644.1 · 78,558–78,974 bp · −
rpl36 · NC_067644.1 · 79,090–79,203 bp · −
infA · NC_067644.1 · 79,299–79,532 bp · −
rps8 · NC_067644.1 · 79,660–80,064 bp · −
rpl14 · NC_067644.1 · 80,247–80,615 bp · −
rpl16 · NC_067644.1 · 80,749–82,016 bp · −
rps3 · NC_067644.1 · 82,160–82,822 bp · −
rpl22 · NC_067644.1 · 82,807–83,280 bp · −
rps19 · NC_067644.1 · 83,345–83,623 bp · −
rpl2 · NC_067644.1 · 83,691–85,169 bp · −
rpl23 · NC_067644.1 · 85,188–85,469 bp · −
trnI-CAU · NC_067644.1 · 85,635–85,708 bp · −
trnL-CAA · NC_067644.1 · 93,233–93,313 bp · −
ndhB · NC_067644.1 · 93,885–96,092 bp · −
rps7 · NC_067644.1 · 96,363–96,830 bp · −
trnN-GUU · NC_067644.1 · 107,828–107,899 bp · −
ndhF · NC_067644.1 · 109,265–111,502 bp · −
ndhD · NC_067644.1 · 114,276–115,805 bp · −
psaC · NC_067644.1 · 115,896–116,141 bp · −
ndhE · NC_067644.1 · 116,397–116,702 bp · −
ndhG · NC_067644.1 · 116,917–117,447 bp · −
ndhI · NC_067644.1 · 117,807–118,313 bp · −
ndhA · NC_067644.1 · 118,394–120,517 bp · −
ndhH · NC_067644.1 · 120,519–121,700 bp · −
rps15 · NC_067644.1 · 121,815–122,087 bp · −
ycf1 · NC_067644.1 · 122,527–128,049 bp · −
trnR-ACG · NC_067644.1 · 129,029–129,102 bp · −
rrn5 · NC_067644.1 · 129,346–129,466 bp · −
rrn4.5 · NC_067644.1 · 129,722–129,824 bp · −
rrn23 · NC_067644.1 · 129,923–132,733 bp · −
trnA-UGC · NC_067644.1 · 132,905–133,783 bp · −
trnI-GAU · NC_067644.1 · 133,848–134,866 bp · −
rrn16 · NC_067644.1 · 135,164–136,654 bp · −
trnV-GAC · NC_067644.1 · 136,881–136,952 bp · −
ycf15 · NC_067644.1 · 143,318–143,467 bp · −
ycf2 · NC_067644.1 · 143,657–150,487 bp · −
psbK · NC_067644.1 · 7,346–7,531 bp · +
psbI · NC_067644.1 · 7,920–8,030 bp · +
trnG-UCC · NC_067644.1 · 9,042–9,805 bp · +
trnR-UCU · NC_067644.1 · 10,002–10,073 bp · +
trnC-GCA · NC_067644.1 · 28,094–28,164 bp · +
petN · NC_067644.1 · 28,327–28,416 bp · +
trnT-GGU · NC_067644.1 · 31,058–31,129 bp · +
psbD · NC_067644.1 · 32,447–33,508 bp · +
psbC · NC_067644.1 · 33,456–34,877 bp · +
psbZ · NC_067644.1 · 35,569–35,757 bp · +
trnG-GCC · NC_067644.1 · 36,002–36,072 bp · +
trnS-GGA · NC_067644.1 · 44,960–45,046 bp · +
trnL-UAA · NC_067644.1 · 47,133–47,676 bp · +
trnF-GAA · NC_067644.1 · 47,970–48,042 bp · +
trnM-CAU · NC_067644.1 · 52,187–52,259 bp · +
rbcL · NC_067644.1 · 55,146–56,579 bp · +
accD · NC_067644.1 · 57,284–58,765 bp · +
psaI · NC_067644.1 · 59,465–59,575 bp · +
ycf4 · NC_067644.1 · 60,022–60,576 bp · +
cemA · NC_067644.1 · 61,167–61,856 bp · +
petA · NC_067644.1 · 62,071–63,033 bp · +
petL · NC_067644.1 · 65,747–65,842 bp · +
petG · NC_067644.1 · 66,017–66,130 bp · +
psaJ · NC_067644.1 · 66,850–66,984 bp · +
rpl33 · NC_067644.1 · 67,447–67,647 bp · +
rps18 · NC_067644.1 · 67,814–68,119 bp · +
rps12 · NC_067644.1 · 138,614–139,406 bp · +
psbB · NC_067644.1 · 72,096–73,622 bp · +
psbT · NC_067644.1 · 73,807–73,908 bp · +
psbH · NC_067644.1 · 74,211–74,429 bp · +
petB · NC_067644.1 · 74,555–75,921 bp · +
petD · NC_067644.1 · 76,110–77,302 bp · +
ycf2 · NC_067644.1 · 85,803–92,633 bp · +
ycf15 · NC_067644.1 · 92,823–92,972 bp · +
trnV-GAC · NC_067644.1 · 99,338–99,409 bp · +
rrn16 · NC_067644.1 · 99,636–101,126 bp · +
trnI-GAU · NC_067644.1 · 101,424–102,442 bp · +
trnA-UGC · NC_067644.1 · 102,507–103,385 bp · +
rrn23 · NC_067644.1 · 103,557–106,367 bp · +
rrn4.5 · NC_067644.1 · 106,466–106,568 bp · +
rrn5 · NC_067644.1 · 106,824–106,944 bp · +
trnR-ACG · NC_067644.1 · 107,188–107,261 bp · +
ycf1 · NC_067644.1 · 108,241–109,371 bp · +
rpl32 · NC_067644.1 · 111,971–112,141 bp · +
trnL-UAG · NC_067644.1 · 112,905–112,984 bp · +
ccsA · NC_067644.1 · 113,073–114,044 bp · +
trnN-GUU · NC_067644.1 · 128,391–128,462 bp · +
rps7 · NC_067644.1 · 139,460–139,927 bp · +
ndhB · NC_067644.1 · 140,198–142,405 bp · +
trnL-CAA · NC_067644.1 · 142,977–143,057 bp · +
trnI-CAU · NC_067644.1 · 150,582–150,655 bp · +
rpl23 · NC_067644.1 · 150,821–151,102 bp · +
rpl2 · NC_067644.1 · 151,121–152,599 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Isodon alborubrus
ANNOTATED PLASTOME
NC_067644.1
152,709 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
ATP synthase
Ribosomal protein
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38177 76354 114532 152709 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK OOC85_pgp086 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 11 85 75 Locate
psbA gene − 393 1451 1059 Locate
trnK-UUU gene − 1683 4263 2581 Locate
matK gene − 2003 3523 1521 Locate
OOC85_pgp086 gene − 4790 5935 1146 Locate
trnQ-UUG gene − 6881 6952 72 Locate
psbK gene + 7346 7531 186 Locate
psbI gene + 7920 8030 111 Locate
trnS-GCU gene − 8186 8273 88 Locate
trnG-UCC gene + 9042 9805 764 Locate
trnR-UCU gene + 10002 10073 72 Locate
atpA gene − 10177 11700 1524 Locate
atpF gene − 11810 13055 1246 Locate
atpH gene − 13347 13592 246 Locate
atpI gene − 14585 15328 744 Locate
rps2 gene − 15554 16264 711 Locate
rpoC2 gene − 16480 20661 4182 Locate
rpoC1 gene − 20826 23659 2834 Locate
rpoB gene − 23686 26898 3213 Locate
trnC-GCA gene + 28094 28164 71 Locate
petN gene + 28327 28416 90 Locate
psbM gene − 29408 29512 105 Locate
trnD-GUC gene − 30031 30104 74 Locate
trnY-GUA gene − 30215 30298 84 Locate
trnE-UUC gene − 30376 30448 73 Locate
trnT-GGU gene + 31058 31129 72 Locate
psbD gene + 32447 33508 1062 Locate
psbC gene + 33456 34877 1422 Locate
trnS-UGA gene − 35114 35206 93 Locate
psbZ gene + 35569 35757 189 Locate
trnG-GCC gene + 36002 36072 71 Locate
trnfM-CAU gene − 36261 36334 74 Locate
rps14 gene − 36480 36782 303 Locate
psaB gene − 36905 39109 2205 Locate
psaA gene − 39135 41387 2253 Locate
ycf3 gene − 42155 44095 1941 Locate
trnS-GGA gene + 44960 45046 87 Locate
rps4 gene − 45343 45948 606 Locate
trnT-UGU gene − 46373 46445 73 Locate
trnL-UAA gene + 47133 47676 544 Locate
trnF-GAA gene + 47970 48042 73 Locate
ndhJ gene − 48716 49192 477 Locate
ndhK gene − 49303 49980 678 Locate
ndhC gene − 50032 50394 363 Locate
trnV-UAC gene − 51351 52006 656 Locate
trnM-CAU gene + 52187 52259 73 Locate
atpE gene − 52460 52861 402 Locate
atpB gene − 52858 54354 1497 Locate
rbcL gene + 55146 56579 1434 Locate
accD gene + 57284 58765 1482 Locate
psaI gene + 59465 59575 111 Locate
ycf4 gene + 60022 60576 555 Locate
cemA gene + 61167 61856 690 Locate
petA gene + 62071 63033 963 Locate
psbJ gene − 64072 64194 123 Locate
psbL gene − 64329 64445 117 Locate
psbF gene − 64469 64588 120 Locate
psbE gene − 64603 64854 252 Locate
petL gene + 65747 65842 96 Locate
petG gene + 66017 66130 114 Locate
trnW-CCA gene − 66253 66326 74 Locate
trnP-UGG gene − 66495 66568 74 Locate
psaJ gene + 66850 66984 135 Locate
rpl33 gene + 67447 67647 201 Locate
rps18 gene + 67814 68119 306 Locate
rpl20 gene − 68355 68741 387 Locate
rps12 gene − 69476 69589 114 Locate
clpP gene − 69708 71623 1916 Locate
psbB gene + 72096 73622 1527 Locate
psbT gene + 73807 73908 102 Locate
psbN gene − 73974 74105 132 Locate
psbH gene + 74211 74429 219 Locate
petB gene + 74555 75921 1367 Locate
petD gene + 76110 77302 1193 Locate
rpoA gene − 77479 78486 1008 Locate
rps11 gene − 78558 78974 417 Locate
rpl36 gene − 79090 79203 114 Locate
infA gene − 79299 79532 234 Locate
rps8 gene − 79660 80064 405 Locate
rpl14 gene − 80247 80615 369 Locate
rpl16 gene − 80749 82016 1268 Locate
rps3 gene − 82160 82822 663 Locate
rpl22 gene − 82807 83280 474 Locate
rps19 gene − 83345 83623 279 Locate
rpl2 gene − 83691 85169 1479 Locate
rpl23 gene − 85188 85469 282 Locate
trnI-CAU gene − 85635 85708 74 Locate
ycf2 gene + 85803 92633 6831 Locate
ycf15 gene + 92823 92972 150 Locate
trnL-CAA gene − 93233 93313 81 Locate
ndhB gene − 93885 96092 2208 Locate
rps7 gene − 96363 96830 468 Locate
rps12 gene − 96884 97676 793 Locate
trnV-GAC gene + 99338 99409 72 Locate
rrn16 gene + 99636 101126 1491 Locate
trnI-GAU gene + 101424 102442 1019 Locate
trnA-UGC gene + 102507 103385 879 Locate
rrn23 gene + 103557 106367 2811 Locate
rrn4.5 gene + 106466 106568 103 Locate
rrn5 gene + 106824 106944 121 Locate
trnR-ACG gene + 107188 107261 74 Locate
trnN-GUU gene − 107828 107899 72 Locate
ycf1 gene + 108241 109371 1131 Locate
ndhF gene − 109265 111502 2238 Locate
rpl32 gene + 111971 112141 171 Locate
trnL-UAG gene + 112905 112984 80 Locate
ccsA gene + 113073 114044 972 Locate
ndhD gene − 114276 115805 1530 Locate
psaC gene − 115896 116141 246 Locate
ndhE gene − 116397 116702 306 Locate
ndhG gene − 116917 117447 531 Locate
ndhI gene − 117807 118313 507 Locate
ndhA gene − 118394 120517 2124 Locate
ndhH gene − 120519 121700 1182 Locate
rps15 gene − 121815 122087 273 Locate
ycf1 gene − 122527 128049 5523 Locate
trnN-GUU gene + 128391 128462 72 Locate
trnR-ACG gene − 129029 129102 74 Locate
rrn5 gene − 129346 129466 121 Locate
rrn4.5 gene − 129722 129824 103 Locate
rrn23 gene − 129923 132733 2811 Locate
trnA-UGC gene − 132905 133783 879 Locate
trnI-GAU gene − 133848 134866 1019 Locate
rrn16 gene − 135164 136654 1491 Locate
trnV-GAC gene − 136881 136952 72 Locate
rps12 gene + 138614 139406 793 Locate
rps7 gene + 139460 139927 468 Locate
ndhB gene + 140198 142405 2208 Locate
trnL-CAA gene + 142977 143057 81 Locate
ycf15 gene − 143318 143467 150 Locate
ycf2 gene − 143657 150487 6831 Locate
trnI-CAU gene + 150582 150655 74 Locate
rpl23 gene + 150821 151102 282 Locate
rpl2 gene + 151121 152599 1479 Locate
Status Available
Accession NC_067644.1
Length 152,709 bp
GC content 37.6%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 16 Atp Synthase 6 Ribosomal Protein 25 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources