Isodon angustifolius chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · NC_067645.1 · 11–85 bp · −
psbA · NC_067645.1 · 393–1,451 bp · −
trnK-UUU · NC_067645.1 · 1,683–4,263 bp · −
matK · NC_067645.1 · 2,003–3,523 bp · −
ON978_pgp086 · NC_067645.1 · 4,789–5,926 bp · −
trnQ-UUG · NC_067645.1 · 6,873–6,944 bp · −
trnS-GCU · NC_067645.1 · 8,176–8,263 bp · −
atpA · NC_067645.1 · 10,172–11,695 bp · −
atpF · NC_067645.1 · 11,808–13,053 bp · −
atpH · NC_067645.1 · 13,345–13,590 bp · −
atpI · NC_067645.1 · 14,591–15,334 bp · −
rps2 · NC_067645.1 · 15,560–16,270 bp · −
rpoC2 · NC_067645.1 · 16,485–20,666 bp · −
rpoC1 · NC_067645.1 · 20,831–23,664 bp · −
rpoB · NC_067645.1 · 23,691–26,903 bp · −
psbM · NC_067645.1 · 29,403–29,507 bp · −
trnD-GUC · NC_067645.1 · 30,026–30,099 bp · −
trnY-GUA · NC_067645.1 · 30,210–30,293 bp · −
trnE-UUC · NC_067645.1 · 30,379–30,451 bp · −
trnS-UGA · NC_067645.1 · 35,122–35,214 bp · −
trnfM-CAU · NC_067645.1 · 36,247–36,320 bp · −
rps14 · NC_067645.1 · 36,466–36,768 bp · −
psaB · NC_067645.1 · 36,891–39,095 bp · −
psaA · NC_067645.1 · 39,121–41,373 bp · −
ycf3 · NC_067645.1 · 42,135–44,082 bp · −
rps4 · NC_067645.1 · 45,330–45,935 bp · −
trnT-UGU · NC_067645.1 · 46,359–46,431 bp · −
ndhJ · NC_067645.1 · 48,716–49,192 bp · −
ndhK · NC_067645.1 · 49,303–49,980 bp · −
ndhC · NC_067645.1 · 50,032–50,394 bp · −
trnV-UAC · NC_067645.1 · 51,347–52,002 bp · −
atpE · NC_067645.1 · 52,456–52,857 bp · −
atpB · NC_067645.1 · 52,854–54,350 bp · −
psbJ · NC_067645.1 · 64,069–64,191 bp · −
psbL · NC_067645.1 · 64,326–64,442 bp · −
psbF · NC_067645.1 · 64,466–64,585 bp · −
psbE · NC_067645.1 · 64,600–64,851 bp · −
trnW-CCA · NC_067645.1 · 66,250–66,323 bp · −
trnP-UGG · NC_067645.1 · 66,492–66,565 bp · −
rpl20 · NC_067645.1 · 68,350–68,736 bp · −
rps12 · NC_067645.1 · 69,471–69,584 bp · −
rps12 · NC_067645.1 · 96,879–97,671 bp · −
clpP · NC_067645.1 · 69,703–71,617 bp · −
psbN · NC_067645.1 · 73,967–74,098 bp · −
rpoA · NC_067645.1 · 77,472–78,479 bp · −
rps11 · NC_067645.1 · 78,551–78,967 bp · −
rpl36 · NC_067645.1 · 79,083–79,196 bp · −
infA · NC_067645.1 · 79,292–79,525 bp · −
rps8 · NC_067645.1 · 79,651–80,055 bp · −
rpl14 · NC_067645.1 · 80,238–80,606 bp · −
rpl16 · NC_067645.1 · 80,740–82,007 bp · −
rps3 · NC_067645.1 · 82,156–82,818 bp · −
rpl22 · NC_067645.1 · 82,803–83,276 bp · −
rps19 · NC_067645.1 · 83,340–83,618 bp · −
rpl2 · NC_067645.1 · 83,686–85,164 bp · −
rpl23 · NC_067645.1 · 85,183–85,464 bp · −
trnI-CAU · NC_067645.1 · 85,630–85,703 bp · −
trnL-CAA · NC_067645.1 · 93,228–93,308 bp · −
ndhB · NC_067645.1 · 93,880–96,087 bp · −
rps7 · NC_067645.1 · 96,358–96,825 bp · −
trnN-GUU · NC_067645.1 · 107,823–107,894 bp · −
ndhF · NC_067645.1 · 109,260–111,491 bp · −
ndhD · NC_067645.1 · 114,266–115,801 bp · −
psaC · NC_067645.1 · 115,892–116,137 bp · −
ndhE · NC_067645.1 · 116,393–116,698 bp · −
ndhG · NC_067645.1 · 116,913–117,443 bp · −
ndhI · NC_067645.1 · 117,802–118,308 bp · −
ndhA · NC_067645.1 · 118,389–120,512 bp · −
ndhH · NC_067645.1 · 120,514–121,695 bp · −
rps15 · NC_067645.1 · 121,810–122,082 bp · −
ycf1 · NC_067645.1 · 122,512–128,034 bp · −
trnR-ACG · NC_067645.1 · 129,014–129,087 bp · −
rrn5 · NC_067645.1 · 129,331–129,451 bp · −
rrn4.5 · NC_067645.1 · 129,707–129,809 bp · −
rrn23 · NC_067645.1 · 129,908–132,718 bp · −
trnA-UGC · NC_067645.1 · 132,890–133,768 bp · −
trnI-GAU · NC_067645.1 · 133,833–134,850 bp · −
rrn16 · NC_067645.1 · 135,148–136,638 bp · −
trnV-GAC · NC_067645.1 · 136,865–136,936 bp · −
ycf15 · NC_067645.1 · 143,303–143,452 bp · −
ycf2 · NC_067645.1 · 143,642–150,472 bp · −
psbK · NC_067645.1 · 7,338–7,523 bp · +
psbI · NC_067645.1 · 7,910–8,020 bp · +
trnG-UCC · NC_067645.1 · 9,047–9,806 bp · +
trnR-UCU · NC_067645.1 · 9,997–10,068 bp · +
trnC-GCA · NC_067645.1 · 28,088–28,158 bp · +
petN · NC_067645.1 · 28,321–28,410 bp · +
trnT-GGU · NC_067645.1 · 31,060–31,131 bp · +
psbD · NC_067645.1 · 32,456–33,517 bp · +
psbC · NC_067645.1 · 33,465–34,886 bp · +
psbZ · NC_067645.1 · 35,555–35,743 bp · +
trnG-GCC · NC_067645.1 · 35,988–36,058 bp · +
trnS-GGA · NC_067645.1 · 44,947–45,033 bp · +
trnL-UAA · NC_067645.1 · 47,118–47,682 bp · +
trnF-GAA · NC_067645.1 · 47,976–48,048 bp · +
trnM-CAU · NC_067645.1 · 52,183–52,255 bp · +
rbcL · NC_067645.1 · 55,143–56,576 bp · +
accD · NC_067645.1 · 57,281–58,762 bp · +
psaI · NC_067645.1 · 59,464–59,574 bp · +
ycf4 · NC_067645.1 · 60,020–60,574 bp · +
cemA · NC_067645.1 · 61,165–61,854 bp · +
petA · NC_067645.1 · 62,069–63,031 bp · +
petL · NC_067645.1 · 65,744–65,839 bp · +
petG · NC_067645.1 · 66,014–66,127 bp · +
psaJ · NC_067645.1 · 66,847–66,981 bp · +
rpl33 · NC_067645.1 · 67,443–67,643 bp · +
rps18 · NC_067645.1 · 67,810–68,115 bp · +
rps12 · NC_067645.1 · 138,599–139,391 bp · +
psbB · NC_067645.1 · 72,090–73,616 bp · +
psbT · NC_067645.1 · 73,800–73,901 bp · +
psbH · NC_067645.1 · 74,204–74,422 bp · +
petB · NC_067645.1 · 74,548–75,914 bp · +
petD · NC_067645.1 · 76,103–77,295 bp · +
ycf2 · NC_067645.1 · 85,798–92,628 bp · +
ycf15 · NC_067645.1 · 92,818–92,967 bp · +
trnV-GAC · NC_067645.1 · 99,334–99,405 bp · +
rrn16 · NC_067645.1 · 99,632–101,122 bp · +
trnI-GAU · NC_067645.1 · 101,420–102,437 bp · +
trnA-UGC · NC_067645.1 · 102,502–103,380 bp · +
rrn23 · NC_067645.1 · 103,552–106,362 bp · +
rrn4.5 · NC_067645.1 · 106,461–106,563 bp · +
rrn5 · NC_067645.1 · 106,819–106,939 bp · +
trnR-ACG · NC_067645.1 · 107,183–107,256 bp · +
ycf1 · NC_067645.1 · 108,236–109,366 bp · +
rpl32 · NC_067645.1 · 111,967–112,137 bp · +
trnL-UAG · NC_067645.1 · 112,901–112,980 bp · +
ccsA · NC_067645.1 · 113,069–114,040 bp · +
trnN-GUU · NC_067645.1 · 128,376–128,447 bp · +
rps7 · NC_067645.1 · 139,445–139,912 bp · +
ndhB · NC_067645.1 · 140,183–142,390 bp · +
trnL-CAA · NC_067645.1 · 142,962–143,042 bp · +
trnI-CAU · NC_067645.1 · 150,567–150,640 bp · +
rpl23 · NC_067645.1 · 150,806–151,087 bp · +
rpl2 · NC_067645.1 · 151,106–152,584 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Isodon angustifolius
ANNOTATED PLASTOME
NC_067645.1
152,694 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
ATP synthase
Ribosomal protein
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38174 76347 114520 152694 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK ON978_pgp086 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 11 85 75 Locate
psbA gene − 393 1451 1059 Locate
trnK-UUU gene − 1683 4263 2581 Locate
matK gene − 2003 3523 1521 Locate
ON978_pgp086 gene − 4789 5926 1138 Locate
trnQ-UUG gene − 6873 6944 72 Locate
psbK gene + 7338 7523 186 Locate
psbI gene + 7910 8020 111 Locate
trnS-GCU gene − 8176 8263 88 Locate
trnG-UCC gene + 9047 9806 760 Locate
trnR-UCU gene + 9997 10068 72 Locate
atpA gene − 10172 11695 1524 Locate
atpF gene − 11808 13053 1246 Locate
atpH gene − 13345 13590 246 Locate
atpI gene − 14591 15334 744 Locate
rps2 gene − 15560 16270 711 Locate
rpoC2 gene − 16485 20666 4182 Locate
rpoC1 gene − 20831 23664 2834 Locate
rpoB gene − 23691 26903 3213 Locate
trnC-GCA gene + 28088 28158 71 Locate
petN gene + 28321 28410 90 Locate
psbM gene − 29403 29507 105 Locate
trnD-GUC gene − 30026 30099 74 Locate
trnY-GUA gene − 30210 30293 84 Locate
trnE-UUC gene − 30379 30451 73 Locate
trnT-GGU gene + 31060 31131 72 Locate
psbD gene + 32456 33517 1062 Locate
psbC gene + 33465 34886 1422 Locate
trnS-UGA gene − 35122 35214 93 Locate
psbZ gene + 35555 35743 189 Locate
trnG-GCC gene + 35988 36058 71 Locate
trnfM-CAU gene − 36247 36320 74 Locate
rps14 gene − 36466 36768 303 Locate
psaB gene − 36891 39095 2205 Locate
psaA gene − 39121 41373 2253 Locate
ycf3 gene − 42135 44082 1948 Locate
trnS-GGA gene + 44947 45033 87 Locate
rps4 gene − 45330 45935 606 Locate
trnT-UGU gene − 46359 46431 73 Locate
trnL-UAA gene + 47118 47682 565 Locate
trnF-GAA gene + 47976 48048 73 Locate
ndhJ gene − 48716 49192 477 Locate
ndhK gene − 49303 49980 678 Locate
ndhC gene − 50032 50394 363 Locate
trnV-UAC gene − 51347 52002 656 Locate
trnM-CAU gene + 52183 52255 73 Locate
atpE gene − 52456 52857 402 Locate
atpB gene − 52854 54350 1497 Locate
rbcL gene + 55143 56576 1434 Locate
accD gene + 57281 58762 1482 Locate
psaI gene + 59464 59574 111 Locate
ycf4 gene + 60020 60574 555 Locate
cemA gene + 61165 61854 690 Locate
petA gene + 62069 63031 963 Locate
psbJ gene − 64069 64191 123 Locate
psbL gene − 64326 64442 117 Locate
psbF gene − 64466 64585 120 Locate
psbE gene − 64600 64851 252 Locate
petL gene + 65744 65839 96 Locate
petG gene + 66014 66127 114 Locate
trnW-CCA gene − 66250 66323 74 Locate
trnP-UGG gene − 66492 66565 74 Locate
psaJ gene + 66847 66981 135 Locate
rpl33 gene + 67443 67643 201 Locate
rps18 gene + 67810 68115 306 Locate
rpl20 gene − 68350 68736 387 Locate
rps12 gene − 69471 69584 114 Locate
clpP gene − 69703 71617 1915 Locate
psbB gene + 72090 73616 1527 Locate
psbT gene + 73800 73901 102 Locate
psbN gene − 73967 74098 132 Locate
psbH gene + 74204 74422 219 Locate
petB gene + 74548 75914 1367 Locate
petD gene + 76103 77295 1193 Locate
rpoA gene − 77472 78479 1008 Locate
rps11 gene − 78551 78967 417 Locate
rpl36 gene − 79083 79196 114 Locate
infA gene − 79292 79525 234 Locate
rps8 gene − 79651 80055 405 Locate
rpl14 gene − 80238 80606 369 Locate
rpl16 gene − 80740 82007 1268 Locate
rps3 gene − 82156 82818 663 Locate
rpl22 gene − 82803 83276 474 Locate
rps19 gene − 83340 83618 279 Locate
rpl2 gene − 83686 85164 1479 Locate
rpl23 gene − 85183 85464 282 Locate
trnI-CAU gene − 85630 85703 74 Locate
ycf2 gene + 85798 92628 6831 Locate
ycf15 gene + 92818 92967 150 Locate
trnL-CAA gene − 93228 93308 81 Locate
ndhB gene − 93880 96087 2208 Locate
rps7 gene − 96358 96825 468 Locate
rps12 gene − 96879 97671 793 Locate
trnV-GAC gene + 99334 99405 72 Locate
rrn16 gene + 99632 101122 1491 Locate
trnI-GAU gene + 101420 102437 1018 Locate
trnA-UGC gene + 102502 103380 879 Locate
rrn23 gene + 103552 106362 2811 Locate
rrn4.5 gene + 106461 106563 103 Locate
rrn5 gene + 106819 106939 121 Locate
trnR-ACG gene + 107183 107256 74 Locate
trnN-GUU gene − 107823 107894 72 Locate
ycf1 gene + 108236 109366 1131 Locate
ndhF gene − 109260 111491 2232 Locate
rpl32 gene + 111967 112137 171 Locate
trnL-UAG gene + 112901 112980 80 Locate
ccsA gene + 113069 114040 972 Locate
ndhD gene − 114266 115801 1536 Locate
psaC gene − 115892 116137 246 Locate
ndhE gene − 116393 116698 306 Locate
ndhG gene − 116913 117443 531 Locate
ndhI gene − 117802 118308 507 Locate
ndhA gene − 118389 120512 2124 Locate
ndhH gene − 120514 121695 1182 Locate
rps15 gene − 121810 122082 273 Locate
ycf1 gene − 122512 128034 5523 Locate
trnN-GUU gene + 128376 128447 72 Locate
trnR-ACG gene − 129014 129087 74 Locate
rrn5 gene − 129331 129451 121 Locate
rrn4.5 gene − 129707 129809 103 Locate
rrn23 gene − 129908 132718 2811 Locate
trnA-UGC gene − 132890 133768 879 Locate
trnI-GAU gene − 133833 134850 1018 Locate
rrn16 gene − 135148 136638 1491 Locate
trnV-GAC gene − 136865 136936 72 Locate
rps12 gene + 138599 139391 793 Locate
rps7 gene + 139445 139912 468 Locate
ndhB gene + 140183 142390 2208 Locate
trnL-CAA gene + 142962 143042 81 Locate
ycf15 gene − 143303 143452 150 Locate
ycf2 gene − 143642 150472 6831 Locate
trnI-CAU gene + 150567 150640 74 Locate
rpl23 gene + 150806 151087 282 Locate
rpl2 gene + 151106 152584 1479 Locate
Status Available
Accession NC_067645.1
Length 152,694 bp
GC content 37.6%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 16 Atp Synthase 6 Ribosomal Protein 25 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources