Isodon atroruber chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · NC_067647.1 · 11–85 bp · −
psbA · NC_067647.1 · 317–1,375 bp · −
trnK-UUU · NC_067647.1 · 1,607–4,187 bp · −
matK · NC_067647.1 · 1,927–3,447 bp · −
ON977_pgp086 · NC_067647.1 · 4,726–5,867 bp · −
trnQ-UUG · NC_067647.1 · 6,714–6,785 bp · −
trnS-GCU · NC_067647.1 · 7,882–7,969 bp · −
atpA · NC_067647.1 · 9,761–11,284 bp · −
atpF · NC_067647.1 · 11,384–12,632 bp · −
atpH · NC_067647.1 · 12,924–13,169 bp · −
atpI · NC_067647.1 · 14,120–14,863 bp · −
rps2 · NC_067647.1 · 15,089–15,799 bp · −
rpoC2 · NC_067647.1 · 16,013–20,200 bp · −
rpoC1 · NC_067647.1 · 20,365–23,198 bp · −
rpoB · NC_067647.1 · 23,225–26,437 bp · −
psbM · NC_067647.1 · 28,949–29,053 bp · −
trnD-GUC · NC_067647.1 · 29,572–29,645 bp · −
trnY-GUA · NC_067647.1 · 29,756–29,839 bp · −
trnE-UUC · NC_067647.1 · 29,917–29,989 bp · −
trnS-UGA · NC_067647.1 · 34,680–34,772 bp · −
trnfM-CAU · NC_067647.1 · 35,780–35,853 bp · −
rps14 · NC_067647.1 · 35,998–36,300 bp · −
psaB · NC_067647.1 · 36,423–38,627 bp · −
psaA · NC_067647.1 · 38,653–40,905 bp · −
ycf3 · NC_067647.1 · 41,705–43,666 bp · −
rps4 · NC_067647.1 · 44,886–45,491 bp · −
trnT-UGU · NC_067647.1 · 45,905–45,977 bp · −
ndhJ · NC_067647.1 · 48,270–48,746 bp · −
ndhK · NC_067647.1 · 48,857–49,534 bp · −
ndhC · NC_067647.1 · 49,586–49,948 bp · −
trnV-UAC · NC_067647.1 · 50,903–51,560 bp · −
atpE · NC_067647.1 · 52,019–52,420 bp · −
atpB · NC_067647.1 · 52,417–53,913 bp · −
psbJ · NC_067647.1 · 63,588–63,710 bp · −
psbL · NC_067647.1 · 63,845–63,961 bp · −
psbF · NC_067647.1 · 63,985–64,104 bp · −
psbE · NC_067647.1 · 64,119–64,370 bp · −
trnW-CCA · NC_067647.1 · 65,770–65,843 bp · −
trnP-UGG · NC_067647.1 · 66,013–66,086 bp · −
rpl20 · NC_067647.1 · 67,865–68,251 bp · −
rps12 · NC_067647.1 · 68,983–69,096 bp · −
rps12 · NC_067647.1 · 96,357–97,150 bp · −
clpP · NC_067647.1 · 69,215–71,136 bp · −
psbN · NC_067647.1 · 73,486–73,617 bp · −
rpoA · NC_067647.1 · 76,991–77,998 bp · −
rps11 · NC_067647.1 · 78,070–78,486 bp · −
rpl36 · NC_067647.1 · 78,596–78,709 bp · −
infA · NC_067647.1 · 78,805–79,038 bp · −
rps8 · NC_067647.1 · 79,164–79,568 bp · −
rpl14 · NC_067647.1 · 79,743–80,111 bp · −
rpl16 · NC_067647.1 · 80,248–81,515 bp · −
rps3 · NC_067647.1 · 81,668–82,330 bp · −
rpl22 · NC_067647.1 · 82,315–82,788 bp · −
rps19 · NC_067647.1 · 82,853–83,131 bp · −
rpl2 · NC_067647.1 · 83,200–84,678 bp · −
rpl23 · NC_067647.1 · 84,697–84,978 bp · −
trnI-CAU · NC_067647.1 · 85,144–85,217 bp · −
trnL-CAA · NC_067647.1 · 92,715–92,795 bp · −
ndhB · NC_067647.1 · 93,358–95,565 bp · −
rps7 · NC_067647.1 · 95,836–96,303 bp · −
trnN-GUU · NC_067647.1 · 107,311–107,382 bp · −
ndhF · NC_067647.1 · 108,747–110,978 bp · −
ndhD · NC_067647.1 · 113,752–115,281 bp · −
psaC · NC_067647.1 · 115,372–115,617 bp · −
ndhE · NC_067647.1 · 115,873–116,178 bp · −
ndhG · NC_067647.1 · 116,393–116,923 bp · −
ndhI · NC_067647.1 · 117,292–117,798 bp · −
ndhA · NC_067647.1 · 117,879–119,988 bp · −
ndhH · NC_067647.1 · 119,990–121,171 bp · −
rps15 · NC_067647.1 · 121,286–121,549 bp · −
ycf1 · NC_067647.1 · 121,989–127,553 bp · −
trnR-ACG · NC_067647.1 · 128,538–128,611 bp · −
rrn5 · NC_067647.1 · 128,855–128,975 bp · −
rrn4.5 · NC_067647.1 · 129,231–129,333 bp · −
rrn23 · NC_067647.1 · 129,432–132,242 bp · −
trnA-UGC · NC_067647.1 · 132,406–133,284 bp · −
trnI-GAU · NC_067647.1 · 133,349–134,367 bp · −
rrn16 · NC_067647.1 · 134,665–136,155 bp · −
trnV-GAC · NC_067647.1 · 136,382–136,453 bp · −
ycf15 · NC_067647.1 · 142,822–142,971 bp · −
ycf2 · NC_067647.1 · 143,161–149,964 bp · −
psbK · NC_067647.1 · 7,180–7,365 bp · +
psbI · NC_067647.1 · 7,755–7,865 bp · +
trnG-UCC · NC_067647.1 · 8,636–9,395 bp · +
trnR-UCU · NC_067647.1 · 9,585–9,656 bp · +
trnC-GCA · NC_067647.1 · 27,629–27,699 bp · +
petN · NC_067647.1 · 27,862–27,951 bp · +
trnT-GGU · NC_067647.1 · 30,571–30,642 bp · +
psbD · NC_067647.1 · 32,014–33,075 bp · +
psbC · NC_067647.1 · 33,023–34,444 bp · +
psbZ · NC_067647.1 · 35,113–35,301 bp · +
trnG-GCC · NC_067647.1 · 35,537–35,607 bp · +
trnS-GGA · NC_067647.1 · 44,511–44,597 bp · +
trnL-UAA · NC_067647.1 · 46,671–47,214 bp · +
trnF-GAA · NC_067647.1 · 47,514–47,586 bp · +
trnM-CAU · NC_067647.1 · 51,741–51,813 bp · +
rbcL · NC_067647.1 · 54,712–56,157 bp · +
accD · NC_067647.1 · 56,840–58,321 bp · +
psaI · NC_067647.1 · 59,020–59,130 bp · +
ycf4 · NC_067647.1 · 59,576–60,130 bp · +
cemA · NC_067647.1 · 60,716–61,405 bp · +
petA · NC_067647.1 · 61,620–62,582 bp · +
petL · NC_067647.1 · 65,264–65,359 bp · +
petG · NC_067647.1 · 65,534–65,647 bp · +
psaJ · NC_067647.1 · 66,370–66,504 bp · +
rpl33 · NC_067647.1 · 66,952–67,152 bp · +
rps18 · NC_067647.1 · 67,319–67,624 bp · +
rps12 · NC_067647.1 · 138,126–138,919 bp · +
psbB · NC_067647.1 · 71,609–73,135 bp · +
psbT · NC_067647.1 · 73,319–73,420 bp · +
psbH · NC_067647.1 · 73,723–73,941 bp · +
petB · NC_067647.1 · 74,076–75,432 bp · +
petD · NC_067647.1 · 75,621–76,814 bp · +
ycf2 · NC_067647.1 · 85,312–92,115 bp · +
ycf15 · NC_067647.1 · 92,305–92,454 bp · +
trnV-GAC · NC_067647.1 · 98,823–98,894 bp · +
rrn16 · NC_067647.1 · 99,121–100,611 bp · +
trnI-GAU · NC_067647.1 · 100,909–101,927 bp · +
trnA-UGC · NC_067647.1 · 101,992–102,870 bp · +
rrn23 · NC_067647.1 · 103,034–105,844 bp · +
rrn4.5 · NC_067647.1 · 105,943–106,045 bp · +
rrn5 · NC_067647.1 · 106,301–106,421 bp · +
trnR-ACG · NC_067647.1 · 106,665–106,738 bp · +
ycf1 · NC_067647.1 · 107,723–108,853 bp · +
rpl32 · NC_067647.1 · 111,463–111,633 bp · +
trnL-UAG · NC_067647.1 · 112,390–112,469 bp · +
ccsA · NC_067647.1 · 112,557–113,528 bp · +
trnN-GUU · NC_067647.1 · 127,894–127,965 bp · +
rps7 · NC_067647.1 · 138,973–139,440 bp · +
ndhB · NC_067647.1 · 139,711–141,918 bp · +
trnL-CAA · NC_067647.1 · 142,481–142,566 bp · +
trnI-CAU · NC_067647.1 · 150,059–150,132 bp · +
rpl23 · NC_067647.1 · 150,298–150,579 bp · +
rpl2 · NC_067647.1 · 150,598–152,076 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Isodon atroruber
ANNOTATED PLASTOME
NC_067647.1
152,187 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
ATP synthase
Ribosomal protein
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38047 76094 114140 152187 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK ON977_pgp086 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 11 85 75 Locate
psbA gene − 317 1375 1059 Locate
trnK-UUU gene − 1607 4187 2581 Locate
matK gene − 1927 3447 1521 Locate
ON977_pgp086 gene − 4726 5867 1142 Locate
trnQ-UUG gene − 6714 6785 72 Locate
psbK gene + 7180 7365 186 Locate
psbI gene + 7755 7865 111 Locate
trnS-GCU gene − 7882 7969 88 Locate
trnG-UCC gene + 8636 9395 760 Locate
trnR-UCU gene + 9585 9656 72 Locate
atpA gene − 9761 11284 1524 Locate
atpF gene − 11384 12632 1249 Locate
atpH gene − 12924 13169 246 Locate
atpI gene − 14120 14863 744 Locate
rps2 gene − 15089 15799 711 Locate
rpoC2 gene − 16013 20200 4188 Locate
rpoC1 gene − 20365 23198 2834 Locate
rpoB gene − 23225 26437 3213 Locate
trnC-GCA gene + 27629 27699 71 Locate
petN gene + 27862 27951 90 Locate
psbM gene − 28949 29053 105 Locate
trnD-GUC gene − 29572 29645 74 Locate
trnY-GUA gene − 29756 29839 84 Locate
trnE-UUC gene − 29917 29989 73 Locate
trnT-GGU gene + 30571 30642 72 Locate
psbD gene + 32014 33075 1062 Locate
psbC gene + 33023 34444 1422 Locate
trnS-UGA gene − 34680 34772 93 Locate
psbZ gene + 35113 35301 189 Locate
trnG-GCC gene + 35537 35607 71 Locate
trnfM-CAU gene − 35780 35853 74 Locate
rps14 gene − 35998 36300 303 Locate
psaB gene − 36423 38627 2205 Locate
psaA gene − 38653 40905 2253 Locate
ycf3 gene − 41705 43666 1962 Locate
trnS-GGA gene + 44511 44597 87 Locate
rps4 gene − 44886 45491 606 Locate
trnT-UGU gene − 45905 45977 73 Locate
trnL-UAA gene + 46671 47214 544 Locate
trnF-GAA gene + 47514 47586 73 Locate
ndhJ gene − 48270 48746 477 Locate
ndhK gene − 48857 49534 678 Locate
ndhC gene − 49586 49948 363 Locate
trnV-UAC gene − 50903 51560 658 Locate
trnM-CAU gene + 51741 51813 73 Locate
atpE gene − 52019 52420 402 Locate
atpB gene − 52417 53913 1497 Locate
rbcL gene + 54712 56157 1446 Locate
accD gene + 56840 58321 1482 Locate
psaI gene + 59020 59130 111 Locate
ycf4 gene + 59576 60130 555 Locate
cemA gene + 60716 61405 690 Locate
petA gene + 61620 62582 963 Locate
psbJ gene − 63588 63710 123 Locate
psbL gene − 63845 63961 117 Locate
psbF gene − 63985 64104 120 Locate
psbE gene − 64119 64370 252 Locate
petL gene + 65264 65359 96 Locate
petG gene + 65534 65647 114 Locate
trnW-CCA gene − 65770 65843 74 Locate
trnP-UGG gene − 66013 66086 74 Locate
psaJ gene + 66370 66504 135 Locate
rpl33 gene + 66952 67152 201 Locate
rps18 gene + 67319 67624 306 Locate
rpl20 gene − 67865 68251 387 Locate
rps12 gene − 68983 69096 114 Locate
clpP gene − 69215 71136 1922 Locate
psbB gene + 71609 73135 1527 Locate
psbT gene + 73319 73420 102 Locate
psbN gene − 73486 73617 132 Locate
psbH gene + 73723 73941 219 Locate
petB gene + 74076 75432 1357 Locate
petD gene + 75621 76814 1194 Locate
rpoA gene − 76991 77998 1008 Locate
rps11 gene − 78070 78486 417 Locate
rpl36 gene − 78596 78709 114 Locate
infA gene − 78805 79038 234 Locate
rps8 gene − 79164 79568 405 Locate
rpl14 gene − 79743 80111 369 Locate
rpl16 gene − 80248 81515 1268 Locate
rps3 gene − 81668 82330 663 Locate
rpl22 gene − 82315 82788 474 Locate
rps19 gene − 82853 83131 279 Locate
rpl2 gene − 83200 84678 1479 Locate
rpl23 gene − 84697 84978 282 Locate
trnI-CAU gene − 85144 85217 74 Locate
ycf2 gene + 85312 92115 6804 Locate
ycf15 gene + 92305 92454 150 Locate
trnL-CAA gene − 92715 92795 81 Locate
ndhB gene − 93358 95565 2208 Locate
rps7 gene − 95836 96303 468 Locate
rps12 gene − 96357 97150 794 Locate
trnV-GAC gene + 98823 98894 72 Locate
rrn16 gene + 99121 100611 1491 Locate
trnI-GAU gene + 100909 101927 1019 Locate
trnA-UGC gene + 101992 102870 879 Locate
rrn23 gene + 103034 105844 2811 Locate
rrn4.5 gene + 105943 106045 103 Locate
rrn5 gene + 106301 106421 121 Locate
trnR-ACG gene + 106665 106738 74 Locate
trnN-GUU gene − 107311 107382 72 Locate
ycf1 gene + 107723 108853 1131 Locate
ndhF gene − 108747 110978 2232 Locate
rpl32 gene + 111463 111633 171 Locate
trnL-UAG gene + 112390 112469 80 Locate
ccsA gene + 112557 113528 972 Locate
ndhD gene − 113752 115281 1530 Locate
psaC gene − 115372 115617 246 Locate
ndhE gene − 115873 116178 306 Locate
ndhG gene − 116393 116923 531 Locate
ndhI gene − 117292 117798 507 Locate
ndhA gene − 117879 119988 2110 Locate
ndhH gene − 119990 121171 1182 Locate
rps15 gene − 121286 121549 264 Locate
ycf1 gene − 121989 127553 5565 Locate
trnN-GUU gene + 127894 127965 72 Locate
trnR-ACG gene − 128538 128611 74 Locate
rrn5 gene − 128855 128975 121 Locate
rrn4.5 gene − 129231 129333 103 Locate
rrn23 gene − 129432 132242 2811 Locate
trnA-UGC gene − 132406 133284 879 Locate
trnI-GAU gene − 133349 134367 1019 Locate
rrn16 gene − 134665 136155 1491 Locate
trnV-GAC gene − 136382 136453 72 Locate
rps12 gene + 138126 138919 794 Locate
rps7 gene + 138973 139440 468 Locate
ndhB gene + 139711 141918 2208 Locate
trnL-CAA gene + 142481 142566 86 Locate
ycf15 gene − 142822 142971 150 Locate
ycf2 gene − 143161 149964 6804 Locate
trnI-CAU gene + 150059 150132 74 Locate
rpl23 gene + 150298 150579 282 Locate
rpl2 gene + 150598 152076 1479 Locate
Status Available
Accession NC_067647.1
Length 152,187 bp
GC content 37.6%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 16 Atp Synthase 6 Ribosomal Protein 25 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources