Isodon aurantiacus chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · NC_067648.1 · 11–85 bp · −
psbA · NC_067648.1 · 388–1,446 bp · −
trnK-UUU · NC_067648.1 · 1,678–4,264 bp · −
matK · NC_067648.1 · 2,004–3,524 bp · −
ON981_pgp086 · NC_067648.1 · 4,790–5,935 bp · −
trnQ-UUG · NC_067648.1 · 6,880–6,951 bp · −
trnS-GCU · NC_067648.1 · 8,183–8,270 bp · −
atpA · NC_067648.1 · 10,164–11,687 bp · −
atpF · NC_067648.1 · 11,798–13,043 bp · −
atpH · NC_067648.1 · 13,335–13,580 bp · −
atpI · NC_067648.1 · 14,581–15,324 bp · −
rps2 · NC_067648.1 · 15,550–16,260 bp · −
rpoC2 · NC_067648.1 · 16,478–20,659 bp · −
rpoC1 · NC_067648.1 · 20,824–23,657 bp · −
rpoB · NC_067648.1 · 23,684–26,896 bp · −
psbM · NC_067648.1 · 29,393–29,497 bp · −
trnD-GUC · NC_067648.1 · 30,016–30,089 bp · −
trnY-GUA · NC_067648.1 · 30,200–30,283 bp · −
trnE-UUC · NC_067648.1 · 30,361–30,433 bp · −
trnS-UGA · NC_067648.1 · 35,098–35,190 bp · −
trnfM-CAU · NC_067648.1 · 36,225–36,298 bp · −
rps14 · NC_067648.1 · 36,444–36,746 bp · −
psaB · NC_067648.1 · 36,869–39,073 bp · −
psaA · NC_067648.1 · 39,099–41,351 bp · −
ycf3 · NC_067648.1 · 42,125–44,071 bp · −
rps4 · NC_067648.1 · 45,318–45,923 bp · −
trnT-UGU · NC_067648.1 · 46,348–46,420 bp · −
ndhJ · NC_067648.1 · 48,705–49,181 bp · −
ndhK · NC_067648.1 · 49,328–49,969 bp · −
ndhC · NC_067648.1 · 50,021–50,383 bp · −
trnV-UAC · NC_067648.1 · 51,340–51,995 bp · −
atpE · NC_067648.1 · 52,449–52,850 bp · −
atpB · NC_067648.1 · 52,847–54,343 bp · −
psbJ · NC_067648.1 · 64,058–64,180 bp · −
psbL · NC_067648.1 · 64,315–64,431 bp · −
psbF · NC_067648.1 · 64,455–64,574 bp · −
psbE · NC_067648.1 · 64,589–64,840 bp · −
trnW-CCA · NC_067648.1 · 66,239–66,312 bp · −
trnP-UGG · NC_067648.1 · 66,481–66,554 bp · −
rpl20 · NC_067648.1 · 68,346–68,732 bp · −
rps12 · NC_067648.1 · 69,465–69,578 bp · −
rps12 · NC_067648.1 · 96,875–97,667 bp · −
clpP · NC_067648.1 · 69,697–71,613 bp · −
psbN · NC_067648.1 · 73,964–74,095 bp · −
rpoA · NC_067648.1 · 77,471–78,478 bp · −
rps11 · NC_067648.1 · 78,550–78,966 bp · −
rpl36 · NC_067648.1 · 79,082–79,195 bp · −
infA · NC_067648.1 · 79,291–79,524 bp · −
rps8 · NC_067648.1 · 79,651–80,055 bp · −
rpl14 · NC_067648.1 · 80,238–80,606 bp · −
rpl16 · NC_067648.1 · 80,740–82,007 bp · −
rps3 · NC_067648.1 · 82,151–82,813 bp · −
rpl22 · NC_067648.1 · 82,798–83,271 bp · −
rps19 · NC_067648.1 · 83,336–83,614 bp · −
rpl2 · NC_067648.1 · 83,682–85,160 bp · −
rpl23 · NC_067648.1 · 85,179–85,460 bp · −
trnI-CAU · NC_067648.1 · 85,626–85,699 bp · −
trnL-CAA · NC_067648.1 · 93,224–93,304 bp · −
ndhB · NC_067648.1 · 93,876–96,083 bp · −
rps7 · NC_067648.1 · 96,354–96,821 bp · −
trnN-GUU · NC_067648.1 · 107,819–107,890 bp · −
ndhF · NC_067648.1 · 109,256–111,487 bp · −
ndhD · NC_067648.1 · 114,270–115,799 bp · −
psaC · NC_067648.1 · 115,890–116,135 bp · −
ndhE · NC_067648.1 · 116,391–116,696 bp · −
ndhG · NC_067648.1 · 116,911–117,441 bp · −
ndhI · NC_067648.1 · 117,800–118,306 bp · −
ndhA · NC_067648.1 · 118,387–120,511 bp · −
ndhH · NC_067648.1 · 120,513–121,694 bp · −
rps15 · NC_067648.1 · 121,809–122,081 bp · −
ycf1 · NC_067648.1 · 122,511–128,033 bp · −
trnR-ACG · NC_067648.1 · 129,013–129,086 bp · −
rrn5 · NC_067648.1 · 129,330–129,450 bp · −
rrn4.5 · NC_067648.1 · 129,706–129,808 bp · −
rrn23 · NC_067648.1 · 129,907–132,717 bp · −
trnA-UGC · NC_067648.1 · 132,889–133,767 bp · −
trnI-GAU · NC_067648.1 · 133,832–134,850 bp · −
rrn16 · NC_067648.1 · 135,148–136,638 bp · −
trnV-GAC · NC_067648.1 · 136,865–136,936 bp · −
ycf15 · NC_067648.1 · 143,302–143,451 bp · −
ycf2 · NC_067648.1 · 143,641–150,471 bp · −
psbK · NC_067648.1 · 7,345–7,530 bp · +
psbI · NC_067648.1 · 7,918–8,028 bp · +
trnG-UCC · NC_067648.1 · 9,039–9,798 bp · +
trnR-UCU · NC_067648.1 · 9,989–10,060 bp · +
trnC-GCA · NC_067648.1 · 28,079–28,149 bp · +
petN · NC_067648.1 · 28,312–28,401 bp · +
trnT-GGU · NC_067648.1 · 31,043–31,114 bp · +
psbD · NC_067648.1 · 32,432–33,493 bp · +
psbC · NC_067648.1 · 33,441–34,862 bp · +
psbZ · NC_067648.1 · 35,531–35,719 bp · +
trnG-GCC · NC_067648.1 · 35,964–36,034 bp · +
trnS-GGA · NC_067648.1 · 44,935–45,021 bp · +
trnL-UAA · NC_067648.1 · 47,107–47,671 bp · +
trnF-GAA · NC_067648.1 · 47,965–48,037 bp · +
trnM-CAU · NC_067648.1 · 52,176–52,248 bp · +
rbcL · NC_067648.1 · 55,131–56,564 bp · +
accD · NC_067648.1 · 57,269–58,750 bp · +
psaI · NC_067648.1 · 59,451–59,561 bp · +
ycf4 · NC_067648.1 · 60,008–60,562 bp · +
cemA · NC_067648.1 · 61,154–61,843 bp · +
petA · NC_067648.1 · 62,058–63,020 bp · +
petL · NC_067648.1 · 65,733–65,828 bp · +
petG · NC_067648.1 · 66,003–66,116 bp · +
psaJ · NC_067648.1 · 66,841–66,975 bp · +
rpl33 · NC_067648.1 · 67,438–67,638 bp · +
rps18 · NC_067648.1 · 67,805–68,110 bp · +
rps12 · NC_067648.1 · 138,598–139,390 bp · +
psbB · NC_067648.1 · 72,086–73,612 bp · +
psbT · NC_067648.1 · 73,797–73,898 bp · +
psbH · NC_067648.1 · 74,201–74,419 bp · +
petB · NC_067648.1 · 74,545–75,913 bp · +
petD · NC_067648.1 · 76,102–77,294 bp · +
ycf2 · NC_067648.1 · 85,794–92,624 bp · +
ycf15 · NC_067648.1 · 92,814–92,963 bp · +
trnV-GAC · NC_067648.1 · 99,329–99,400 bp · +
rrn16 · NC_067648.1 · 99,627–101,117 bp · +
trnI-GAU · NC_067648.1 · 101,415–102,433 bp · +
trnA-UGC · NC_067648.1 · 102,498–103,376 bp · +
rrn23 · NC_067648.1 · 103,548–106,358 bp · +
rrn4.5 · NC_067648.1 · 106,457–106,559 bp · +
rrn5 · NC_067648.1 · 106,815–106,935 bp · +
trnR-ACG · NC_067648.1 · 107,179–107,252 bp · +
ycf1 · NC_067648.1 · 108,232–109,362 bp · +
rpl32 · NC_067648.1 · 111,963–112,133 bp · +
trnL-UAG · NC_067648.1 · 112,898–112,977 bp · +
ccsA · NC_067648.1 · 113,066–114,037 bp · +
trnN-GUU · NC_067648.1 · 128,375–128,446 bp · +
rps7 · NC_067648.1 · 139,444–139,911 bp · +
ndhB · NC_067648.1 · 140,182–142,389 bp · +
trnL-CAA · NC_067648.1 · 142,961–143,041 bp · +
trnI-CAU · NC_067648.1 · 150,566–150,639 bp · +
rpl23 · NC_067648.1 · 150,805–151,086 bp · +
rpl2 · NC_067648.1 · 151,105–152,583 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Isodon aurantiacus
ANNOTATED PLASTOME
NC_067648.1
152,693 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
ATP synthase
Ribosomal protein
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38173 76346 114520 152693 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK ON981_pgp086 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 11 85 75 Locate
psbA gene − 388 1446 1059 Locate
trnK-UUU gene − 1678 4264 2587 Locate
matK gene − 2004 3524 1521 Locate
ON981_pgp086 gene − 4790 5935 1146 Locate
trnQ-UUG gene − 6880 6951 72 Locate
psbK gene + 7345 7530 186 Locate
psbI gene + 7918 8028 111 Locate
trnS-GCU gene − 8183 8270 88 Locate
trnG-UCC gene + 9039 9798 760 Locate
trnR-UCU gene + 9989 10060 72 Locate
atpA gene − 10164 11687 1524 Locate
atpF gene − 11798 13043 1246 Locate
atpH gene − 13335 13580 246 Locate
atpI gene − 14581 15324 744 Locate
rps2 gene − 15550 16260 711 Locate
rpoC2 gene − 16478 20659 4182 Locate
rpoC1 gene − 20824 23657 2834 Locate
rpoB gene − 23684 26896 3213 Locate
trnC-GCA gene + 28079 28149 71 Locate
petN gene + 28312 28401 90 Locate
psbM gene − 29393 29497 105 Locate
trnD-GUC gene − 30016 30089 74 Locate
trnY-GUA gene − 30200 30283 84 Locate
trnE-UUC gene − 30361 30433 73 Locate
trnT-GGU gene + 31043 31114 72 Locate
psbD gene + 32432 33493 1062 Locate
psbC gene + 33441 34862 1422 Locate
trnS-UGA gene − 35098 35190 93 Locate
psbZ gene + 35531 35719 189 Locate
trnG-GCC gene + 35964 36034 71 Locate
trnfM-CAU gene − 36225 36298 74 Locate
rps14 gene − 36444 36746 303 Locate
psaB gene − 36869 39073 2205 Locate
psaA gene − 39099 41351 2253 Locate
ycf3 gene − 42125 44071 1947 Locate
trnS-GGA gene + 44935 45021 87 Locate
rps4 gene − 45318 45923 606 Locate
trnT-UGU gene − 46348 46420 73 Locate
trnL-UAA gene + 47107 47671 565 Locate
trnF-GAA gene + 47965 48037 73 Locate
ndhJ gene − 48705 49181 477 Locate
ndhK gene − 49328 49969 642 Locate
ndhC gene − 50021 50383 363 Locate
trnV-UAC gene − 51340 51995 656 Locate
trnM-CAU gene + 52176 52248 73 Locate
atpE gene − 52449 52850 402 Locate
atpB gene − 52847 54343 1497 Locate
rbcL gene + 55131 56564 1434 Locate
accD gene + 57269 58750 1482 Locate
psaI gene + 59451 59561 111 Locate
ycf4 gene + 60008 60562 555 Locate
cemA gene + 61154 61843 690 Locate
petA gene + 62058 63020 963 Locate
psbJ gene − 64058 64180 123 Locate
psbL gene − 64315 64431 117 Locate
psbF gene − 64455 64574 120 Locate
psbE gene − 64589 64840 252 Locate
petL gene + 65733 65828 96 Locate
petG gene + 66003 66116 114 Locate
trnW-CCA gene − 66239 66312 74 Locate
trnP-UGG gene − 66481 66554 74 Locate
psaJ gene + 66841 66975 135 Locate
rpl33 gene + 67438 67638 201 Locate
rps18 gene + 67805 68110 306 Locate
rpl20 gene − 68346 68732 387 Locate
rps12 gene − 69465 69578 114 Locate
clpP gene − 69697 71613 1917 Locate
psbB gene + 72086 73612 1527 Locate
psbT gene + 73797 73898 102 Locate
psbN gene − 73964 74095 132 Locate
psbH gene + 74201 74419 219 Locate
petB gene + 74545 75913 1369 Locate
petD gene + 76102 77294 1193 Locate
rpoA gene − 77471 78478 1008 Locate
rps11 gene − 78550 78966 417 Locate
rpl36 gene − 79082 79195 114 Locate
infA gene − 79291 79524 234 Locate
rps8 gene − 79651 80055 405 Locate
rpl14 gene − 80238 80606 369 Locate
rpl16 gene − 80740 82007 1268 Locate
rps3 gene − 82151 82813 663 Locate
rpl22 gene − 82798 83271 474 Locate
rps19 gene − 83336 83614 279 Locate
rpl2 gene − 83682 85160 1479 Locate
rpl23 gene − 85179 85460 282 Locate
trnI-CAU gene − 85626 85699 74 Locate
ycf2 gene + 85794 92624 6831 Locate
ycf15 gene + 92814 92963 150 Locate
trnL-CAA gene − 93224 93304 81 Locate
ndhB gene − 93876 96083 2208 Locate
rps7 gene − 96354 96821 468 Locate
rps12 gene − 96875 97667 793 Locate
trnV-GAC gene + 99329 99400 72 Locate
rrn16 gene + 99627 101117 1491 Locate
trnI-GAU gene + 101415 102433 1019 Locate
trnA-UGC gene + 102498 103376 879 Locate
rrn23 gene + 103548 106358 2811 Locate
rrn4.5 gene + 106457 106559 103 Locate
rrn5 gene + 106815 106935 121 Locate
trnR-ACG gene + 107179 107252 74 Locate
trnN-GUU gene − 107819 107890 72 Locate
ycf1 gene + 108232 109362 1131 Locate
ndhF gene − 109256 111487 2232 Locate
rpl32 gene + 111963 112133 171 Locate
trnL-UAG gene + 112898 112977 80 Locate
ccsA gene + 113066 114037 972 Locate
ndhD gene − 114270 115799 1530 Locate
psaC gene − 115890 116135 246 Locate
ndhE gene − 116391 116696 306 Locate
ndhG gene − 116911 117441 531 Locate
ndhI gene − 117800 118306 507 Locate
ndhA gene − 118387 120511 2125 Locate
ndhH gene − 120513 121694 1182 Locate
rps15 gene − 121809 122081 273 Locate
ycf1 gene − 122511 128033 5523 Locate
trnN-GUU gene + 128375 128446 72 Locate
trnR-ACG gene − 129013 129086 74 Locate
rrn5 gene − 129330 129450 121 Locate
rrn4.5 gene − 129706 129808 103 Locate
rrn23 gene − 129907 132717 2811 Locate
trnA-UGC gene − 132889 133767 879 Locate
trnI-GAU gene − 133832 134850 1019 Locate
rrn16 gene − 135148 136638 1491 Locate
trnV-GAC gene − 136865 136936 72 Locate
rps12 gene + 138598 139390 793 Locate
rps7 gene + 139444 139911 468 Locate
ndhB gene + 140182 142389 2208 Locate
trnL-CAA gene + 142961 143041 81 Locate
ycf15 gene − 143302 143451 150 Locate
ycf2 gene − 143641 150471 6831 Locate
trnI-CAU gene + 150566 150639 74 Locate
rpl23 gene + 150805 151086 282 Locate
rpl2 gene + 151105 152583 1479 Locate
Status Available
Accession NC_067648.1
Length 152,693 bp
GC content 37.6%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 16 Atp Synthase 6 Ribosomal Protein 25 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources