Isodon bifidocalyx chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · NC_067670.1 · 11–85 bp · −
psbA · NC_067670.1 · 397–1,455 bp · −
trnK-UUU · NC_067670.1 · 1,687–4,267 bp · −
matK · NC_067670.1 · 2,007–3,527 bp · −
OOB10_pgp086 · NC_067670.1 · 4,794–5,939 bp · −
trnQ-UUG · NC_067670.1 · 6,886–6,957 bp · −
trnS-GCU · NC_067670.1 · 8,192–8,279 bp · −
atpA · NC_067670.1 · 10,166–11,689 bp · −
atpF · NC_067670.1 · 11,798–13,044 bp · −
atpH · NC_067670.1 · 13,336–13,581 bp · −
atpI · NC_067670.1 · 14,582–15,325 bp · −
rps2 · NC_067670.1 · 15,556–16,266 bp · −
rpoC2 · NC_067670.1 · 16,484–20,665 bp · −
rpoC1 · NC_067670.1 · 20,830–23,663 bp · −
rpoB · NC_067670.1 · 23,690–26,902 bp · −
psbM · NC_067670.1 · 28,940–29,044 bp · −
trnD-GUC · NC_067670.1 · 29,555–29,628 bp · −
trnY-GUA · NC_067670.1 · 29,739–29,822 bp · −
trnE-UUC · NC_067670.1 · 29,900–29,972 bp · −
trnS-UGA · NC_067670.1 · 34,640–34,732 bp · −
trnfM-CAU · NC_067670.1 · 35,764–35,837 bp · −
rps14 · NC_067670.1 · 35,983–36,285 bp · −
psaB · NC_067670.1 · 36,408–38,612 bp · −
psaA · NC_067670.1 · 38,638–40,890 bp · −
ycf3 · NC_067670.1 · 41,666–43,613 bp · −
rps4 · NC_067670.1 · 44,858–45,463 bp · −
trnT-UGU · NC_067670.1 · 45,888–45,960 bp · −
ndhJ · NC_067670.1 · 48,245–48,721 bp · −
ndhK · NC_067670.1 · 48,832–49,509 bp · −
ndhC · NC_067670.1 · 49,561–49,923 bp · −
trnV-UAC · NC_067670.1 · 50,880–51,535 bp · −
atpE · NC_067670.1 · 51,989–52,390 bp · −
atpB · NC_067670.1 · 52,387–53,883 bp · −
psbJ · NC_067670.1 · 63,606–63,728 bp · −
psbL · NC_067670.1 · 63,863–63,979 bp · −
psbF · NC_067670.1 · 64,003–64,122 bp · −
psbE · NC_067670.1 · 64,137–64,388 bp · −
trnW-CCA · NC_067670.1 · 65,786–65,859 bp · −
trnP-UGG · NC_067670.1 · 66,028–66,101 bp · −
rpl20 · NC_067670.1 · 67,947–68,333 bp · −
rps12 · NC_067670.1 · 69,066–69,179 bp · −
rps12 · NC_067670.1 · 96,474–97,266 bp · −
clpP · NC_067670.1 · 69,298–71,214 bp · −
psbN · NC_067670.1 · 73,565–73,696 bp · −
rpoA · NC_067670.1 · 77,070–78,077 bp · −
rps11 · NC_067670.1 · 78,149–78,565 bp · −
rpl36 · NC_067670.1 · 78,681–78,794 bp · −
infA · NC_067670.1 · 78,890–79,123 bp · −
rps8 · NC_067670.1 · 79,250–79,654 bp · −
rpl14 · NC_067670.1 · 79,837–80,205 bp · −
rpl16 · NC_067670.1 · 80,339–81,606 bp · −
rps3 · NC_067670.1 · 81,750–82,412 bp · −
rpl22 · NC_067670.1 · 82,397–82,870 bp · −
rps19 · NC_067670.1 · 82,935–83,213 bp · −
rpl2 · NC_067670.1 · 83,281–84,759 bp · −
rpl23 · NC_067670.1 · 84,778–85,059 bp · −
trnI-CAU · NC_067670.1 · 85,225–85,298 bp · −
trnL-CAA · NC_067670.1 · 92,823–92,903 bp · −
ndhB · NC_067670.1 · 93,475–95,682 bp · −
rps7 · NC_067670.1 · 95,953–96,420 bp · −
trnN-GUU · NC_067670.1 · 107,418–107,489 bp · −
ndhF · NC_067670.1 · 108,855–111,086 bp · −
ndhD · NC_067670.1 · 113,865–115,391 bp · −
psaC · NC_067670.1 · 115,482–115,727 bp · −
ndhE · NC_067670.1 · 115,983–116,288 bp · −
ndhG · NC_067670.1 · 116,503–117,033 bp · −
ndhI · NC_067670.1 · 117,392–117,898 bp · −
ndhA · NC_067670.1 · 117,979–120,103 bp · −
ndhH · NC_067670.1 · 120,105–121,286 bp · −
rps15 · NC_067670.1 · 121,401–121,673 bp · −
ycf1 · NC_067670.1 · 122,103–127,625 bp · −
trnR-ACG · NC_067670.1 · 128,605–128,678 bp · −
rrn5 · NC_067670.1 · 128,922–129,042 bp · −
rrn4.5 · NC_067670.1 · 129,298–129,400 bp · −
rrn23 · NC_067670.1 · 129,499–132,309 bp · −
trnA-UGC · NC_067670.1 · 132,481–133,359 bp · −
trnI-GAU · NC_067670.1 · 133,424–134,442 bp · −
rrn16 · NC_067670.1 · 134,740–136,230 bp · −
trnV-GAC · NC_067670.1 · 136,457–136,528 bp · −
ycf15 · NC_067670.1 · 142,894–143,043 bp · −
ycf2 · NC_067670.1 · 143,233–150,063 bp · −
psbK · NC_067670.1 · 7,351–7,536 bp · +
psbI · NC_067670.1 · 7,924–8,034 bp · +
trnG-UCC · NC_067670.1 · 9,041–9,800 bp · +
trnR-UCU · NC_067670.1 · 9,991–10,062 bp · +
trnC-GCA · NC_067670.1 · 28,091–28,161 bp · +
petN · NC_067670.1 · 28,324–28,413 bp · +
trnT-GGU · NC_067670.1 · 30,582–30,653 bp · +
psbD · NC_067670.1 · 31,972–33,033 bp · +
psbC · NC_067670.1 · 32,981–34,402 bp · +
psbZ · NC_067670.1 · 35,073–35,261 bp · +
trnG-GCC · NC_067670.1 · 35,506–35,576 bp · +
trnS-GGA · NC_067670.1 · 44,475–44,561 bp · +
trnL-UAA · NC_067670.1 · 46,647–47,211 bp · +
trnF-GAA · NC_067670.1 · 47,505–47,577 bp · +
trnM-CAU · NC_067670.1 · 51,716–51,788 bp · +
rbcL · NC_067670.1 · 54,674–56,107 bp · +
accD · NC_067670.1 · 56,812–58,293 bp · +
psaI · NC_067670.1 · 58,995–59,105 bp · +
ycf4 · NC_067670.1 · 59,553–60,107 bp · +
cemA · NC_067670.1 · 60,698–61,387 bp · +
petA · NC_067670.1 · 61,602–62,564 bp · +
petL · NC_067670.1 · 65,280–65,375 bp · +
petG · NC_067670.1 · 65,550–65,663 bp · +
psaJ · NC_067670.1 · 66,383–66,517 bp · +
rpl33 · NC_067670.1 · 67,040–67,240 bp · +
rps18 · NC_067670.1 · 67,407–67,712 bp · +
rps12 · NC_067670.1 · 138,190–138,982 bp · +
psbB · NC_067670.1 · 71,687–73,213 bp · +
psbT · NC_067670.1 · 73,398–73,499 bp · +
psbH · NC_067670.1 · 73,802–74,020 bp · +
petB · NC_067670.1 · 74,146–75,512 bp · +
petD · NC_067670.1 · 75,701–76,893 bp · +
ycf2 · NC_067670.1 · 85,393–92,223 bp · +
ycf15 · NC_067670.1 · 92,413–92,562 bp · +
trnV-GAC · NC_067670.1 · 98,928–98,999 bp · +
rrn16 · NC_067670.1 · 99,226–100,716 bp · +
trnI-GAU · NC_067670.1 · 101,014–102,032 bp · +
trnA-UGC · NC_067670.1 · 102,097–102,975 bp · +
rrn23 · NC_067670.1 · 103,147–105,957 bp · +
rrn4.5 · NC_067670.1 · 106,056–106,158 bp · +
rrn5 · NC_067670.1 · 106,414–106,534 bp · +
trnR-ACG · NC_067670.1 · 106,778–106,851 bp · +
ycf1 · NC_067670.1 · 107,831–108,961 bp · +
rpl32 · NC_067670.1 · 111,555–111,725 bp · +
trnL-UAG · NC_067670.1 · 112,490–112,569 bp · +
ccsA · NC_067670.1 · 112,658–113,629 bp · +
trnN-GUU · NC_067670.1 · 127,967–128,038 bp · +
rps7 · NC_067670.1 · 139,036–139,503 bp · +
ndhB · NC_067670.1 · 139,774–141,981 bp · +
trnL-CAA · NC_067670.1 · 142,553–142,633 bp · +
trnI-CAU · NC_067670.1 · 150,158–150,231 bp · +
rpl23 · NC_067670.1 · 150,397–150,678 bp · +
rpl2 · NC_067670.1 · 150,697–152,175 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Isodon bifidocalyx
ANNOTATED PLASTOME
NC_067670.1
152,285 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
ATP synthase
Ribosomal protein
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38071 76142 114214 152285 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK OOB10_pgp086 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 11 85 75 Locate
psbA gene − 397 1455 1059 Locate
trnK-UUU gene − 1687 4267 2581 Locate
matK gene − 2007 3527 1521 Locate
OOB10_pgp086 gene − 4794 5939 1146 Locate
trnQ-UUG gene − 6886 6957 72 Locate
psbK gene + 7351 7536 186 Locate
psbI gene + 7924 8034 111 Locate
trnS-GCU gene − 8192 8279 88 Locate
trnG-UCC gene + 9041 9800 760 Locate
trnR-UCU gene + 9991 10062 72 Locate
atpA gene − 10166 11689 1524 Locate
atpF gene − 11798 13044 1247 Locate
atpH gene − 13336 13581 246 Locate
atpI gene − 14582 15325 744 Locate
rps2 gene − 15556 16266 711 Locate
rpoC2 gene − 16484 20665 4182 Locate
rpoC1 gene − 20830 23663 2834 Locate
rpoB gene − 23690 26902 3213 Locate
trnC-GCA gene + 28091 28161 71 Locate
petN gene + 28324 28413 90 Locate
psbM gene − 28940 29044 105 Locate
trnD-GUC gene − 29555 29628 74 Locate
trnY-GUA gene − 29739 29822 84 Locate
trnE-UUC gene − 29900 29972 73 Locate
trnT-GGU gene + 30582 30653 72 Locate
psbD gene + 31972 33033 1062 Locate
psbC gene + 32981 34402 1422 Locate
trnS-UGA gene − 34640 34732 93 Locate
psbZ gene + 35073 35261 189 Locate
trnG-GCC gene + 35506 35576 71 Locate
trnfM-CAU gene − 35764 35837 74 Locate
rps14 gene − 35983 36285 303 Locate
psaB gene − 36408 38612 2205 Locate
psaA gene − 38638 40890 2253 Locate
ycf3 gene − 41666 43613 1948 Locate
trnS-GGA gene + 44475 44561 87 Locate
rps4 gene − 44858 45463 606 Locate
trnT-UGU gene − 45888 45960 73 Locate
trnL-UAA gene + 46647 47211 565 Locate
trnF-GAA gene + 47505 47577 73 Locate
ndhJ gene − 48245 48721 477 Locate
ndhK gene − 48832 49509 678 Locate
ndhC gene − 49561 49923 363 Locate
trnV-UAC gene − 50880 51535 656 Locate
trnM-CAU gene + 51716 51788 73 Locate
atpE gene − 51989 52390 402 Locate
atpB gene − 52387 53883 1497 Locate
rbcL gene + 54674 56107 1434 Locate
accD gene + 56812 58293 1482 Locate
psaI gene + 58995 59105 111 Locate
ycf4 gene + 59553 60107 555 Locate
cemA gene + 60698 61387 690 Locate
petA gene + 61602 62564 963 Locate
psbJ gene − 63606 63728 123 Locate
psbL gene − 63863 63979 117 Locate
psbF gene − 64003 64122 120 Locate
psbE gene − 64137 64388 252 Locate
petL gene + 65280 65375 96 Locate
petG gene + 65550 65663 114 Locate
trnW-CCA gene − 65786 65859 74 Locate
trnP-UGG gene − 66028 66101 74 Locate
psaJ gene + 66383 66517 135 Locate
rpl33 gene + 67040 67240 201 Locate
rps18 gene + 67407 67712 306 Locate
rpl20 gene − 67947 68333 387 Locate
rps12 gene − 69066 69179 114 Locate
clpP gene − 69298 71214 1917 Locate
psbB gene + 71687 73213 1527 Locate
psbT gene + 73398 73499 102 Locate
psbN gene − 73565 73696 132 Locate
psbH gene + 73802 74020 219 Locate
petB gene + 74146 75512 1367 Locate
petD gene + 75701 76893 1193 Locate
rpoA gene − 77070 78077 1008 Locate
rps11 gene − 78149 78565 417 Locate
rpl36 gene − 78681 78794 114 Locate
infA gene − 78890 79123 234 Locate
rps8 gene − 79250 79654 405 Locate
rpl14 gene − 79837 80205 369 Locate
rpl16 gene − 80339 81606 1268 Locate
rps3 gene − 81750 82412 663 Locate
rpl22 gene − 82397 82870 474 Locate
rps19 gene − 82935 83213 279 Locate
rpl2 gene − 83281 84759 1479 Locate
rpl23 gene − 84778 85059 282 Locate
trnI-CAU gene − 85225 85298 74 Locate
ycf2 gene + 85393 92223 6831 Locate
ycf15 gene + 92413 92562 150 Locate
trnL-CAA gene − 92823 92903 81 Locate
ndhB gene − 93475 95682 2208 Locate
rps7 gene − 95953 96420 468 Locate
rps12 gene − 96474 97266 793 Locate
trnV-GAC gene + 98928 98999 72 Locate
rrn16 gene + 99226 100716 1491 Locate
trnI-GAU gene + 101014 102032 1019 Locate
trnA-UGC gene + 102097 102975 879 Locate
rrn23 gene + 103147 105957 2811 Locate
rrn4.5 gene + 106056 106158 103 Locate
rrn5 gene + 106414 106534 121 Locate
trnR-ACG gene + 106778 106851 74 Locate
trnN-GUU gene − 107418 107489 72 Locate
ycf1 gene + 107831 108961 1131 Locate
ndhF gene − 108855 111086 2232 Locate
rpl32 gene + 111555 111725 171 Locate
trnL-UAG gene + 112490 112569 80 Locate
ccsA gene + 112658 113629 972 Locate
ndhD gene − 113865 115391 1527 Locate
psaC gene − 115482 115727 246 Locate
ndhE gene − 115983 116288 306 Locate
ndhG gene − 116503 117033 531 Locate
ndhI gene − 117392 117898 507 Locate
ndhA gene − 117979 120103 2125 Locate
ndhH gene − 120105 121286 1182 Locate
rps15 gene − 121401 121673 273 Locate
ycf1 gene − 122103 127625 5523 Locate
trnN-GUU gene + 127967 128038 72 Locate
trnR-ACG gene − 128605 128678 74 Locate
rrn5 gene − 128922 129042 121 Locate
rrn4.5 gene − 129298 129400 103 Locate
rrn23 gene − 129499 132309 2811 Locate
trnA-UGC gene − 132481 133359 879 Locate
trnI-GAU gene − 133424 134442 1019 Locate
rrn16 gene − 134740 136230 1491 Locate
trnV-GAC gene − 136457 136528 72 Locate
rps12 gene + 138190 138982 793 Locate
rps7 gene + 139036 139503 468 Locate
ndhB gene + 139774 141981 2208 Locate
trnL-CAA gene + 142553 142633 81 Locate
ycf15 gene − 142894 143043 150 Locate
ycf2 gene − 143233 150063 6831 Locate
trnI-CAU gene + 150158 150231 74 Locate
rpl23 gene + 150397 150678 282 Locate
rpl2 gene + 150697 152175 1479 Locate
Status Available
Accession NC_067670.1
Length 152,285 bp
GC content 37.6%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 16 Atp Synthase 6 Ribosomal Protein 25 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources