Isodon brachythyrsus chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · NC_067650.1 · 11–85 bp · −
psbA · NC_067650.1 · 393–1,451 bp · −
trnK-UUU · NC_067650.1 · 1,683–4,263 bp · −
matK · NC_067650.1 · 2,003–3,523 bp · −
ON851_pgp086 · NC_067650.1 · 4,789–5,934 bp · −
trnQ-UUG · NC_067650.1 · 6,881–6,952 bp · −
trnS-GCU · NC_067650.1 · 8,185–8,272 bp · −
atpA · NC_067650.1 · 10,159–11,682 bp · −
atpF · NC_067650.1 · 11,792–13,037 bp · −
atpH · NC_067650.1 · 13,329–13,574 bp · −
atpI · NC_067650.1 · 14,575–15,318 bp · −
rps2 · NC_067650.1 · 15,544–16,254 bp · −
rpoC2 · NC_067650.1 · 16,472–20,653 bp · −
rpoC1 · NC_067650.1 · 20,818–23,651 bp · −
rpoB · NC_067650.1 · 23,678–26,890 bp · −
psbM · NC_067650.1 · 29,403–29,507 bp · −
trnD-GUC · NC_067650.1 · 30,026–30,099 bp · −
trnY-GUA · NC_067650.1 · 30,210–30,293 bp · −
trnE-UUC · NC_067650.1 · 30,371–30,443 bp · −
trnS-UGA · NC_067650.1 · 35,110–35,202 bp · −
trnfM-CAU · NC_067650.1 · 36,237–36,310 bp · −
rps14 · NC_067650.1 · 36,456–36,758 bp · −
psaB · NC_067650.1 · 36,881–39,085 bp · −
psaA · NC_067650.1 · 39,111–41,363 bp · −
ycf3 · NC_067650.1 · 42,131–44,078 bp · −
rps4 · NC_067650.1 · 45,325–45,930 bp · −
trnT-UGU · NC_067650.1 · 46,354–46,426 bp · −
ndhJ · NC_067650.1 · 48,712–49,188 bp · −
ndhK · NC_067650.1 · 49,299–49,976 bp · −
ndhC · NC_067650.1 · 50,028–50,390 bp · −
trnV-UAC · NC_067650.1 · 51,347–52,002 bp · −
atpE · NC_067650.1 · 52,456–52,857 bp · −
atpB · NC_067650.1 · 52,854–54,350 bp · −
psbJ · NC_067650.1 · 64,068–64,190 bp · −
psbL · NC_067650.1 · 64,325–64,441 bp · −
psbF · NC_067650.1 · 64,465–64,584 bp · −
psbE · NC_067650.1 · 64,599–64,850 bp · −
trnW-CCA · NC_067650.1 · 66,249–66,322 bp · −
trnP-UGG · NC_067650.1 · 66,491–66,564 bp · −
rpl20 · NC_067650.1 · 68,351–68,737 bp · −
rps12 · NC_067650.1 · 69,471–69,584 bp · −
rps12 · NC_067650.1 · 96,882–97,674 bp · −
clpP · NC_067650.1 · 69,703–71,623 bp · −
psbN · NC_067650.1 · 73,973–74,104 bp · −
rpoA · NC_067650.1 · 77,477–78,484 bp · −
rps11 · NC_067650.1 · 78,556–78,972 bp · −
rpl36 · NC_067650.1 · 79,088–79,201 bp · −
infA · NC_067650.1 · 79,297–79,530 bp · −
rps8 · NC_067650.1 · 79,657–80,061 bp · −
rpl14 · NC_067650.1 · 80,244–80,612 bp · −
rpl16 · NC_067650.1 · 80,746–82,013 bp · −
rps3 · NC_067650.1 · 82,157–82,819 bp · −
rpl22 · NC_067650.1 · 82,804–83,277 bp · −
rps19 · NC_067650.1 · 83,342–83,620 bp · −
rpl2 · NC_067650.1 · 83,689–85,167 bp · −
rpl23 · NC_067650.1 · 85,186–85,467 bp · −
trnI-CAU · NC_067650.1 · 85,633–85,706 bp · −
trnL-CAA · NC_067650.1 · 93,231–93,311 bp · −
ndhB · NC_067650.1 · 93,883–96,090 bp · −
rps7 · NC_067650.1 · 96,361–96,828 bp · −
trnN-GUU · NC_067650.1 · 107,826–107,897 bp · −
ndhF · NC_067650.1 · 109,263–111,494 bp · −
ndhD · NC_067650.1 · 114,278–115,807 bp · −
psaC · NC_067650.1 · 115,898–116,143 bp · −
ndhE · NC_067650.1 · 116,399–116,704 bp · −
ndhG · NC_067650.1 · 116,919–117,449 bp · −
ndhI · NC_067650.1 · 117,809–118,315 bp · −
ndhA · NC_067650.1 · 118,391–120,514 bp · −
ndhH · NC_067650.1 · 120,516–121,697 bp · −
rps15 · NC_067650.1 · 121,812–122,084 bp · −
ycf1 · NC_067650.1 · 122,514–128,036 bp · −
trnR-ACG · NC_067650.1 · 129,016–129,089 bp · −
rrn5 · NC_067650.1 · 129,333–129,453 bp · −
rrn4.5 · NC_067650.1 · 129,709–129,811 bp · −
rrn23 · NC_067650.1 · 129,910–132,720 bp · −
trnA-UGC · NC_067650.1 · 132,892–133,770 bp · −
trnI-GAU · NC_067650.1 · 133,835–134,853 bp · −
rrn16 · NC_067650.1 · 135,151–136,641 bp · −
trnV-GAC · NC_067650.1 · 136,868–136,939 bp · −
ycf15 · NC_067650.1 · 143,305–143,454 bp · −
ycf2 · NC_067650.1 · 143,644–150,474 bp · −
psbK · NC_067650.1 · 7,346–7,531 bp · +
psbI · NC_067650.1 · 7,919–8,029 bp · +
trnG-UCC · NC_067650.1 · 9,035–9,793 bp · +
trnR-UCU · NC_067650.1 · 9,984–10,055 bp · +
trnC-GCA · NC_067650.1 · 28,080–28,150 bp · +
petN · NC_067650.1 · 28,313–28,402 bp · +
trnT-GGU · NC_067650.1 · 31,053–31,124 bp · +
psbD · NC_067650.1 · 32,443–33,504 bp · +
psbC · NC_067650.1 · 33,452–34,873 bp · +
psbZ · NC_067650.1 · 35,543–35,731 bp · +
trnG-GCC · NC_067650.1 · 35,976–36,046 bp · +
trnS-GGA · NC_067650.1 · 44,942–45,028 bp · +
trnL-UAA · NC_067650.1 · 47,113–47,678 bp · +
trnF-GAA · NC_067650.1 · 47,972–48,044 bp · +
trnM-CAU · NC_067650.1 · 52,183–52,255 bp · +
rbcL · NC_067650.1 · 55,142–56,575 bp · +
accD · NC_067650.1 · 57,280–58,761 bp · +
psaI · NC_067650.1 · 59,462–59,572 bp · +
ycf4 · NC_067650.1 · 60,019–60,573 bp · +
cemA · NC_067650.1 · 61,164–61,853 bp · +
petA · NC_067650.1 · 62,068–63,030 bp · +
petL · NC_067650.1 · 65,743–65,838 bp · +
petG · NC_067650.1 · 66,013–66,126 bp · +
psaJ · NC_067650.1 · 66,846–66,980 bp · +
rpl33 · NC_067650.1 · 67,444–67,644 bp · +
rps18 · NC_067650.1 · 67,811–68,116 bp · +
rps12 · NC_067650.1 · 138,601–139,393 bp · +
psbB · NC_067650.1 · 72,096–73,622 bp · +
psbT · NC_067650.1 · 73,806–73,907 bp · +
psbH · NC_067650.1 · 74,210–74,428 bp · +
petB · NC_067650.1 · 74,554–75,919 bp · +
petD · NC_067650.1 · 76,108–77,300 bp · +
ycf2 · NC_067650.1 · 85,801–92,631 bp · +
ycf15 · NC_067650.1 · 92,821–92,970 bp · +
trnV-GAC · NC_067650.1 · 99,336–99,407 bp · +
rrn16 · NC_067650.1 · 99,634–101,124 bp · +
trnI-GAU · NC_067650.1 · 101,422–102,440 bp · +
trnA-UGC · NC_067650.1 · 102,505–103,383 bp · +
rrn23 · NC_067650.1 · 103,555–106,365 bp · +
rrn4.5 · NC_067650.1 · 106,464–106,566 bp · +
rrn5 · NC_067650.1 · 106,822–106,942 bp · +
trnR-ACG · NC_067650.1 · 107,186–107,259 bp · +
ycf1 · NC_067650.1 · 108,239–109,369 bp · +
rpl32 · NC_067650.1 · 111,963–112,133 bp · +
trnL-UAG · NC_067650.1 · 112,898–112,977 bp · +
ccsA · NC_067650.1 · 113,066–114,037 bp · +
trnN-GUU · NC_067650.1 · 128,378–128,449 bp · +
rps7 · NC_067650.1 · 139,447–139,914 bp · +
ndhB · NC_067650.1 · 140,185–142,392 bp · +
trnL-CAA · NC_067650.1 · 142,964–143,044 bp · +
trnI-CAU · NC_067650.1 · 150,569–150,642 bp · +
rpl23 · NC_067650.1 · 150,808–151,089 bp · +
rpl2 · NC_067650.1 · 151,108–152,586 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Isodon brachythyrsus
ANNOTATED PLASTOME
NC_067650.1
152,697 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
ATP synthase
Ribosomal protein
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38174 76348 114523 152697 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK ON851_pgp086 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 11 85 75 Locate
psbA gene − 393 1451 1059 Locate
trnK-UUU gene − 1683 4263 2581 Locate
matK gene − 2003 3523 1521 Locate
ON851_pgp086 gene − 4789 5934 1146 Locate
trnQ-UUG gene − 6881 6952 72 Locate
psbK gene + 7346 7531 186 Locate
psbI gene + 7919 8029 111 Locate
trnS-GCU gene − 8185 8272 88 Locate
trnG-UCC gene + 9035 9793 759 Locate
trnR-UCU gene + 9984 10055 72 Locate
atpA gene − 10159 11682 1524 Locate
atpF gene − 11792 13037 1246 Locate
atpH gene − 13329 13574 246 Locate
atpI gene − 14575 15318 744 Locate
rps2 gene − 15544 16254 711 Locate
rpoC2 gene − 16472 20653 4182 Locate
rpoC1 gene − 20818 23651 2834 Locate
rpoB gene − 23678 26890 3213 Locate
trnC-GCA gene + 28080 28150 71 Locate
petN gene + 28313 28402 90 Locate
psbM gene − 29403 29507 105 Locate
trnD-GUC gene − 30026 30099 74 Locate
trnY-GUA gene − 30210 30293 84 Locate
trnE-UUC gene − 30371 30443 73 Locate
trnT-GGU gene + 31053 31124 72 Locate
psbD gene + 32443 33504 1062 Locate
psbC gene + 33452 34873 1422 Locate
trnS-UGA gene − 35110 35202 93 Locate
psbZ gene + 35543 35731 189 Locate
trnG-GCC gene + 35976 36046 71 Locate
trnfM-CAU gene − 36237 36310 74 Locate
rps14 gene − 36456 36758 303 Locate
psaB gene − 36881 39085 2205 Locate
psaA gene − 39111 41363 2253 Locate
ycf3 gene − 42131 44078 1948 Locate
trnS-GGA gene + 44942 45028 87 Locate
rps4 gene − 45325 45930 606 Locate
trnT-UGU gene − 46354 46426 73 Locate
trnL-UAA gene + 47113 47678 566 Locate
trnF-GAA gene + 47972 48044 73 Locate
ndhJ gene − 48712 49188 477 Locate
ndhK gene − 49299 49976 678 Locate
ndhC gene − 50028 50390 363 Locate
trnV-UAC gene − 51347 52002 656 Locate
trnM-CAU gene + 52183 52255 73 Locate
atpE gene − 52456 52857 402 Locate
atpB gene − 52854 54350 1497 Locate
rbcL gene + 55142 56575 1434 Locate
accD gene + 57280 58761 1482 Locate
psaI gene + 59462 59572 111 Locate
ycf4 gene + 60019 60573 555 Locate
cemA gene + 61164 61853 690 Locate
petA gene + 62068 63030 963 Locate
psbJ gene − 64068 64190 123 Locate
psbL gene − 64325 64441 117 Locate
psbF gene − 64465 64584 120 Locate
psbE gene − 64599 64850 252 Locate
petL gene + 65743 65838 96 Locate
petG gene + 66013 66126 114 Locate
trnW-CCA gene − 66249 66322 74 Locate
trnP-UGG gene − 66491 66564 74 Locate
psaJ gene + 66846 66980 135 Locate
rpl33 gene + 67444 67644 201 Locate
rps18 gene + 67811 68116 306 Locate
rpl20 gene − 68351 68737 387 Locate
rps12 gene − 69471 69584 114 Locate
clpP gene − 69703 71623 1921 Locate
psbB gene + 72096 73622 1527 Locate
psbT gene + 73806 73907 102 Locate
psbN gene − 73973 74104 132 Locate
psbH gene + 74210 74428 219 Locate
petB gene + 74554 75919 1366 Locate
petD gene + 76108 77300 1193 Locate
rpoA gene − 77477 78484 1008 Locate
rps11 gene − 78556 78972 417 Locate
rpl36 gene − 79088 79201 114 Locate
infA gene − 79297 79530 234 Locate
rps8 gene − 79657 80061 405 Locate
rpl14 gene − 80244 80612 369 Locate
rpl16 gene − 80746 82013 1268 Locate
rps3 gene − 82157 82819 663 Locate
rpl22 gene − 82804 83277 474 Locate
rps19 gene − 83342 83620 279 Locate
rpl2 gene − 83689 85167 1479 Locate
rpl23 gene − 85186 85467 282 Locate
trnI-CAU gene − 85633 85706 74 Locate
ycf2 gene + 85801 92631 6831 Locate
ycf15 gene + 92821 92970 150 Locate
trnL-CAA gene − 93231 93311 81 Locate
ndhB gene − 93883 96090 2208 Locate
rps7 gene − 96361 96828 468 Locate
rps12 gene − 96882 97674 793 Locate
trnV-GAC gene + 99336 99407 72 Locate
rrn16 gene + 99634 101124 1491 Locate
trnI-GAU gene + 101422 102440 1019 Locate
trnA-UGC gene + 102505 103383 879 Locate
rrn23 gene + 103555 106365 2811 Locate
rrn4.5 gene + 106464 106566 103 Locate
rrn5 gene + 106822 106942 121 Locate
trnR-ACG gene + 107186 107259 74 Locate
trnN-GUU gene − 107826 107897 72 Locate
ycf1 gene + 108239 109369 1131 Locate
ndhF gene − 109263 111494 2232 Locate
rpl32 gene + 111963 112133 171 Locate
trnL-UAG gene + 112898 112977 80 Locate
ccsA gene + 113066 114037 972 Locate
ndhD gene − 114278 115807 1530 Locate
psaC gene − 115898 116143 246 Locate
ndhE gene − 116399 116704 306 Locate
ndhG gene − 116919 117449 531 Locate
ndhI gene − 117809 118315 507 Locate
ndhA gene − 118391 120514 2124 Locate
ndhH gene − 120516 121697 1182 Locate
rps15 gene − 121812 122084 273 Locate
ycf1 gene − 122514 128036 5523 Locate
trnN-GUU gene + 128378 128449 72 Locate
trnR-ACG gene − 129016 129089 74 Locate
rrn5 gene − 129333 129453 121 Locate
rrn4.5 gene − 129709 129811 103 Locate
rrn23 gene − 129910 132720 2811 Locate
trnA-UGC gene − 132892 133770 879 Locate
trnI-GAU gene − 133835 134853 1019 Locate
rrn16 gene − 135151 136641 1491 Locate
trnV-GAC gene − 136868 136939 72 Locate
rps12 gene + 138601 139393 793 Locate
rps7 gene + 139447 139914 468 Locate
ndhB gene + 140185 142392 2208 Locate
trnL-CAA gene + 142964 143044 81 Locate
ycf15 gene − 143305 143454 150 Locate
ycf2 gene − 143644 150474 6831 Locate
trnI-CAU gene + 150569 150642 74 Locate
rpl23 gene + 150808 151089 282 Locate
rpl2 gene + 151108 152586 1479 Locate
Status Available
Accession NC_067650.1
Length 152,697 bp
GC content 37.6%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 16 Atp Synthase 6 Ribosomal Protein 25 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources