Isodon calcicola chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · NC_067652.1 · 11–85 bp · −
psbA · NC_067652.1 · 393–1,451 bp · −
trnK-UUU · NC_067652.1 · 1,683–4,263 bp · −
matK · NC_067652.1 · 2,003–3,523 bp · −
OOC38_pgp086 · NC_067652.1 · 4,790–5,929 bp · −
trnQ-UUG · NC_067652.1 · 6,868–6,939 bp · −
trnS-GCU · NC_067652.1 · 8,170–8,257 bp · −
atpA · NC_067652.1 · 10,145–11,668 bp · −
atpF · NC_067652.1 · 11,770–13,014 bp · −
atpH · NC_067652.1 · 13,306–13,551 bp · −
atpI · NC_067652.1 · 14,552–15,295 bp · −
rps2 · NC_067652.1 · 15,521–16,231 bp · −
rpoC2 · NC_067652.1 · 16,446–20,627 bp · −
rpoC1 · NC_067652.1 · 20,792–23,625 bp · −
rpoB · NC_067652.1 · 23,652–26,864 bp · −
psbM · NC_067652.1 · 29,351–29,455 bp · −
trnD-GUC · NC_067652.1 · 29,939–30,012 bp · −
trnY-GUA · NC_067652.1 · 30,123–30,206 bp · −
trnE-UUC · NC_067652.1 · 30,284–30,356 bp · −
trnS-UGA · NC_067652.1 · 35,021–35,113 bp · −
trnfM-CAU · NC_067652.1 · 36,146–36,219 bp · −
rps14 · NC_067652.1 · 36,365–36,667 bp · −
psaB · NC_067652.1 · 36,790–38,994 bp · −
psaA · NC_067652.1 · 39,020–41,272 bp · −
ycf3 · NC_067652.1 · 42,046–43,993 bp · −
rps4 · NC_067652.1 · 45,240–45,845 bp · −
trnT-UGU · NC_067652.1 · 46,270–46,342 bp · −
ndhJ · NC_067652.1 · 48,619–49,095 bp · −
ndhK · NC_067652.1 · 49,206–49,883 bp · −
ndhC · NC_067652.1 · 49,935–50,297 bp · −
trnV-UAC · NC_067652.1 · 51,254–51,909 bp · −
atpE · NC_067652.1 · 52,363–52,764 bp · −
atpB · NC_067652.1 · 52,761–54,257 bp · −
psbJ · NC_067652.1 · 63,976–64,098 bp · −
psbL · NC_067652.1 · 64,233–64,349 bp · −
psbF · NC_067652.1 · 64,373–64,492 bp · −
psbE · NC_067652.1 · 64,507–64,758 bp · −
trnW-CCA · NC_067652.1 · 66,157–66,230 bp · −
trnP-UGG · NC_067652.1 · 66,399–66,472 bp · −
rpl20 · NC_067652.1 · 68,258–68,644 bp · −
rps12 · NC_067652.1 · 69,380–69,493 bp · −
rps12 · NC_067652.1 · 96,790–97,582 bp · −
clpP · NC_067652.1 · 69,612–71,529 bp · −
psbN · NC_067652.1 · 73,879–74,010 bp · −
rpoA · NC_067652.1 · 77,386–78,393 bp · −
rps11 · NC_067652.1 · 78,465–78,881 bp · −
rpl36 · NC_067652.1 · 78,997–79,110 bp · −
infA · NC_067652.1 · 79,206–79,439 bp · −
rps8 · NC_067652.1 · 79,566–79,970 bp · −
rpl14 · NC_067652.1 · 80,153–80,521 bp · −
rpl16 · NC_067652.1 · 80,655–81,922 bp · −
rps3 · NC_067652.1 · 82,066–82,728 bp · −
rpl22 · NC_067652.1 · 82,713–83,186 bp · −
rps19 · NC_067652.1 · 83,251–83,529 bp · −
rpl2 · NC_067652.1 · 83,597–85,075 bp · −
rpl23 · NC_067652.1 · 85,094–85,375 bp · −
trnI-CAU · NC_067652.1 · 85,541–85,614 bp · −
trnL-CAA · NC_067652.1 · 93,139–93,219 bp · −
ndhB · NC_067652.1 · 93,791–95,998 bp · −
rps7 · NC_067652.1 · 96,269–96,736 bp · −
trnN-GUU · NC_067652.1 · 107,729–107,800 bp · −
ndhF · NC_067652.1 · 109,166–111,397 bp · −
ndhD · NC_067652.1 · 114,171–115,700 bp · −
psaC · NC_067652.1 · 115,791–116,036 bp · −
ndhE · NC_067652.1 · 116,292–116,597 bp · −
ndhG · NC_067652.1 · 116,812–117,342 bp · −
ndhI · NC_067652.1 · 117,701–118,207 bp · −
ndhA · NC_067652.1 · 118,288–120,411 bp · −
ndhH · NC_067652.1 · 120,413–121,594 bp · −
rps15 · NC_067652.1 · 121,709–121,981 bp · −
ycf1 · NC_067652.1 · 122,411–127,939 bp · −
trnR-ACG · NC_067652.1 · 128,919–128,992 bp · −
rrn5 · NC_067652.1 · 129,236–129,356 bp · −
rrn4.5 · NC_067652.1 · 129,612–129,714 bp · −
rrn23 · NC_067652.1 · 129,813–132,623 bp · −
trnA-UGC · NC_067652.1 · 132,795–133,673 bp · −
trnI-GAU · NC_067652.1 · 133,738–134,756 bp · −
rrn16 · NC_067652.1 · 135,054–136,544 bp · −
trnV-GAC · NC_067652.1 · 136,771–136,842 bp · −
ycf15 · NC_067652.1 · 143,203–143,352 bp · −
ycf2 · NC_067652.1 · 143,542–150,372 bp · −
psbK · NC_067652.1 · 7,333–7,518 bp · +
psbI · NC_067652.1 · 7,905–8,015 bp · +
trnG-UCC · NC_067652.1 · 9,019–9,779 bp · +
trnR-UCU · NC_067652.1 · 9,970–10,041 bp · +
trnC-GCA · NC_067652.1 · 28,054–28,124 bp · +
petN · NC_067652.1 · 28,287–28,376 bp · +
trnT-GGU · NC_067652.1 · 30,966–31,037 bp · +
psbD · NC_067652.1 · 32,355–33,416 bp · +
psbC · NC_067652.1 · 33,364–34,785 bp · +
psbZ · NC_067652.1 · 35,454–35,642 bp · +
trnG-GCC · NC_067652.1 · 35,887–35,957 bp · +
trnS-GGA · NC_067652.1 · 44,857–44,943 bp · +
trnL-UAA · NC_067652.1 · 47,042–47,585 bp · +
trnF-GAA · NC_067652.1 · 47,879–47,951 bp · +
trnM-CAU · NC_067652.1 · 52,090–52,162 bp · +
rbcL · NC_067652.1 · 55,049–56,482 bp · +
accD · NC_067652.1 · 57,187–58,668 bp · +
psaI · NC_067652.1 · 59,369–59,479 bp · +
ycf4 · NC_067652.1 · 59,926–60,480 bp · +
cemA · NC_067652.1 · 61,071–61,760 bp · +
petA · NC_067652.1 · 61,975–62,937 bp · +
petL · NC_067652.1 · 65,651–65,746 bp · +
petG · NC_067652.1 · 65,921–66,034 bp · +
psaJ · NC_067652.1 · 66,754–66,888 bp · +
rpl33 · NC_067652.1 · 67,351–67,551 bp · +
rps18 · NC_067652.1 · 67,718–68,023 bp · +
rps12 · NC_067652.1 · 138,499–139,291 bp · +
psbB · NC_067652.1 · 72,002–73,528 bp · +
psbT · NC_067652.1 · 73,712–73,813 bp · +
psbH · NC_067652.1 · 74,116–74,334 bp · +
petB · NC_067652.1 · 74,460–75,828 bp · +
petD · NC_067652.1 · 76,017–77,209 bp · +
ycf2 · NC_067652.1 · 85,709–92,539 bp · +
ycf15 · NC_067652.1 · 92,729–92,878 bp · +
trnV-GAC · NC_067652.1 · 99,239–99,310 bp · +
rrn16 · NC_067652.1 · 99,537–101,027 bp · +
trnI-GAU · NC_067652.1 · 101,325–102,343 bp · +
trnA-UGC · NC_067652.1 · 102,408–103,286 bp · +
rrn23 · NC_067652.1 · 103,458–106,268 bp · +
rrn4.5 · NC_067652.1 · 106,367–106,469 bp · +
rrn5 · NC_067652.1 · 106,725–106,845 bp · +
trnR-ACG · NC_067652.1 · 107,089–107,162 bp · +
ycf1 · NC_067652.1 · 108,142–109,272 bp · +
rpl32 · NC_067652.1 · 111,866–112,036 bp · +
trnL-UAG · NC_067652.1 · 112,800–112,879 bp · +
ccsA · NC_067652.1 · 112,968–113,939 bp · +
trnN-GUU · NC_067652.1 · 128,281–128,352 bp · +
rps7 · NC_067652.1 · 139,345–139,812 bp · +
ndhB · NC_067652.1 · 140,083–142,290 bp · +
trnL-CAA · NC_067652.1 · 142,862–142,942 bp · +
trnI-CAU · NC_067652.1 · 150,467–150,540 bp · +
rpl23 · NC_067652.1 · 150,706–150,987 bp · +
rpl2 · NC_067652.1 · 151,006–152,484 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Isodon calcicola
ANNOTATED PLASTOME
NC_067652.1
152,594 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
ATP synthase
Ribosomal protein
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38148 76297 114446 152594 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK OOC38_pgp086 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 11 85 75 Locate
psbA gene − 393 1451 1059 Locate
trnK-UUU gene − 1683 4263 2581 Locate
matK gene − 2003 3523 1521 Locate
OOC38_pgp086 gene − 4790 5929 1140 Locate
trnQ-UUG gene − 6868 6939 72 Locate
psbK gene + 7333 7518 186 Locate
psbI gene + 7905 8015 111 Locate
trnS-GCU gene − 8170 8257 88 Locate
trnG-UCC gene + 9019 9779 761 Locate
trnR-UCU gene + 9970 10041 72 Locate
atpA gene − 10145 11668 1524 Locate
atpF gene − 11770 13014 1245 Locate
atpH gene − 13306 13551 246 Locate
atpI gene − 14552 15295 744 Locate
rps2 gene − 15521 16231 711 Locate
rpoC2 gene − 16446 20627 4182 Locate
rpoC1 gene − 20792 23625 2834 Locate
rpoB gene − 23652 26864 3213 Locate
trnC-GCA gene + 28054 28124 71 Locate
petN gene + 28287 28376 90 Locate
psbM gene − 29351 29455 105 Locate
trnD-GUC gene − 29939 30012 74 Locate
trnY-GUA gene − 30123 30206 84 Locate
trnE-UUC gene − 30284 30356 73 Locate
trnT-GGU gene + 30966 31037 72 Locate
psbD gene + 32355 33416 1062 Locate
psbC gene + 33364 34785 1422 Locate
trnS-UGA gene − 35021 35113 93 Locate
psbZ gene + 35454 35642 189 Locate
trnG-GCC gene + 35887 35957 71 Locate
trnfM-CAU gene − 36146 36219 74 Locate
rps14 gene − 36365 36667 303 Locate
psaB gene − 36790 38994 2205 Locate
psaA gene − 39020 41272 2253 Locate
ycf3 gene − 42046 43993 1948 Locate
trnS-GGA gene + 44857 44943 87 Locate
rps4 gene − 45240 45845 606 Locate
trnT-UGU gene − 46270 46342 73 Locate
trnL-UAA gene + 47042 47585 544 Locate
trnF-GAA gene + 47879 47951 73 Locate
ndhJ gene − 48619 49095 477 Locate
ndhK gene − 49206 49883 678 Locate
ndhC gene − 49935 50297 363 Locate
trnV-UAC gene − 51254 51909 656 Locate
trnM-CAU gene + 52090 52162 73 Locate
atpE gene − 52363 52764 402 Locate
atpB gene − 52761 54257 1497 Locate
rbcL gene + 55049 56482 1434 Locate
accD gene + 57187 58668 1482 Locate
psaI gene + 59369 59479 111 Locate
ycf4 gene + 59926 60480 555 Locate
cemA gene + 61071 61760 690 Locate
petA gene + 61975 62937 963 Locate
psbJ gene − 63976 64098 123 Locate
psbL gene − 64233 64349 117 Locate
psbF gene − 64373 64492 120 Locate
psbE gene − 64507 64758 252 Locate
petL gene + 65651 65746 96 Locate
petG gene + 65921 66034 114 Locate
trnW-CCA gene − 66157 66230 74 Locate
trnP-UGG gene − 66399 66472 74 Locate
psaJ gene + 66754 66888 135 Locate
rpl33 gene + 67351 67551 201 Locate
rps18 gene + 67718 68023 306 Locate
rpl20 gene − 68258 68644 387 Locate
rps12 gene − 69380 69493 114 Locate
clpP gene − 69612 71529 1918 Locate
psbB gene + 72002 73528 1527 Locate
psbT gene + 73712 73813 102 Locate
psbN gene − 73879 74010 132 Locate
psbH gene + 74116 74334 219 Locate
petB gene + 74460 75828 1369 Locate
petD gene + 76017 77209 1193 Locate
rpoA gene − 77386 78393 1008 Locate
rps11 gene − 78465 78881 417 Locate
rpl36 gene − 78997 79110 114 Locate
infA gene − 79206 79439 234 Locate
rps8 gene − 79566 79970 405 Locate
rpl14 gene − 80153 80521 369 Locate
rpl16 gene − 80655 81922 1268 Locate
rps3 gene − 82066 82728 663 Locate
rpl22 gene − 82713 83186 474 Locate
rps19 gene − 83251 83529 279 Locate
rpl2 gene − 83597 85075 1479 Locate
rpl23 gene − 85094 85375 282 Locate
trnI-CAU gene − 85541 85614 74 Locate
ycf2 gene + 85709 92539 6831 Locate
ycf15 gene + 92729 92878 150 Locate
trnL-CAA gene − 93139 93219 81 Locate
ndhB gene − 93791 95998 2208 Locate
rps7 gene − 96269 96736 468 Locate
rps12 gene − 96790 97582 793 Locate
trnV-GAC gene + 99239 99310 72 Locate
rrn16 gene + 99537 101027 1491 Locate
trnI-GAU gene + 101325 102343 1019 Locate
trnA-UGC gene + 102408 103286 879 Locate
rrn23 gene + 103458 106268 2811 Locate
rrn4.5 gene + 106367 106469 103 Locate
rrn5 gene + 106725 106845 121 Locate
trnR-ACG gene + 107089 107162 74 Locate
trnN-GUU gene − 107729 107800 72 Locate
ycf1 gene + 108142 109272 1131 Locate
ndhF gene − 109166 111397 2232 Locate
rpl32 gene + 111866 112036 171 Locate
trnL-UAG gene + 112800 112879 80 Locate
ccsA gene + 112968 113939 972 Locate
ndhD gene − 114171 115700 1530 Locate
psaC gene − 115791 116036 246 Locate
ndhE gene − 116292 116597 306 Locate
ndhG gene − 116812 117342 531 Locate
ndhI gene − 117701 118207 507 Locate
ndhA gene − 118288 120411 2124 Locate
ndhH gene − 120413 121594 1182 Locate
rps15 gene − 121709 121981 273 Locate
ycf1 gene − 122411 127939 5529 Locate
trnN-GUU gene + 128281 128352 72 Locate
trnR-ACG gene − 128919 128992 74 Locate
rrn5 gene − 129236 129356 121 Locate
rrn4.5 gene − 129612 129714 103 Locate
rrn23 gene − 129813 132623 2811 Locate
trnA-UGC gene − 132795 133673 879 Locate
trnI-GAU gene − 133738 134756 1019 Locate
rrn16 gene − 135054 136544 1491 Locate
trnV-GAC gene − 136771 136842 72 Locate
rps12 gene + 138499 139291 793 Locate
rps7 gene + 139345 139812 468 Locate
ndhB gene + 140083 142290 2208 Locate
trnL-CAA gene + 142862 142942 81 Locate
ycf15 gene − 143203 143352 150 Locate
ycf2 gene − 143542 150372 6831 Locate
trnI-CAU gene + 150467 150540 74 Locate
rpl23 gene + 150706 150987 282 Locate
rpl2 gene + 151006 152484 1479 Locate
Status Available
Accession NC_067652.1
Length 152,594 bp
GC content 37.6%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 16 Atp Synthase 6 Ribosomal Protein 25 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources