Isodon chionanthus chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · NC_067706.1 · 11–85 bp · −
psbA · NC_067706.1 · 389–1,447 bp · −
trnK-UUU · NC_067706.1 · 1,679–4,260 bp · −
matK · NC_067706.1 · 2,000–3,520 bp · −
OOB09_pgp086 · NC_067706.1 · 4,786–5,931 bp · −
trnQ-UUG · NC_067706.1 · 6,871–6,942 bp · −
trnS-GCU · NC_067706.1 · 8,152–8,239 bp · −
atpA · NC_067706.1 · 10,127–11,650 bp · −
atpF · NC_067706.1 · 11,760–13,005 bp · −
atpH · NC_067706.1 · 13,297–13,542 bp · −
atpI · NC_067706.1 · 14,543–15,286 bp · −
rps2 · NC_067706.1 · 15,512–16,222 bp · −
rpoC2 · NC_067706.1 · 16,439–20,620 bp · −
rpoC1 · NC_067706.1 · 20,785–23,618 bp · −
rpoB · NC_067706.1 · 23,645–26,857 bp · −
psbM · NC_067706.1 · 29,360–29,464 bp · −
trnD-GUC · NC_067706.1 · 29,983–30,056 bp · −
trnY-GUA · NC_067706.1 · 30,167–30,250 bp · −
trnE-UUC · NC_067706.1 · 30,328–30,400 bp · −
trnS-UGA · NC_067706.1 · 35,064–35,156 bp · −
trnfM-CAU · NC_067706.1 · 36,188–36,261 bp · −
rps14 · NC_067706.1 · 36,407–36,709 bp · −
psaB · NC_067706.1 · 36,832–39,036 bp · −
psaA · NC_067706.1 · 39,062–41,314 bp · −
ycf3 · NC_067706.1 · 42,087–44,034 bp · −
rps4 · NC_067706.1 · 45,179–45,784 bp · −
trnT-UGU · NC_067706.1 · 46,179–46,251 bp · −
ndhJ · NC_067706.1 · 48,534–49,010 bp · −
ndhK · NC_067706.1 · 49,121–49,798 bp · −
ndhC · NC_067706.1 · 49,850–50,212 bp · −
trnV-UAC · NC_067706.1 · 51,164–51,819 bp · −
atpE · NC_067706.1 · 52,273–52,674 bp · −
atpB · NC_067706.1 · 52,671–54,167 bp · −
psbJ · NC_067706.1 · 63,875–63,997 bp · −
psbL · NC_067706.1 · 64,132–64,248 bp · −
psbF · NC_067706.1 · 64,272–64,391 bp · −
psbE · NC_067706.1 · 64,406–64,657 bp · −
trnW-CCA · NC_067706.1 · 66,056–66,129 bp · −
trnP-UGG · NC_067706.1 · 66,298–66,371 bp · −
rpl20 · NC_067706.1 · 68,157–68,543 bp · −
rps12 · NC_067706.1 · 69,279–69,392 bp · −
rps12 · NC_067706.1 · 96,681–97,473 bp · −
clpP · NC_067706.1 · 69,511–71,428 bp · −
psbN · NC_067706.1 · 73,778–73,909 bp · −
rpoA · NC_067706.1 · 77,277–78,284 bp · −
rps11 · NC_067706.1 · 78,356–78,772 bp · −
rpl36 · NC_067706.1 · 78,888–79,001 bp · −
infA · NC_067706.1 · 79,097–79,330 bp · −
rps8 · NC_067706.1 · 79,457–79,861 bp · −
rpl14 · NC_067706.1 · 80,044–80,412 bp · −
rpl16 · NC_067706.1 · 80,546–81,813 bp · −
rps3 · NC_067706.1 · 81,957–82,619 bp · −
rpl22 · NC_067706.1 · 82,604–83,077 bp · −
rps19 · NC_067706.1 · 83,142–83,420 bp · −
rpl2 · NC_067706.1 · 83,488–84,966 bp · −
rpl23 · NC_067706.1 · 84,985–85,266 bp · −
trnI-CAU · NC_067706.1 · 85,432–85,505 bp · −
trnL-CAA · NC_067706.1 · 93,030–93,110 bp · −
ndhB · NC_067706.1 · 93,682–95,889 bp · −
rps7 · NC_067706.1 · 96,160–96,627 bp · −
trnN-GUU · NC_067706.1 · 107,625–107,696 bp · −
ndhF · NC_067706.1 · 109,062–111,293 bp · −
ndhD · NC_067706.1 · 114,075–115,604 bp · −
psaC · NC_067706.1 · 115,695–115,940 bp · −
ndhE · NC_067706.1 · 116,196–116,501 bp · −
ndhG · NC_067706.1 · 116,716–117,246 bp · −
ndhI · NC_067706.1 · 117,606–118,112 bp · −
ndhA · NC_067706.1 · 118,193–120,316 bp · −
ndhH · NC_067706.1 · 120,318–121,499 bp · −
rps15 · NC_067706.1 · 121,614–121,886 bp · −
ycf1 · NC_067706.1 · 122,316–127,838 bp · −
trnR-ACG · NC_067706.1 · 128,818–128,891 bp · −
rrn5 · NC_067706.1 · 129,135–129,255 bp · −
rrn4.5 · NC_067706.1 · 129,511–129,613 bp · −
rrn23 · NC_067706.1 · 129,712–132,522 bp · −
trnA-UGC · NC_067706.1 · 132,694–133,572 bp · −
trnI-GAU · NC_067706.1 · 133,637–134,655 bp · −
rrn16 · NC_067706.1 · 134,953–136,443 bp · −
trnV-GAC · NC_067706.1 · 136,670–136,741 bp · −
ycf15 · NC_067706.1 · 143,107–143,256 bp · −
ycf2 · NC_067706.1 · 143,446–150,276 bp · −
psbK · NC_067706.1 · 7,312–7,497 bp · +
psbI · NC_067706.1 · 7,885–7,995 bp · +
trnG-UCC · NC_067706.1 · 9,002–9,761 bp · +
trnR-UCU · NC_067706.1 · 9,952–10,023 bp · +
trnC-GCA · NC_067706.1 · 28,046–28,116 bp · +
petN · NC_067706.1 · 28,279–28,368 bp · +
trnT-GGU · NC_067706.1 · 31,010–31,081 bp · +
psbD · NC_067706.1 · 32,399–33,460 bp · +
psbC · NC_067706.1 · 33,408–34,829 bp · +
psbZ · NC_067706.1 · 35,497–35,685 bp · +
trnG-GCC · NC_067706.1 · 35,930–36,000 bp · +
trnS-GGA · NC_067706.1 · 44,792–44,878 bp · +
trnL-UAA · NC_067706.1 · 46,937–47,500 bp · +
trnF-GAA · NC_067706.1 · 47,794–47,866 bp · +
trnM-CAU · NC_067706.1 · 52,000–52,072 bp · +
rbcL · NC_067706.1 · 54,958–56,391 bp · +
accD · NC_067706.1 · 57,090–58,571 bp · +
psaI · NC_067706.1 · 59,271–59,381 bp · +
ycf4 · NC_067706.1 · 59,832–60,386 bp · +
cemA · NC_067706.1 · 60,970–61,659 bp · +
petA · NC_067706.1 · 61,874–62,836 bp · +
petL · NC_067706.1 · 65,550–65,645 bp · +
petG · NC_067706.1 · 65,820–65,933 bp · +
psaJ · NC_067706.1 · 66,653–66,787 bp · +
rpl33 · NC_067706.1 · 67,249–67,449 bp · +
rps18 · NC_067706.1 · 67,616–67,921 bp · +
rps12 · NC_067706.1 · 138,403–139,195 bp · +
psbB · NC_067706.1 · 71,901–73,427 bp · +
psbT · NC_067706.1 · 73,611–73,712 bp · +
psbH · NC_067706.1 · 74,015–74,233 bp · +
petB · NC_067706.1 · 74,359–75,719 bp · +
petD · NC_067706.1 · 75,908–77,100 bp · +
ycf2 · NC_067706.1 · 85,600–92,430 bp · +
ycf15 · NC_067706.1 · 92,620–92,769 bp · +
trnV-GAC · NC_067706.1 · 99,135–99,206 bp · +
rrn16 · NC_067706.1 · 99,433–100,923 bp · +
trnI-GAU · NC_067706.1 · 101,221–102,239 bp · +
trnA-UGC · NC_067706.1 · 102,304–103,182 bp · +
rrn23 · NC_067706.1 · 103,354–106,164 bp · +
rrn4.5 · NC_067706.1 · 106,263–106,365 bp · +
rrn5 · NC_067706.1 · 106,621–106,741 bp · +
trnR-ACG · NC_067706.1 · 106,985–107,058 bp · +
ycf1 · NC_067706.1 · 108,038–109,168 bp · +
rpl32 · NC_067706.1 · 111,769–111,939 bp · +
trnL-UAG · NC_067706.1 · 112,704–112,783 bp · +
ccsA · NC_067706.1 · 112,872–113,843 bp · +
trnN-GUU · NC_067706.1 · 128,180–128,251 bp · +
rps7 · NC_067706.1 · 139,249–139,716 bp · +
ndhB · NC_067706.1 · 139,987–142,194 bp · +
trnL-CAA · NC_067706.1 · 142,766–142,846 bp · +
trnI-CAU · NC_067706.1 · 150,371–150,444 bp · +
rpl23 · NC_067706.1 · 150,610–150,891 bp · +
rpl2 · NC_067706.1 · 150,910–152,388 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Isodon chionanthus
ANNOTATED PLASTOME
NC_067706.1
152,498 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
ATP synthase
Ribosomal protein
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38124 76249 114374 152498 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK OOB09_pgp086 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 11 85 75 Locate
psbA gene − 389 1447 1059 Locate
trnK-UUU gene − 1679 4260 2582 Locate
matK gene − 2000 3520 1521 Locate
OOB09_pgp086 gene − 4786 5931 1146 Locate
trnQ-UUG gene − 6871 6942 72 Locate
psbK gene + 7312 7497 186 Locate
psbI gene + 7885 7995 111 Locate
trnS-GCU gene − 8152 8239 88 Locate
trnG-UCC gene + 9002 9761 760 Locate
trnR-UCU gene + 9952 10023 72 Locate
atpA gene − 10127 11650 1524 Locate
atpF gene − 11760 13005 1246 Locate
atpH gene − 13297 13542 246 Locate
atpI gene − 14543 15286 744 Locate
rps2 gene − 15512 16222 711 Locate
rpoC2 gene − 16439 20620 4182 Locate
rpoC1 gene − 20785 23618 2834 Locate
rpoB gene − 23645 26857 3213 Locate
trnC-GCA gene + 28046 28116 71 Locate
petN gene + 28279 28368 90 Locate
psbM gene − 29360 29464 105 Locate
trnD-GUC gene − 29983 30056 74 Locate
trnY-GUA gene − 30167 30250 84 Locate
trnE-UUC gene − 30328 30400 73 Locate
trnT-GGU gene + 31010 31081 72 Locate
psbD gene + 32399 33460 1062 Locate
psbC gene + 33408 34829 1422 Locate
trnS-UGA gene − 35064 35156 93 Locate
psbZ gene + 35497 35685 189 Locate
trnG-GCC gene + 35930 36000 71 Locate
trnfM-CAU gene − 36188 36261 74 Locate
rps14 gene − 36407 36709 303 Locate
psaB gene − 36832 39036 2205 Locate
psaA gene − 39062 41314 2253 Locate
ycf3 gene − 42087 44034 1948 Locate
trnS-GGA gene + 44792 44878 87 Locate
rps4 gene − 45179 45784 606 Locate
trnT-UGU gene − 46179 46251 73 Locate
trnL-UAA gene + 46937 47500 564 Locate
trnF-GAA gene + 47794 47866 73 Locate
ndhJ gene − 48534 49010 477 Locate
ndhK gene − 49121 49798 678 Locate
ndhC gene − 49850 50212 363 Locate
trnV-UAC gene − 51164 51819 656 Locate
trnM-CAU gene + 52000 52072 73 Locate
atpE gene − 52273 52674 402 Locate
atpB gene − 52671 54167 1497 Locate
rbcL gene + 54958 56391 1434 Locate
accD gene + 57090 58571 1482 Locate
psaI gene + 59271 59381 111 Locate
ycf4 gene + 59832 60386 555 Locate
cemA gene + 60970 61659 690 Locate
petA gene + 61874 62836 963 Locate
psbJ gene − 63875 63997 123 Locate
psbL gene − 64132 64248 117 Locate
psbF gene − 64272 64391 120 Locate
psbE gene − 64406 64657 252 Locate
petL gene + 65550 65645 96 Locate
petG gene + 65820 65933 114 Locate
trnW-CCA gene − 66056 66129 74 Locate
trnP-UGG gene − 66298 66371 74 Locate
psaJ gene + 66653 66787 135 Locate
rpl33 gene + 67249 67449 201 Locate
rps18 gene + 67616 67921 306 Locate
rpl20 gene − 68157 68543 387 Locate
rps12 gene − 69279 69392 114 Locate
clpP gene − 69511 71428 1918 Locate
psbB gene + 71901 73427 1527 Locate
psbT gene + 73611 73712 102 Locate
psbN gene − 73778 73909 132 Locate
psbH gene + 74015 74233 219 Locate
petB gene + 74359 75719 1361 Locate
petD gene + 75908 77100 1193 Locate
rpoA gene − 77277 78284 1008 Locate
rps11 gene − 78356 78772 417 Locate
rpl36 gene − 78888 79001 114 Locate
infA gene − 79097 79330 234 Locate
rps8 gene − 79457 79861 405 Locate
rpl14 gene − 80044 80412 369 Locate
rpl16 gene − 80546 81813 1268 Locate
rps3 gene − 81957 82619 663 Locate
rpl22 gene − 82604 83077 474 Locate
rps19 gene − 83142 83420 279 Locate
rpl2 gene − 83488 84966 1479 Locate
rpl23 gene − 84985 85266 282 Locate
trnI-CAU gene − 85432 85505 74 Locate
ycf2 gene + 85600 92430 6831 Locate
ycf15 gene + 92620 92769 150 Locate
trnL-CAA gene − 93030 93110 81 Locate
ndhB gene − 93682 95889 2208 Locate
rps7 gene − 96160 96627 468 Locate
rps12 gene − 96681 97473 793 Locate
trnV-GAC gene + 99135 99206 72 Locate
rrn16 gene + 99433 100923 1491 Locate
trnI-GAU gene + 101221 102239 1019 Locate
trnA-UGC gene + 102304 103182 879 Locate
rrn23 gene + 103354 106164 2811 Locate
rrn4.5 gene + 106263 106365 103 Locate
rrn5 gene + 106621 106741 121 Locate
trnR-ACG gene + 106985 107058 74 Locate
trnN-GUU gene − 107625 107696 72 Locate
ycf1 gene + 108038 109168 1131 Locate
ndhF gene − 109062 111293 2232 Locate
rpl32 gene + 111769 111939 171 Locate
trnL-UAG gene + 112704 112783 80 Locate
ccsA gene + 112872 113843 972 Locate
ndhD gene − 114075 115604 1530 Locate
psaC gene − 115695 115940 246 Locate
ndhE gene − 116196 116501 306 Locate
ndhG gene − 116716 117246 531 Locate
ndhI gene − 117606 118112 507 Locate
ndhA gene − 118193 120316 2124 Locate
ndhH gene − 120318 121499 1182 Locate
rps15 gene − 121614 121886 273 Locate
ycf1 gene − 122316 127838 5523 Locate
trnN-GUU gene + 128180 128251 72 Locate
trnR-ACG gene − 128818 128891 74 Locate
rrn5 gene − 129135 129255 121 Locate
rrn4.5 gene − 129511 129613 103 Locate
rrn23 gene − 129712 132522 2811 Locate
trnA-UGC gene − 132694 133572 879 Locate
trnI-GAU gene − 133637 134655 1019 Locate
rrn16 gene − 134953 136443 1491 Locate
trnV-GAC gene − 136670 136741 72 Locate
rps12 gene + 138403 139195 793 Locate
rps7 gene + 139249 139716 468 Locate
ndhB gene + 139987 142194 2208 Locate
trnL-CAA gene + 142766 142846 81 Locate
ycf15 gene − 143107 143256 150 Locate
ycf2 gene − 143446 150276 6831 Locate
trnI-CAU gene + 150371 150444 74 Locate
rpl23 gene + 150610 150891 282 Locate
rpl2 gene + 150910 152388 1479 Locate
Status Available
Accession NC_067706.1
Length 152,498 bp
GC content 37.6%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 16 Atp Synthase 6 Ribosomal Protein 25 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources