Isodon coetsa var. cavaleriei chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · ON858844.1 · 11–85 bp · −
psbA · ON858844.1 · 393–1,451 bp · −
trnK-UUU · ON858844.1 · 1,683–4,258 bp · −
matK · ON858844.1 · 2,003–3,523 bp · −
trnQ-UUG · ON858844.1 · 6,873–6,944 bp · −
trnS-GCU · ON858844.1 · 8,177–8,264 bp · −
atpA · ON858844.1 · 10,166–11,689 bp · −
atpF · ON858844.1 · 11,794–13,039 bp · −
atpH · ON858844.1 · 13,331–13,576 bp · −
atpI · ON858844.1 · 14,584–15,327 bp · −
rps2 · ON858844.1 · 15,553–16,263 bp · −
rpoC2 · ON858844.1 · 16,480–20,661 bp · −
rpoC1 · ON858844.1 · 20,826–23,664 bp · −
rpoB · ON858844.1 · 23,691–26,903 bp · −
psbM · ON858844.1 · 29,407–29,511 bp · −
trnD-GUC · ON858844.1 · 30,030–30,103 bp · −
trnY-GUA · ON858844.1 · 30,214–30,297 bp · −
trnE-UUC · ON858844.1 · 30,375–30,447 bp · −
trnS-UGA · ON858844.1 · 35,114–35,206 bp · −
trnfM-CAU · ON858844.1 · 36,241–36,314 bp · −
rps14 · ON858844.1 · 36,460–36,762 bp · −
psaB · ON858844.1 · 36,885–39,089 bp · −
psaA · ON858844.1 · 39,115–41,367 bp · −
ycf3 · ON858844.1 · 42,141–44,088 bp · −
rps4 · ON858844.1 · 45,336–45,941 bp · −
trnT-UGU · ON858844.1 · 46,367–46,439 bp · −
ndhJ · ON858844.1 · 48,704–49,180 bp · −
ndhK · ON858844.1 · 49,285–49,962 bp · −
ndhC · ON858844.1 · 50,014–50,376 bp · −
trnV-UAC · ON858844.1 · 51,333–51,988 bp · −
atpE · ON858844.1 · 52,442–52,843 bp · −
atpB · ON858844.1 · 52,840–54,336 bp · −
psbJ · ON858844.1 · 64,052–64,174 bp · −
psbL · ON858844.1 · 64,309–64,425 bp · −
psbF · ON858844.1 · 64,449–64,568 bp · −
psbE · ON858844.1 · 64,583–64,834 bp · −
trnW-CCA · ON858844.1 · 66,224–66,297 bp · −
trnP-UGG · ON858844.1 · 66,466–66,539 bp · −
rpl20 · ON858844.1 · 68,331–68,717 bp · −
rps12 · ON858844.1 · 69,452–69,565 bp · −
rps12 · ON858844.1 · 96,863–97,655 bp · −
clpP · ON858844.1 · 69,684–71,601 bp · −
psbN · ON858844.1 · 73,952–74,083 bp · −
rpoA · ON858844.1 · 77,451–78,458 bp · −
rps11 · ON858844.1 · 78,530–78,946 bp · −
rpl36 · ON858844.1 · 79,062–79,175 bp · −
infA · ON858844.1 · 79,271–79,504 bp · −
rps8 · ON858844.1 · 79,631–80,035 bp · −
rpl14 · ON858844.1 · 80,226–80,594 bp · −
rpl16 · ON858844.1 · 80,728–81,995 bp · −
rps3 · ON858844.1 · 82,139–82,801 bp · −
rpl22 · ON858844.1 · 82,786–83,259 bp · −
rps19 · ON858844.1 · 83,324–83,602 bp · −
rpl2 · ON858844.1 · 83,670–85,148 bp · −
rpl23 · ON858844.1 · 85,167–85,448 bp · −
trnI-CAU · ON858844.1 · 85,614–85,687 bp · −
trnL-CAA · ON858844.1 · 93,212–93,292 bp · −
ndhB · ON858844.1 · 93,864–96,071 bp · −
rps7 · ON858844.1 · 96,342–96,809 bp · −
trnN-GUU · ON858844.1 · 107,807–107,878 bp · −
ndhF · ON858844.1 · 109,244–111,475 bp · −
ndhD · ON858844.1 · 114,249–115,778 bp · −
psaC · ON858844.1 · 115,869–116,114 bp · −
ndhE · ON858844.1 · 116,370–116,675 bp · −
ndhG · ON858844.1 · 116,890–117,420 bp · −
ndhI · ON858844.1 · 117,782–118,288 bp · −
ndhA · ON858844.1 · 118,369–120,492 bp · −
ndhH · ON858844.1 · 120,494–121,675 bp · −
rps15 · ON858844.1 · 121,790–122,062 bp · −
ycf1 · ON858844.1 · 122,492–128,014 bp · −
trnR-ACG · ON858844.1 · 128,994–129,067 bp · −
rrn5 · ON858844.1 · 129,311–129,431 bp · −
rrn4.5 · ON858844.1 · 129,687–129,789 bp · −
rrn23 · ON858844.1 · 129,888–132,698 bp · −
trnA-UGC · ON858844.1 · 132,870–133,748 bp · −
trnI-GAU · ON858844.1 · 133,813–134,831 bp · −
rrn16 · ON858844.1 · 135,129–136,619 bp · −
trnV-GAC · ON858844.1 · 136,846–136,917 bp · −
ycf15 · ON858844.1 · 143,283–143,432 bp · −
ycf2 · ON858844.1 · 143,622–150,452 bp · −
psbK · ON858844.1 · 7,338–7,523 bp · +
psbI · ON858844.1 · 7,911–8,021 bp · +
trnG-UCC · ON858844.1 · 9,030–9,790 bp · +
trnR-UCU · ON858844.1 · 9,991–10,062 bp · +
trnC-GCA · ON858844.1 · 28,093–28,163 bp · +
petN · ON858844.1 · 28,326–28,415 bp · +
trnT-GGU · ON858844.1 · 31,057–31,128 bp · +
psbD · ON858844.1 · 32,446–33,507 bp · +
psbC · ON858844.1 · 33,455–34,876 bp · +
psbZ · ON858844.1 · 35,547–35,735 bp · +
trnG-GCC · ON858844.1 · 35,980–36,050 bp · +
trnS-GGA · ON858844.1 · 44,953–45,039 bp · +
trnL-UAA · ON858844.1 · 47,127–47,670 bp · +
trnF-GAA · ON858844.1 · 47,964–48,036 bp · +
trnM-CAU · ON858844.1 · 52,169–52,241 bp · +
rbcL · ON858844.1 · 55,128–56,561 bp · +
accD · ON858844.1 · 57,266–58,747 bp · +
psaI · ON858844.1 · 59,454–59,564 bp · +
ycf4 · ON858844.1 · 60,011–60,565 bp · +
cemA · ON858844.1 · 61,148–61,837 bp · +
petA · ON858844.1 · 62,052–63,014 bp · +
petL · ON858844.1 · 65,727–65,822 bp · +
petG · ON858844.1 · 65,997–66,110 bp · +
psaJ · ON858844.1 · 66,829–66,963 bp · +
rpl33 · ON858844.1 · 67,425–67,625 bp · +
rps18 · ON858844.1 · 67,792–68,097 bp · +
rps12 · ON858844.1 · 138,579–139,371 bp · +
psbB · ON858844.1 · 72,074–73,600 bp · +
psbT · ON858844.1 · 73,785–73,886 bp · +
psbH · ON858844.1 · 74,189–74,407 bp · +
petB · ON858844.1 · 74,533–75,893 bp · +
petD · ON858844.1 · 76,082–77,274 bp · +
ycf2 · ON858844.1 · 85,782–92,612 bp · +
ycf15 · ON858844.1 · 92,802–92,951 bp · +
trnV-GAC · ON858844.1 · 99,317–99,388 bp · +
rrn16 · ON858844.1 · 99,615–101,105 bp · +
trnI-GAU · ON858844.1 · 101,403–102,421 bp · +
trnA-UGC · ON858844.1 · 102,486–103,364 bp · +
rrn23 · ON858844.1 · 103,536–106,346 bp · +
rrn4.5 · ON858844.1 · 106,445–106,547 bp · +
rrn5 · ON858844.1 · 106,803–106,923 bp · +
trnR-ACG · ON858844.1 · 107,167–107,240 bp · +
ycf1 · ON858844.1 · 108,220–109,350 bp · +
rpl32 · ON858844.1 · 111,944–112,114 bp · +
trnL-UAG · ON858844.1 · 112,878–112,957 bp · +
ccsA · ON858844.1 · 113,046–114,017 bp · +
trnN-GUU · ON858844.1 · 128,356–128,427 bp · +
rps7 · ON858844.1 · 139,425–139,892 bp · +
ndhB · ON858844.1 · 140,163–142,370 bp · +
trnL-CAA · ON858844.1 · 142,942–143,022 bp · +
trnI-CAU · ON858844.1 · 150,547–150,620 bp · +
rpl23 · ON858844.1 · 150,786–151,067 bp · +
rpl2 · ON858844.1 · 151,086–152,564 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Isodon coetsa var. cavaleriei
ANNOTATED PLASTOME
ON858844.1
152,674 bp · 132 genes
Gene function
Transfer RNA
Photosystem II
Other
ATP synthase
Ribosomal protein
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38168 76337 114506 152674 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
133 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 11 85 75 Locate
psbA gene − 393 1451 1059 Locate
trnK-UUU gene − 1683 4258 2576 Locate
matK gene − 2003 3523 1521 Locate
trnQ-UUG gene − 6873 6944 72 Locate
psbK gene + 7338 7523 186 Locate
psbI gene + 7911 8021 111 Locate
trnS-GCU gene − 8177 8264 88 Locate
trnG-UCC gene + 9030 9790 761 Locate
trnR-UCU gene + 9991 10062 72 Locate
atpA gene − 10166 11689 1524 Locate
atpF gene − 11794 13039 1246 Locate
atpH gene − 13331 13576 246 Locate
atpI gene − 14584 15327 744 Locate
rps2 gene − 15553 16263 711 Locate
rpoC2 gene − 16480 20661 4182 Locate
rpoC1 gene − 20826 23664 2839 Locate
rpoB gene − 23691 26903 3213 Locate
trnC-GCA gene + 28093 28163 71 Locate
petN gene + 28326 28415 90 Locate
psbM gene − 29407 29511 105 Locate
trnD-GUC gene − 30030 30103 74 Locate
trnY-GUA gene − 30214 30297 84 Locate
trnE-UUC gene − 30375 30447 73 Locate
trnT-GGU gene + 31057 31128 72 Locate
psbD gene + 32446 33507 1062 Locate
psbC gene + 33455 34876 1422 Locate
trnS-UGA gene − 35114 35206 93 Locate
psbZ gene + 35547 35735 189 Locate
trnG-GCC gene + 35980 36050 71 Locate
trnfM-CAU gene − 36241 36314 74 Locate
rps14 gene − 36460 36762 303 Locate
psaB gene − 36885 39089 2205 Locate
psaA gene − 39115 41367 2253 Locate
ycf3 gene − 42141 44088 1948 Locate
trnS-GGA gene + 44953 45039 87 Locate
rps4 gene − 45336 45941 606 Locate
trnT-UGU gene − 46367 46439 73 Locate
trnL-UAA gene + 47127 47670 544 Locate
trnF-GAA gene + 47964 48036 73 Locate
ndhJ gene − 48704 49180 477 Locate
ndhK gene − 49285 49962 678 Locate
ndhC gene − 50014 50376 363 Locate
trnV-UAC gene − 51333 51988 656 Locate
trnM-CAU gene + 52169 52241 73 Locate
atpE gene − 52442 52843 402 Locate
atpB gene − 52840 54336 1497 Locate
rbcL gene + 55128 56561 1434 Locate
accD gene + 57266 58747 1482 Locate
psaI gene + 59454 59564 111 Locate
ycf4 gene + 60011 60565 555 Locate
cemA gene + 61148 61837 690 Locate
petA gene + 62052 63014 963 Locate
psbJ gene − 64052 64174 123 Locate
psbL gene − 64309 64425 117 Locate
psbF gene − 64449 64568 120 Locate
psbE gene − 64583 64834 252 Locate
petL gene + 65727 65822 96 Locate
petG gene + 65997 66110 114 Locate
trnW-CCA gene − 66224 66297 74 Locate
trnP-UGG gene − 66466 66539 74 Locate
psaJ gene + 66829 66963 135 Locate
rpl33 gene + 67425 67625 201 Locate
rps18 gene + 67792 68097 306 Locate
rpl20 gene − 68331 68717 387 Locate
rps12 gene − 69452 69565 114 Locate
clpP gene − 69684 71601 1918 Locate
psbB gene + 72074 73600 1527 Locate
psbT gene + 73785 73886 102 Locate
psbN gene − 73952 74083 132 Locate
psbH gene + 74189 74407 219 Locate
petB gene + 74533 75893 1361 Locate
petD gene + 76082 77274 1193 Locate
rpoA gene − 77451 78458 1008 Locate
rps11 gene − 78530 78946 417 Locate
rpl36 gene − 79062 79175 114 Locate
infA gene − 79271 79504 234 Locate
rps8 gene − 79631 80035 405 Locate
rpl14 gene − 80226 80594 369 Locate
rpl16 gene − 80728 81995 1268 Locate
rps3 gene − 82139 82801 663 Locate
rpl22 gene − 82786 83259 474 Locate
rps19 gene − 83324 83602 279 Locate
rpl2 gene − 83670 85148 1479 Locate
rpl23 gene − 85167 85448 282 Locate
trnI-CAU gene − 85614 85687 74 Locate
ycf2 gene + 85782 92612 6831 Locate
ycf15 gene + 92802 92951 150 Locate
trnL-CAA gene − 93212 93292 81 Locate
ndhB gene − 93864 96071 2208 Locate
rps7 gene − 96342 96809 468 Locate
rps12 gene − 96863 97655 793 Locate
trnV-GAC gene + 99317 99388 72 Locate
rrn16 gene + 99615 101105 1491 Locate
trnI-GAU gene + 101403 102421 1019 Locate
trnA-UGC gene + 102486 103364 879 Locate
rrn23 gene + 103536 106346 2811 Locate
rrn4.5 gene + 106445 106547 103 Locate
rrn5 gene + 106803 106923 121 Locate
trnR-ACG gene + 107167 107240 74 Locate
trnN-GUU gene − 107807 107878 72 Locate
ycf1 gene + 108220 109350 1131 Locate
ndhF gene − 109244 111475 2232 Locate
rpl32 gene + 111944 112114 171 Locate
trnL-UAG gene + 112878 112957 80 Locate
ccsA gene + 113046 114017 972 Locate
ndhD gene − 114249 115778 1530 Locate
psaC gene − 115869 116114 246 Locate
ndhE gene − 116370 116675 306 Locate
ndhG gene − 116890 117420 531 Locate
ndhI gene − 117782 118288 507 Locate
ndhA gene − 118369 120492 2124 Locate
ndhH gene − 120494 121675 1182 Locate
rps15 gene − 121790 122062 273 Locate
ycf1 gene − 122492 128014 5523 Locate
trnN-GUU gene + 128356 128427 72 Locate
trnR-ACG gene − 128994 129067 74 Locate
rrn5 gene − 129311 129431 121 Locate
rrn4.5 gene − 129687 129789 103 Locate
rrn23 gene − 129888 132698 2811 Locate
trnA-UGC gene − 132870 133748 879 Locate
trnI-GAU gene − 133813 134831 1019 Locate
rrn16 gene − 135129 136619 1491 Locate
trnV-GAC gene − 136846 136917 72 Locate
rps12 gene + 138579 139371 793 Locate
rps7 gene + 139425 139892 468 Locate
ndhB gene + 140163 142370 2208 Locate
trnL-CAA gene + 142942 143022 81 Locate
ycf15 gene − 143283 143432 150 Locate
ycf2 gene − 143622 150452 6831 Locate
trnI-CAU gene + 150547 150620 74 Locate
rpl23 gene + 150786 151067 282 Locate
rpl2 gene + 151086 152564 1479 Locate
Status Available
Accession ON858844.1
Length 152,674 bp
GC content 37.6%
Annotated genes 132
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Atp Synthase 6 Ribosomal Protein 25 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources