Isodon coetsa var. coetsa chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · ON858843.1 · 11–85 bp · −
psbA · ON858843.1 · 395–1,453 bp · −
trnK-UUU · ON858843.1 · 1,685–4,258 bp · −
matK · ON858843.1 · 1,997–3,517 bp · −
trnQ-UUG · ON858843.1 · 6,876–6,947 bp · −
trnS-GCU · ON858843.1 · 8,182–8,269 bp · −
atpA · ON858843.1 · 10,161–11,684 bp · −
atpF · ON858843.1 · 11,792–13,036 bp · −
atpH · ON858843.1 · 13,345–13,590 bp · −
atpI · ON858843.1 · 14,591–15,334 bp · −
rps2 · ON858843.1 · 15,560–16,270 bp · −
rpoC2 · ON858843.1 · 16,484–20,665 bp · −
rpoC1 · ON858843.1 · 20,830–23,663 bp · −
rpoB · ON858843.1 · 23,690–26,902 bp · −
psbM · ON858843.1 · 29,402–29,506 bp · −
trnD-GUC · ON858843.1 · 30,025–30,098 bp · −
trnY-GUA · ON858843.1 · 30,209–30,292 bp · −
trnE-UUC · ON858843.1 · 30,370–30,442 bp · −
trnS-UGA · ON858843.1 · 35,101–35,193 bp · −
trnfM-CAU · ON858843.1 · 36,230–36,303 bp · −
rps14 · ON858843.1 · 36,449–36,751 bp · −
psaB · ON858843.1 · 36,874–39,078 bp · −
psaA · ON858843.1 · 39,104–41,356 bp · −
ycf3 · ON858843.1 · 42,156–44,103 bp · −
rps4 · ON858843.1 · 45,350–45,955 bp · −
trnT-UGU · ON858843.1 · 46,387–46,459 bp · −
ndhJ · ON858843.1 · 48,745–49,221 bp · −
ndhK · ON858843.1 · 49,332–50,009 bp · −
ndhC · ON858843.1 · 50,061–50,423 bp · −
trnV-UAC · ON858843.1 · 51,380–52,033 bp · −
atpE · ON858843.1 · 52,487–52,888 bp · −
atpB · ON858843.1 · 52,885–54,381 bp · −
psbJ · ON858843.1 · 64,104–64,226 bp · −
psbL · ON858843.1 · 64,361–64,477 bp · −
psbF · ON858843.1 · 64,501–64,620 bp · −
psbE · ON858843.1 · 64,635–64,886 bp · −
trnW-CCA · ON858843.1 · 66,285–66,358 bp · −
trnP-UGG · ON858843.1 · 66,527–66,600 bp · −
rpl20 · ON858843.1 · 68,383–68,769 bp · −
rps12 · ON858843.1 · 69,501–69,614 bp · −
rps12 · ON858843.1 · 96,902–97,695 bp · −
clpP · ON858843.1 · 69,732–71,650 bp · −
psbN · ON858843.1 · 73,999–74,130 bp · −
rpoA · ON858843.1 · 77,501–78,508 bp · −
rps11 · ON858843.1 · 78,580–78,996 bp · −
rpl36 · ON858843.1 · 79,112–79,225 bp · −
infA · ON858843.1 · 79,321–79,554 bp · −
rps8 · ON858843.1 · 79,682–80,086 bp · −
rpl14 · ON858843.1 · 80,269–80,637 bp · −
rpl16 · ON858843.1 · 80,771–82,038 bp · −
rps3 · ON858843.1 · 82,182–82,844 bp · −
rpl22 · ON858843.1 · 82,829–83,302 bp · −
rps19 · ON858843.1 · 83,367–83,645 bp · −
rpl2 · ON858843.1 · 83,715–85,193 bp · −
rpl23 · ON858843.1 · 85,212–85,493 bp · −
trnI-CAU · ON858843.1 · 85,659–85,732 bp · −
trnL-CAA · ON858843.1 · 93,251–93,331 bp · −
ndhB · ON858843.1 · 93,903–96,110 bp · −
rps7 · ON858843.1 · 96,381–96,848 bp · −
trnN-GUU · ON858843.1 · 107,852–107,923 bp · −
ndhF · ON858843.1 · 109,289–111,520 bp · −
ndhD · ON858843.1 · 114,303–115,832 bp · −
psaC · ON858843.1 · 115,923–116,168 bp · −
ndhE · ON858843.1 · 116,424–116,729 bp · −
ndhG · ON858843.1 · 116,944–117,474 bp · −
ndhI · ON858843.1 · 117,836–118,342 bp · −
ndhA · ON858843.1 · 118,423–120,537 bp · −
ndhH · ON858843.1 · 120,539–121,720 bp · −
rps15 · ON858843.1 · 121,835–122,107 bp · −
ycf1 · ON858843.1 · 122,537–128,083 bp · −
trnR-ACG · ON858843.1 · 129,068–129,141 bp · −
rrn5 · ON858843.1 · 129,385–129,505 bp · −
rrn4.5 · ON858843.1 · 129,761–129,863 bp · −
rrn23 · ON858843.1 · 129,962–132,772 bp · −
trnA-UGC · ON858843.1 · 132,944–133,822 bp · −
trnI-GAU · ON858843.1 · 133,887–134,905 bp · −
rrn16 · ON858843.1 · 135,203–136,693 bp · −
trnV-GAC · ON858843.1 · 136,920–136,991 bp · −
ycf15 · ON858843.1 · 143,358–143,507 bp · −
ycf2 · ON858843.1 · 143,697–150,527 bp · −
psbK · ON858843.1 · 7,341–7,526 bp · +
psbI · ON858843.1 · 7,915–8,025 bp · +
trnG-UCC · ON858843.1 · 9,013–9,772 bp · +
trnR-UCU · ON858843.1 · 9,986–10,057 bp · +
trnC-GCA · ON858843.1 · 28,091–28,161 bp · +
petN · ON858843.1 · 28,324–28,413 bp · +
trnT-GGU · ON858843.1 · 31,046–31,117 bp · +
psbD · ON858843.1 · 32,435–33,496 bp · +
psbC · ON858843.1 · 33,444–34,865 bp · +
psbZ · ON858843.1 · 35,534–35,722 bp · +
trnG-GCC · ON858843.1 · 35,967–36,037 bp · +
trnS-GGA · ON858843.1 · 44,967–45,053 bp · +
trnL-UAA · ON858843.1 · 47,145–47,710 bp · +
trnF-GAA · ON858843.1 · 48,004–48,076 bp · +
trnM-CAU · ON858843.1 · 52,214–52,286 bp · +
rbcL · ON858843.1 · 55,172–56,605 bp · +
accD · ON858843.1 · 57,320–58,801 bp · +
psaI · ON858843.1 · 59,503–59,613 bp · +
ycf4 · ON858843.1 · 60,057–60,611 bp · +
cemA · ON858843.1 · 61,201–61,890 bp · +
petA · ON858843.1 · 62,105–63,067 bp · +
petL · ON858843.1 · 65,779–65,874 bp · +
petG · ON858843.1 · 66,049–66,162 bp · +
psaJ · ON858843.1 · 66,880–67,014 bp · +
rpl33 · ON858843.1 · 67,475–67,675 bp · +
rps18 · ON858843.1 · 67,842–68,147 bp · +
rps12 · ON858843.1 · 138,653–139,446 bp · +
psbB · ON858843.1 · 72,123–73,649 bp · +
psbT · ON858843.1 · 73,832–73,933 bp · +
psbH · ON858843.1 · 74,236–74,454 bp · +
petB · ON858843.1 · 74,580–75,943 bp · +
petD · ON858843.1 · 76,132–77,324 bp · +
ycf2 · ON858843.1 · 85,821–92,651 bp · +
ycf15 · ON858843.1 · 92,841–92,990 bp · +
trnV-GAC · ON858843.1 · 99,357–99,428 bp · +
rrn16 · ON858843.1 · 99,655–101,145 bp · +
trnI-GAU · ON858843.1 · 101,443–102,461 bp · +
trnA-UGC · ON858843.1 · 102,526–103,404 bp · +
rrn23 · ON858843.1 · 103,576–106,386 bp · +
rrn4.5 · ON858843.1 · 106,485–106,587 bp · +
rrn5 · ON858843.1 · 106,843–106,963 bp · +
trnR-ACG · ON858843.1 · 107,207–107,280 bp · +
ycf1 · ON858843.1 · 108,265–109,395 bp · +
rpl32 · ON858843.1 · 111,996–112,166 bp · +
trnL-UAG · ON858843.1 · 112,932–113,011 bp · +
ccsA · ON858843.1 · 113,100–114,071 bp · +
trnN-GUU · ON858843.1 · 128,425–128,496 bp · +
rps7 · ON858843.1 · 139,500–139,967 bp · +
ndhB · ON858843.1 · 140,238–142,445 bp · +
trnL-CAA · ON858843.1 · 143,017–143,097 bp · +
trnI-CAU · ON858843.1 · 150,616–150,689 bp · +
rpl23 · ON858843.1 · 150,855–151,136 bp · +
rpl2 · ON858843.1 · 151,155–152,633 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Isodon coetsa var. coetsa
ANNOTATED PLASTOME
ON858843.1
152,745 bp · 132 genes
Gene function
Transfer RNA
Photosystem II
Other
ATP synthase
Ribosomal protein
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38186 76372 114559 152745 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
133 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 11 85 75 Locate
psbA gene − 395 1453 1059 Locate
trnK-UUU gene − 1685 4258 2574 Locate
matK gene − 1997 3517 1521 Locate
trnQ-UUG gene − 6876 6947 72 Locate
psbK gene + 7341 7526 186 Locate
psbI gene + 7915 8025 111 Locate
trnS-GCU gene − 8182 8269 88 Locate
trnG-UCC gene + 9013 9772 760 Locate
trnR-UCU gene + 9986 10057 72 Locate
atpA gene − 10161 11684 1524 Locate
atpF gene − 11792 13036 1245 Locate
atpH gene − 13345 13590 246 Locate
atpI gene − 14591 15334 744 Locate
rps2 gene − 15560 16270 711 Locate
rpoC2 gene − 16484 20665 4182 Locate
rpoC1 gene − 20830 23663 2834 Locate
rpoB gene − 23690 26902 3213 Locate
trnC-GCA gene + 28091 28161 71 Locate
petN gene + 28324 28413 90 Locate
psbM gene − 29402 29506 105 Locate
trnD-GUC gene − 30025 30098 74 Locate
trnY-GUA gene − 30209 30292 84 Locate
trnE-UUC gene − 30370 30442 73 Locate
trnT-GGU gene + 31046 31117 72 Locate
psbD gene + 32435 33496 1062 Locate
psbC gene + 33444 34865 1422 Locate
trnS-UGA gene − 35101 35193 93 Locate
psbZ gene + 35534 35722 189 Locate
trnG-GCC gene + 35967 36037 71 Locate
trnfM-CAU gene − 36230 36303 74 Locate
rps14 gene − 36449 36751 303 Locate
psaB gene − 36874 39078 2205 Locate
psaA gene − 39104 41356 2253 Locate
ycf3 gene − 42156 44103 1948 Locate
trnS-GGA gene + 44967 45053 87 Locate
rps4 gene − 45350 45955 606 Locate
trnT-UGU gene − 46387 46459 73 Locate
trnL-UAA gene + 47145 47710 566 Locate
trnF-GAA gene + 48004 48076 73 Locate
ndhJ gene − 48745 49221 477 Locate
ndhK gene − 49332 50009 678 Locate
ndhC gene − 50061 50423 363 Locate
trnV-UAC gene − 51380 52033 654 Locate
trnM-CAU gene + 52214 52286 73 Locate
atpE gene − 52487 52888 402 Locate
atpB gene − 52885 54381 1497 Locate
rbcL gene + 55172 56605 1434 Locate
accD gene + 57320 58801 1482 Locate
psaI gene + 59503 59613 111 Locate
ycf4 gene + 60057 60611 555 Locate
cemA gene + 61201 61890 690 Locate
petA gene + 62105 63067 963 Locate
psbJ gene − 64104 64226 123 Locate
psbL gene − 64361 64477 117 Locate
psbF gene − 64501 64620 120 Locate
psbE gene − 64635 64886 252 Locate
petL gene + 65779 65874 96 Locate
petG gene + 66049 66162 114 Locate
trnW-CCA gene − 66285 66358 74 Locate
trnP-UGG gene − 66527 66600 74 Locate
psaJ gene + 66880 67014 135 Locate
rpl33 gene + 67475 67675 201 Locate
rps18 gene + 67842 68147 306 Locate
rpl20 gene − 68383 68769 387 Locate
rps12 gene − 69501 69614 114 Locate
clpP gene − 69732 71650 1919 Locate
psbB gene + 72123 73649 1527 Locate
psbT gene + 73832 73933 102 Locate
psbN gene − 73999 74130 132 Locate
psbH gene + 74236 74454 219 Locate
petB gene + 74580 75943 1364 Locate
petD gene + 76132 77324 1193 Locate
rpoA gene − 77501 78508 1008 Locate
rps11 gene − 78580 78996 417 Locate
rpl36 gene − 79112 79225 114 Locate
infA gene − 79321 79554 234 Locate
rps8 gene − 79682 80086 405 Locate
rpl14 gene − 80269 80637 369 Locate
rpl16 gene − 80771 82038 1268 Locate
rps3 gene − 82182 82844 663 Locate
rpl22 gene − 82829 83302 474 Locate
rps19 gene − 83367 83645 279 Locate
rpl2 gene − 83715 85193 1479 Locate
rpl23 gene − 85212 85493 282 Locate
trnI-CAU gene − 85659 85732 74 Locate
ycf2 gene + 85821 92651 6831 Locate
ycf15 gene + 92841 92990 150 Locate
trnL-CAA gene − 93251 93331 81 Locate
ndhB gene − 93903 96110 2208 Locate
rps7 gene − 96381 96848 468 Locate
rps12 gene − 96902 97695 794 Locate
trnV-GAC gene + 99357 99428 72 Locate
rrn16 gene + 99655 101145 1491 Locate
trnI-GAU gene + 101443 102461 1019 Locate
trnA-UGC gene + 102526 103404 879 Locate
rrn23 gene + 103576 106386 2811 Locate
rrn4.5 gene + 106485 106587 103 Locate
rrn5 gene + 106843 106963 121 Locate
trnR-ACG gene + 107207 107280 74 Locate
trnN-GUU gene − 107852 107923 72 Locate
ycf1 gene + 108265 109395 1131 Locate
ndhF gene − 109289 111520 2232 Locate
rpl32 gene + 111996 112166 171 Locate
trnL-UAG gene + 112932 113011 80 Locate
ccsA gene + 113100 114071 972 Locate
ndhD gene − 114303 115832 1530 Locate
psaC gene − 115923 116168 246 Locate
ndhE gene − 116424 116729 306 Locate
ndhG gene − 116944 117474 531 Locate
ndhI gene − 117836 118342 507 Locate
ndhA gene − 118423 120537 2115 Locate
ndhH gene − 120539 121720 1182 Locate
rps15 gene − 121835 122107 273 Locate
ycf1 gene − 122537 128083 5547 Locate
trnN-GUU gene + 128425 128496 72 Locate
trnR-ACG gene − 129068 129141 74 Locate
rrn5 gene − 129385 129505 121 Locate
rrn4.5 gene − 129761 129863 103 Locate
rrn23 gene − 129962 132772 2811 Locate
trnA-UGC gene − 132944 133822 879 Locate
trnI-GAU gene − 133887 134905 1019 Locate
rrn16 gene − 135203 136693 1491 Locate
trnV-GAC gene − 136920 136991 72 Locate
rps12 gene + 138653 139446 794 Locate
rps7 gene + 139500 139967 468 Locate
ndhB gene + 140238 142445 2208 Locate
trnL-CAA gene + 143017 143097 81 Locate
ycf15 gene − 143358 143507 150 Locate
ycf2 gene − 143697 150527 6831 Locate
trnI-CAU gene + 150616 150689 74 Locate
rpl23 gene + 150855 151136 282 Locate
rpl2 gene + 151155 152633 1479 Locate
Status Available
Accession ON858843.1
Length 152,745 bp
GC content 37.6%
Annotated genes 132
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Atp Synthase 6 Ribosomal Protein 25 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources