Isodon coetsa chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · NC_067646.1 · 11–85 bp · −
psbA · NC_067646.1 · 393–1,451 bp · −
trnK-UUU · NC_067646.1 · 1,683–4,264 bp · −
matK · NC_067646.1 · 2,004–3,524 bp · −
ON852_pgp086 · NC_067646.1 · 4,791–5,936 bp · −
trnQ-UUG · NC_067646.1 · 6,946–7,017 bp · −
trnS-GCU · NC_067646.1 · 8,250–8,337 bp · −
atpA · NC_067646.1 · 10,224–11,747 bp · −
atpF · NC_067646.1 · 11,863–13,108 bp · −
atpH · NC_067646.1 · 13,400–13,645 bp · −
atpI · NC_067646.1 · 14,646–15,389 bp · −
rps2 · NC_067646.1 · 15,615–16,325 bp · −
rpoC2 · NC_067646.1 · 16,539–20,720 bp · −
rpoC1 · NC_067646.1 · 20,885–23,718 bp · −
rpoB · NC_067646.1 · 23,745–26,957 bp · −
psbM · NC_067646.1 · 29,461–29,565 bp · −
trnD-GUC · NC_067646.1 · 30,084–30,157 bp · −
trnY-GUA · NC_067646.1 · 30,268–30,351 bp · −
trnE-UUC · NC_067646.1 · 30,429–30,501 bp · −
trnS-UGA · NC_067646.1 · 35,166–35,258 bp · −
trnfM-CAU · NC_067646.1 · 36,288–36,361 bp · −
rps14 · NC_067646.1 · 36,507–36,809 bp · −
psaB · NC_067646.1 · 36,932–39,136 bp · −
psaA · NC_067646.1 · 39,162–41,414 bp · −
ycf3 · NC_067646.1 · 42,184–44,132 bp · −
rps4 · NC_067646.1 · 45,379–45,984 bp · −
trnT-UGU · NC_067646.1 · 46,410–46,482 bp · −
ndhJ · NC_067646.1 · 48,746–49,222 bp · −
ndhK · NC_067646.1 · 49,333–50,010 bp · −
ndhC · NC_067646.1 · 50,062–50,424 bp · −
trnV-UAC · NC_067646.1 · 51,381–52,036 bp · −
atpE · NC_067646.1 · 52,490–52,891 bp · −
atpB · NC_067646.1 · 52,888–54,384 bp · −
psbJ · NC_067646.1 · 64,100–64,222 bp · −
psbL · NC_067646.1 · 64,357–64,473 bp · −
psbF · NC_067646.1 · 64,497–64,616 bp · −
psbE · NC_067646.1 · 64,631–64,882 bp · −
trnW-CCA · NC_067646.1 · 66,281–66,354 bp · −
trnP-UGG · NC_067646.1 · 66,523–66,596 bp · −
rpl20 · NC_067646.1 · 68,380–68,766 bp · −
rps12 · NC_067646.1 · 69,500–69,613 bp · −
rps12 · NC_067646.1 · 96,907–97,699 bp · −
clpP · NC_067646.1 · 69,732–71,648 bp · −
psbN · NC_067646.1 · 73,999–74,130 bp · −
rpoA · NC_067646.1 · 77,505–78,512 bp · −
rps11 · NC_067646.1 · 78,584–79,000 bp · −
rpl36 · NC_067646.1 · 79,116–79,229 bp · −
infA · NC_067646.1 · 79,325–79,558 bp · −
rps8 · NC_067646.1 · 79,684–80,088 bp · −
rpl14 · NC_067646.1 · 80,271–80,639 bp · −
rpl16 · NC_067646.1 · 80,772–82,039 bp · −
rps3 · NC_067646.1 · 82,183–82,845 bp · −
rpl22 · NC_067646.1 · 82,830–83,303 bp · −
rps19 · NC_067646.1 · 83,368–83,646 bp · −
rpl2 · NC_067646.1 · 83,714–85,192 bp · −
rpl23 · NC_067646.1 · 85,211–85,492 bp · −
trnI-CAU · NC_067646.1 · 85,658–85,731 bp · −
trnL-CAA · NC_067646.1 · 93,256–93,336 bp · −
ndhB · NC_067646.1 · 93,908–96,115 bp · −
rps7 · NC_067646.1 · 96,386–96,853 bp · −
trnN-GUU · NC_067646.1 · 107,850–107,921 bp · −
ndhF · NC_067646.1 · 109,287–111,518 bp · −
ndhD · NC_067646.1 · 114,293–115,822 bp · −
psaC · NC_067646.1 · 115,913–116,158 bp · −
ndhE · NC_067646.1 · 116,414–116,719 bp · −
ndhG · NC_067646.1 · 116,934–117,464 bp · −
ndhI · NC_067646.1 · 117,824–118,330 bp · −
ndhA · NC_067646.1 · 118,411–120,533 bp · −
ndhH · NC_067646.1 · 120,535–121,716 bp · −
rps15 · NC_067646.1 · 121,831–122,103 bp · −
ycf1 · NC_067646.1 · 122,533–128,055 bp · −
trnR-ACG · NC_067646.1 · 129,035–129,108 bp · −
rrn5 · NC_067646.1 · 129,352–129,472 bp · −
rrn4.5 · NC_067646.1 · 129,728–129,830 bp · −
rrn23 · NC_067646.1 · 129,929–132,739 bp · −
trnA-UGC · NC_067646.1 · 132,911–133,789 bp · −
trnI-GAU · NC_067646.1 · 133,854–134,871 bp · −
rrn16 · NC_067646.1 · 135,169–136,659 bp · −
trnV-GAC · NC_067646.1 · 136,886–136,957 bp · −
ycf15 · NC_067646.1 · 143,323–143,472 bp · −
ycf2 · NC_067646.1 · 143,662–150,492 bp · −
psbK · NC_067646.1 · 7,411–7,596 bp · +
psbI · NC_067646.1 · 7,984–8,094 bp · +
trnG-UCC · NC_067646.1 · 9,099–9,858 bp · +
trnR-UCU · NC_067646.1 · 10,049–10,120 bp · +
trnC-GCA · NC_067646.1 · 28,147–28,217 bp · +
petN · NC_067646.1 · 28,380–28,469 bp · +
trnT-GGU · NC_067646.1 · 31,111–31,182 bp · +
psbD · NC_067646.1 · 32,500–33,561 bp · +
psbC · NC_067646.1 · 33,509–34,930 bp · +
psbZ · NC_067646.1 · 35,599–35,787 bp · +
trnG-GCC · NC_067646.1 · 36,032–36,102 bp · +
trnS-GGA · NC_067646.1 · 44,996–45,082 bp · +
trnL-UAA · NC_067646.1 · 47,169–47,712 bp · +
trnF-GAA · NC_067646.1 · 48,006–48,078 bp · +
trnM-CAU · NC_067646.1 · 52,217–52,289 bp · +
rbcL · NC_067646.1 · 55,175–56,608 bp · +
accD · NC_067646.1 · 57,309–58,790 bp · +
psaI · NC_067646.1 · 59,492–59,602 bp · +
ycf4 · NC_067646.1 · 60,049–60,603 bp · +
cemA · NC_067646.1 · 61,194–61,883 bp · +
petA · NC_067646.1 · 62,098–63,060 bp · +
petL · NC_067646.1 · 65,775–65,870 bp · +
petG · NC_067646.1 · 66,045–66,158 bp · +
psaJ · NC_067646.1 · 66,878–67,012 bp · +
rpl33 · NC_067646.1 · 67,472–67,672 bp · +
rps18 · NC_067646.1 · 67,839–68,144 bp · +
rps12 · NC_067646.1 · 138,619–139,411 bp · +
psbB · NC_067646.1 · 72,121–73,647 bp · +
psbT · NC_067646.1 · 73,832–73,933 bp · +
psbH · NC_067646.1 · 74,236–74,454 bp · +
petB · NC_067646.1 · 74,580–75,947 bp · +
petD · NC_067646.1 · 76,136–77,328 bp · +
ycf2 · NC_067646.1 · 85,826–92,656 bp · +
ycf15 · NC_067646.1 · 92,846–92,995 bp · +
trnV-GAC · NC_067646.1 · 99,361–99,432 bp · +
rrn16 · NC_067646.1 · 99,659–101,149 bp · +
trnI-GAU · NC_067646.1 · 101,447–102,464 bp · +
trnA-UGC · NC_067646.1 · 102,529–103,407 bp · +
rrn23 · NC_067646.1 · 103,579–106,389 bp · +
rrn4.5 · NC_067646.1 · 106,488–106,590 bp · +
rrn5 · NC_067646.1 · 106,846–106,966 bp · +
trnR-ACG · NC_067646.1 · 107,210–107,283 bp · +
ycf1 · NC_067646.1 · 108,263–109,393 bp · +
rpl32 · NC_067646.1 · 111,987–112,157 bp · +
trnL-UAG · NC_067646.1 · 112,922–113,001 bp · +
ccsA · NC_067646.1 · 113,090–114,061 bp · +
trnN-GUU · NC_067646.1 · 128,397–128,468 bp · +
rps7 · NC_067646.1 · 139,465–139,932 bp · +
ndhB · NC_067646.1 · 140,203–142,410 bp · +
trnL-CAA · NC_067646.1 · 142,982–143,062 bp · +
trnI-CAU · NC_067646.1 · 150,587–150,660 bp · +
rpl23 · NC_067646.1 · 150,826–151,107 bp · +
rpl2 · NC_067646.1 · 151,126–152,604 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Isodon coetsa
ANNOTATED PLASTOME
NC_067646.1
152,714 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
ATP synthase
Ribosomal protein
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38178 76357 114536 152714 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK ON852_pgp086 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 11 85 75 Locate
psbA gene − 393 1451 1059 Locate
trnK-UUU gene − 1683 4264 2582 Locate
matK gene − 2004 3524 1521 Locate
ON852_pgp086 gene − 4791 5936 1146 Locate
trnQ-UUG gene − 6946 7017 72 Locate
psbK gene + 7411 7596 186 Locate
psbI gene + 7984 8094 111 Locate
trnS-GCU gene − 8250 8337 88 Locate
trnG-UCC gene + 9099 9858 760 Locate
trnR-UCU gene + 10049 10120 72 Locate
atpA gene − 10224 11747 1524 Locate
atpF gene − 11863 13108 1246 Locate
atpH gene − 13400 13645 246 Locate
atpI gene − 14646 15389 744 Locate
rps2 gene − 15615 16325 711 Locate
rpoC2 gene − 16539 20720 4182 Locate
rpoC1 gene − 20885 23718 2834 Locate
rpoB gene − 23745 26957 3213 Locate
trnC-GCA gene + 28147 28217 71 Locate
petN gene + 28380 28469 90 Locate
psbM gene − 29461 29565 105 Locate
trnD-GUC gene − 30084 30157 74 Locate
trnY-GUA gene − 30268 30351 84 Locate
trnE-UUC gene − 30429 30501 73 Locate
trnT-GGU gene + 31111 31182 72 Locate
psbD gene + 32500 33561 1062 Locate
psbC gene + 33509 34930 1422 Locate
trnS-UGA gene − 35166 35258 93 Locate
psbZ gene + 35599 35787 189 Locate
trnG-GCC gene + 36032 36102 71 Locate
trnfM-CAU gene − 36288 36361 74 Locate
rps14 gene − 36507 36809 303 Locate
psaB gene − 36932 39136 2205 Locate
psaA gene − 39162 41414 2253 Locate
ycf3 gene − 42184 44132 1949 Locate
trnS-GGA gene + 44996 45082 87 Locate
rps4 gene − 45379 45984 606 Locate
trnT-UGU gene − 46410 46482 73 Locate
trnL-UAA gene + 47169 47712 544 Locate
trnF-GAA gene + 48006 48078 73 Locate
ndhJ gene − 48746 49222 477 Locate
ndhK gene − 49333 50010 678 Locate
ndhC gene − 50062 50424 363 Locate
trnV-UAC gene − 51381 52036 656 Locate
trnM-CAU gene + 52217 52289 73 Locate
atpE gene − 52490 52891 402 Locate
atpB gene − 52888 54384 1497 Locate
rbcL gene + 55175 56608 1434 Locate
accD gene + 57309 58790 1482 Locate
psaI gene + 59492 59602 111 Locate
ycf4 gene + 60049 60603 555 Locate
cemA gene + 61194 61883 690 Locate
petA gene + 62098 63060 963 Locate
psbJ gene − 64100 64222 123 Locate
psbL gene − 64357 64473 117 Locate
psbF gene − 64497 64616 120 Locate
psbE gene − 64631 64882 252 Locate
petL gene + 65775 65870 96 Locate
petG gene + 66045 66158 114 Locate
trnW-CCA gene − 66281 66354 74 Locate
trnP-UGG gene − 66523 66596 74 Locate
psaJ gene + 66878 67012 135 Locate
rpl33 gene + 67472 67672 201 Locate
rps18 gene + 67839 68144 306 Locate
rpl20 gene − 68380 68766 387 Locate
rps12 gene − 69500 69613 114 Locate
clpP gene − 69732 71648 1917 Locate
psbB gene + 72121 73647 1527 Locate
psbT gene + 73832 73933 102 Locate
psbN gene − 73999 74130 132 Locate
psbH gene + 74236 74454 219 Locate
petB gene + 74580 75947 1368 Locate
petD gene + 76136 77328 1193 Locate
rpoA gene − 77505 78512 1008 Locate
rps11 gene − 78584 79000 417 Locate
rpl36 gene − 79116 79229 114 Locate
infA gene − 79325 79558 234 Locate
rps8 gene − 79684 80088 405 Locate
rpl14 gene − 80271 80639 369 Locate
rpl16 gene − 80772 82039 1268 Locate
rps3 gene − 82183 82845 663 Locate
rpl22 gene − 82830 83303 474 Locate
rps19 gene − 83368 83646 279 Locate
rpl2 gene − 83714 85192 1479 Locate
rpl23 gene − 85211 85492 282 Locate
trnI-CAU gene − 85658 85731 74 Locate
ycf2 gene + 85826 92656 6831 Locate
ycf15 gene + 92846 92995 150 Locate
trnL-CAA gene − 93256 93336 81 Locate
ndhB gene − 93908 96115 2208 Locate
rps7 gene − 96386 96853 468 Locate
rps12 gene − 96907 97699 793 Locate
trnV-GAC gene + 99361 99432 72 Locate
rrn16 gene + 99659 101149 1491 Locate
trnI-GAU gene + 101447 102464 1018 Locate
trnA-UGC gene + 102529 103407 879 Locate
rrn23 gene + 103579 106389 2811 Locate
rrn4.5 gene + 106488 106590 103 Locate
rrn5 gene + 106846 106966 121 Locate
trnR-ACG gene + 107210 107283 74 Locate
trnN-GUU gene − 107850 107921 72 Locate
ycf1 gene + 108263 109393 1131 Locate
ndhF gene − 109287 111518 2232 Locate
rpl32 gene + 111987 112157 171 Locate
trnL-UAG gene + 112922 113001 80 Locate
ccsA gene + 113090 114061 972 Locate
ndhD gene − 114293 115822 1530 Locate
psaC gene − 115913 116158 246 Locate
ndhE gene − 116414 116719 306 Locate
ndhG gene − 116934 117464 531 Locate
ndhI gene − 117824 118330 507 Locate
ndhA gene − 118411 120533 2123 Locate
ndhH gene − 120535 121716 1182 Locate
rps15 gene − 121831 122103 273 Locate
ycf1 gene − 122533 128055 5523 Locate
trnN-GUU gene + 128397 128468 72 Locate
trnR-ACG gene − 129035 129108 74 Locate
rrn5 gene − 129352 129472 121 Locate
rrn4.5 gene − 129728 129830 103 Locate
rrn23 gene − 129929 132739 2811 Locate
trnA-UGC gene − 132911 133789 879 Locate
trnI-GAU gene − 133854 134871 1018 Locate
rrn16 gene − 135169 136659 1491 Locate
trnV-GAC gene − 136886 136957 72 Locate
rps12 gene + 138619 139411 793 Locate
rps7 gene + 139465 139932 468 Locate
ndhB gene + 140203 142410 2208 Locate
trnL-CAA gene + 142982 143062 81 Locate
ycf15 gene − 143323 143472 150 Locate
ycf2 gene − 143662 150492 6831 Locate
trnI-CAU gene + 150587 150660 74 Locate
rpl23 gene + 150826 151107 282 Locate
rpl2 gene + 151126 152604 1479 Locate
Status Available
Accession NC_067646.1
Length 152,714 bp
GC content 37.6%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 16 Atp Synthase 6 Ribosomal Protein 25 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources