Isodon coetsoides chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · NC_067653.1 · 11–85 bp · −
psbA · NC_067653.1 · 402–1,460 bp · −
trnK-UUU · NC_067653.1 · 1,692–4,265 bp · −
matK · NC_067653.1 · 2,004–3,524 bp · −
OOB08_pgp086 · NC_067653.1 · 4,793–5,931 bp · −
trnQ-UUG · NC_067653.1 · 6,886–6,957 bp · −
trnS-GCU · NC_067653.1 · 8,192–8,279 bp · −
atpA · NC_067653.1 · 10,148–11,671 bp · −
atpF · NC_067653.1 · 11,779–13,023 bp · −
atpH · NC_067653.1 · 13,315–13,560 bp · −
atpI · NC_067653.1 · 14,561–15,304 bp · −
rps2 · NC_067653.1 · 15,530–16,240 bp · −
rpoC2 · NC_067653.1 · 16,454–20,635 bp · −
rpoC1 · NC_067653.1 · 20,794–23,627 bp · −
rpoB · NC_067653.1 · 23,654–26,866 bp · −
psbM · NC_067653.1 · 29,365–29,469 bp · −
trnD-GUC · NC_067653.1 · 29,988–30,061 bp · −
trnY-GUA · NC_067653.1 · 30,172–30,255 bp · −
trnE-UUC · NC_067653.1 · 30,333–30,405 bp · −
trnS-UGA · NC_067653.1 · 35,064–35,156 bp · −
trnfM-CAU · NC_067653.1 · 36,193–36,266 bp · −
rps14 · NC_067653.1 · 36,412–36,714 bp · −
psaB · NC_067653.1 · 36,837–39,041 bp · −
psaA · NC_067653.1 · 39,067–41,319 bp · −
ycf3 · NC_067653.1 · 42,113–44,060 bp · −
rps4 · NC_067653.1 · 45,307–45,912 bp · −
trnT-UGU · NC_067653.1 · 46,347–46,419 bp · −
ndhJ · NC_067653.1 · 48,704–49,180 bp · −
ndhK · NC_067653.1 · 49,291–49,968 bp · −
ndhC · NC_067653.1 · 50,020–50,382 bp · −
trnV-UAC · NC_067653.1 · 51,339–51,992 bp · −
atpE · NC_067653.1 · 52,446–52,847 bp · −
atpB · NC_067653.1 · 52,844–54,340 bp · −
psbJ · NC_067653.1 · 64,049–64,171 bp · −
psbL · NC_067653.1 · 64,306–64,422 bp · −
psbF · NC_067653.1 · 64,446–64,565 bp · −
psbE · NC_067653.1 · 64,580–64,831 bp · −
trnW-CCA · NC_067653.1 · 66,230–66,303 bp · −
trnP-UGG · NC_067653.1 · 66,472–66,545 bp · −
rpl20 · NC_067653.1 · 68,328–68,714 bp · −
rps12 · NC_067653.1 · 69,447–69,560 bp · −
rps12 · NC_067653.1 · 96,849–97,642 bp · −
clpP · NC_067653.1 · 69,678–71,597 bp · −
psbN · NC_067653.1 · 73,946–74,077 bp · −
rpoA · NC_067653.1 · 77,448–78,455 bp · −
rps11 · NC_067653.1 · 78,527–78,943 bp · −
rpl36 · NC_067653.1 · 79,059–79,172 bp · −
infA · NC_067653.1 · 79,268–79,501 bp · −
rps8 · NC_067653.1 · 79,629–80,033 bp · −
rpl14 · NC_067653.1 · 80,216–80,584 bp · −
rpl16 · NC_067653.1 · 80,718–81,985 bp · −
rps3 · NC_067653.1 · 82,129–82,791 bp · −
rpl22 · NC_067653.1 · 82,776–83,249 bp · −
rps19 · NC_067653.1 · 83,314–83,592 bp · −
rpl2 · NC_067653.1 · 83,662–85,140 bp · −
rpl23 · NC_067653.1 · 85,159–85,440 bp · −
trnI-CAU · NC_067653.1 · 85,606–85,679 bp · −
trnL-CAA · NC_067653.1 · 93,198–93,278 bp · −
ndhB · NC_067653.1 · 93,850–96,057 bp · −
rps7 · NC_067653.1 · 96,328–96,795 bp · −
trnN-GUU · NC_067653.1 · 107,799–107,870 bp · −
ndhF · NC_067653.1 · 109,236–111,467 bp · −
ndhD · NC_067653.1 · 114,250–115,779 bp · −
psaC · NC_067653.1 · 115,870–116,115 bp · −
ndhE · NC_067653.1 · 116,371–116,676 bp · −
ndhG · NC_067653.1 · 116,891–117,421 bp · −
ndhI · NC_067653.1 · 117,783–118,289 bp · −
ndhA · NC_067653.1 · 118,370–120,484 bp · −
ndhH · NC_067653.1 · 120,486–121,667 bp · −
rps15 · NC_067653.1 · 121,782–122,054 bp · −
ycf1 · NC_067653.1 · 122,484–128,030 bp · −
trnR-ACG · NC_067653.1 · 129,015–129,088 bp · −
rrn5 · NC_067653.1 · 129,332–129,452 bp · −
rrn4.5 · NC_067653.1 · 129,708–129,810 bp · −
rrn23 · NC_067653.1 · 129,909–132,719 bp · −
trnA-UGC · NC_067653.1 · 132,891–133,769 bp · −
trnI-GAU · NC_067653.1 · 133,834–134,852 bp · −
rrn16 · NC_067653.1 · 135,150–136,640 bp · −
trnV-GAC · NC_067653.1 · 136,867–136,938 bp · −
ycf15 · NC_067653.1 · 143,305–143,454 bp · −
ycf2 · NC_067653.1 · 143,644–150,474 bp · −
psbK · NC_067653.1 · 7,351–7,536 bp · +
psbI · NC_067653.1 · 7,925–8,035 bp · +
trnG-UCC · NC_067653.1 · 9,023–9,782 bp · +
trnR-UCU · NC_067653.1 · 9,973–10,044 bp · +
trnC-GCA · NC_067653.1 · 28,055–28,125 bp · +
petN · NC_067653.1 · 28,288–28,377 bp · +
trnT-GGU · NC_067653.1 · 31,009–31,080 bp · +
psbD · NC_067653.1 · 32,398–33,459 bp · +
psbC · NC_067653.1 · 33,407–34,828 bp · +
psbZ · NC_067653.1 · 35,497–35,685 bp · +
trnG-GCC · NC_067653.1 · 35,930–36,000 bp · +
trnS-GGA · NC_067653.1 · 44,924–45,010 bp · +
trnL-UAA · NC_067653.1 · 47,104–47,669 bp · +
trnF-GAA · NC_067653.1 · 47,963–48,035 bp · +
trnM-CAU · NC_067653.1 · 52,173–52,245 bp · +
rbcL · NC_067653.1 · 55,131–56,564 bp · +
accD · NC_067653.1 · 57,261–58,742 bp · +
psaI · NC_067653.1 · 59,444–59,554 bp · +
ycf4 · NC_067653.1 · 60,001–60,555 bp · +
cemA · NC_067653.1 · 61,145–61,834 bp · +
petA · NC_067653.1 · 62,049–63,011 bp · +
petL · NC_067653.1 · 65,724–65,819 bp · +
petG · NC_067653.1 · 65,994–66,107 bp · +
psaJ · NC_067653.1 · 66,825–66,959 bp · +
rpl33 · NC_067653.1 · 67,419–67,619 bp · +
rps18 · NC_067653.1 · 67,786–68,091 bp · +
rps12 · NC_067653.1 · 138,600–139,393 bp · +
psbB · NC_067653.1 · 72,070–73,596 bp · +
psbT · NC_067653.1 · 73,779–73,880 bp · +
psbH · NC_067653.1 · 74,183–74,401 bp · +
petB · NC_067653.1 · 74,527–75,890 bp · +
petD · NC_067653.1 · 76,079–77,271 bp · +
ycf2 · NC_067653.1 · 85,768–92,598 bp · +
ycf15 · NC_067653.1 · 92,788–92,937 bp · +
trnV-GAC · NC_067653.1 · 99,304–99,375 bp · +
rrn16 · NC_067653.1 · 99,602–101,092 bp · +
trnI-GAU · NC_067653.1 · 101,390–102,408 bp · +
trnA-UGC · NC_067653.1 · 102,473–103,351 bp · +
rrn23 · NC_067653.1 · 103,523–106,333 bp · +
rrn4.5 · NC_067653.1 · 106,432–106,534 bp · +
rrn5 · NC_067653.1 · 106,790–106,910 bp · +
trnR-ACG · NC_067653.1 · 107,154–107,227 bp · +
ycf1 · NC_067653.1 · 108,212–109,342 bp · +
rpl32 · NC_067653.1 · 111,951–112,121 bp · +
trnL-UAG · NC_067653.1 · 112,879–112,958 bp · +
ccsA · NC_067653.1 · 113,047–114,018 bp · +
trnN-GUU · NC_067653.1 · 128,372–128,443 bp · +
rps7 · NC_067653.1 · 139,447–139,914 bp · +
ndhB · NC_067653.1 · 140,185–142,392 bp · +
trnL-CAA · NC_067653.1 · 142,964–143,044 bp · +
trnI-CAU · NC_067653.1 · 150,563–150,636 bp · +
rpl23 · NC_067653.1 · 150,802–151,083 bp · +
rpl2 · NC_067653.1 · 151,102–152,580 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Isodon coetsoides
ANNOTATED PLASTOME
NC_067653.1
152,692 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
ATP synthase
Ribosomal protein
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38173 76346 114519 152692 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK OOB08_pgp086 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 11 85 75 Locate
psbA gene − 402 1460 1059 Locate
trnK-UUU gene − 1692 4265 2574 Locate
matK gene − 2004 3524 1521 Locate
OOB08_pgp086 gene − 4793 5931 1139 Locate
trnQ-UUG gene − 6886 6957 72 Locate
psbK gene + 7351 7536 186 Locate
psbI gene + 7925 8035 111 Locate
trnS-GCU gene − 8192 8279 88 Locate
trnG-UCC gene + 9023 9782 760 Locate
trnR-UCU gene + 9973 10044 72 Locate
atpA gene − 10148 11671 1524 Locate
atpF gene − 11779 13023 1245 Locate
atpH gene − 13315 13560 246 Locate
atpI gene − 14561 15304 744 Locate
rps2 gene − 15530 16240 711 Locate
rpoC2 gene − 16454 20635 4182 Locate
rpoC1 gene − 20794 23627 2834 Locate
rpoB gene − 23654 26866 3213 Locate
trnC-GCA gene + 28055 28125 71 Locate
petN gene + 28288 28377 90 Locate
psbM gene − 29365 29469 105 Locate
trnD-GUC gene − 29988 30061 74 Locate
trnY-GUA gene − 30172 30255 84 Locate
trnE-UUC gene − 30333 30405 73 Locate
trnT-GGU gene + 31009 31080 72 Locate
psbD gene + 32398 33459 1062 Locate
psbC gene + 33407 34828 1422 Locate
trnS-UGA gene − 35064 35156 93 Locate
psbZ gene + 35497 35685 189 Locate
trnG-GCC gene + 35930 36000 71 Locate
trnfM-CAU gene − 36193 36266 74 Locate
rps14 gene − 36412 36714 303 Locate
psaB gene − 36837 39041 2205 Locate
psaA gene − 39067 41319 2253 Locate
ycf3 gene − 42113 44060 1948 Locate
trnS-GGA gene + 44924 45010 87 Locate
rps4 gene − 45307 45912 606 Locate
trnT-UGU gene − 46347 46419 73 Locate
trnL-UAA gene + 47104 47669 566 Locate
trnF-GAA gene + 47963 48035 73 Locate
ndhJ gene − 48704 49180 477 Locate
ndhK gene − 49291 49968 678 Locate
ndhC gene − 50020 50382 363 Locate
trnV-UAC gene − 51339 51992 654 Locate
trnM-CAU gene + 52173 52245 73 Locate
atpE gene − 52446 52847 402 Locate
atpB gene − 52844 54340 1497 Locate
rbcL gene + 55131 56564 1434 Locate
accD gene + 57261 58742 1482 Locate
psaI gene + 59444 59554 111 Locate
ycf4 gene + 60001 60555 555 Locate
cemA gene + 61145 61834 690 Locate
petA gene + 62049 63011 963 Locate
psbJ gene − 64049 64171 123 Locate
psbL gene − 64306 64422 117 Locate
psbF gene − 64446 64565 120 Locate
psbE gene − 64580 64831 252 Locate
petL gene + 65724 65819 96 Locate
petG gene + 65994 66107 114 Locate
trnW-CCA gene − 66230 66303 74 Locate
trnP-UGG gene − 66472 66545 74 Locate
psaJ gene + 66825 66959 135 Locate
rpl33 gene + 67419 67619 201 Locate
rps18 gene + 67786 68091 306 Locate
rpl20 gene − 68328 68714 387 Locate
rps12 gene − 69447 69560 114 Locate
clpP gene − 69678 71597 1920 Locate
psbB gene + 72070 73596 1527 Locate
psbT gene + 73779 73880 102 Locate
psbN gene − 73946 74077 132 Locate
psbH gene + 74183 74401 219 Locate
petB gene + 74527 75890 1364 Locate
petD gene + 76079 77271 1193 Locate
rpoA gene − 77448 78455 1008 Locate
rps11 gene − 78527 78943 417 Locate
rpl36 gene − 79059 79172 114 Locate
infA gene − 79268 79501 234 Locate
rps8 gene − 79629 80033 405 Locate
rpl14 gene − 80216 80584 369 Locate
rpl16 gene − 80718 81985 1268 Locate
rps3 gene − 82129 82791 663 Locate
rpl22 gene − 82776 83249 474 Locate
rps19 gene − 83314 83592 279 Locate
rpl2 gene − 83662 85140 1479 Locate
rpl23 gene − 85159 85440 282 Locate
trnI-CAU gene − 85606 85679 74 Locate
ycf2 gene + 85768 92598 6831 Locate
ycf15 gene + 92788 92937 150 Locate
trnL-CAA gene − 93198 93278 81 Locate
ndhB gene − 93850 96057 2208 Locate
rps7 gene − 96328 96795 468 Locate
rps12 gene − 96849 97642 794 Locate
trnV-GAC gene + 99304 99375 72 Locate
rrn16 gene + 99602 101092 1491 Locate
trnI-GAU gene + 101390 102408 1019 Locate
trnA-UGC gene + 102473 103351 879 Locate
rrn23 gene + 103523 106333 2811 Locate
rrn4.5 gene + 106432 106534 103 Locate
rrn5 gene + 106790 106910 121 Locate
trnR-ACG gene + 107154 107227 74 Locate
trnN-GUU gene − 107799 107870 72 Locate
ycf1 gene + 108212 109342 1131 Locate
ndhF gene − 109236 111467 2232 Locate
rpl32 gene + 111951 112121 171 Locate
trnL-UAG gene + 112879 112958 80 Locate
ccsA gene + 113047 114018 972 Locate
ndhD gene − 114250 115779 1530 Locate
psaC gene − 115870 116115 246 Locate
ndhE gene − 116371 116676 306 Locate
ndhG gene − 116891 117421 531 Locate
ndhI gene − 117783 118289 507 Locate
ndhA gene − 118370 120484 2115 Locate
ndhH gene − 120486 121667 1182 Locate
rps15 gene − 121782 122054 273 Locate
ycf1 gene − 122484 128030 5547 Locate
trnN-GUU gene + 128372 128443 72 Locate
trnR-ACG gene − 129015 129088 74 Locate
rrn5 gene − 129332 129452 121 Locate
rrn4.5 gene − 129708 129810 103 Locate
rrn23 gene − 129909 132719 2811 Locate
trnA-UGC gene − 132891 133769 879 Locate
trnI-GAU gene − 133834 134852 1019 Locate
rrn16 gene − 135150 136640 1491 Locate
trnV-GAC gene − 136867 136938 72 Locate
rps12 gene + 138600 139393 794 Locate
rps7 gene + 139447 139914 468 Locate
ndhB gene + 140185 142392 2208 Locate
trnL-CAA gene + 142964 143044 81 Locate
ycf15 gene − 143305 143454 150 Locate
ycf2 gene − 143644 150474 6831 Locate
trnI-CAU gene + 150563 150636 74 Locate
rpl23 gene + 150802 151083 282 Locate
rpl2 gene + 151102 152580 1479 Locate
Status Available
Accession NC_067653.1
Length 152,692 bp
GC content 37.6%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 16 Atp Synthase 6 Ribosomal Protein 25 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources