Isodon dawoensis chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · NC_067654.1 · 11–85 bp · −
psbA · NC_067654.1 · 393–1,451 bp · −
trnK-UUU · NC_067654.1 · 1,683–4,263 bp · −
matK · NC_067654.1 · 2,003–3,523 bp · −
OOC86_pgp086 · NC_067654.1 · 4,789–5,934 bp · −
trnQ-UUG · NC_067654.1 · 6,880–6,951 bp · −
trnS-GCU · NC_067654.1 · 8,191–8,278 bp · −
atpA · NC_067654.1 · 10,164–11,687 bp · −
atpF · NC_067654.1 · 11,797–13,042 bp · −
atpH · NC_067654.1 · 13,334–13,579 bp · −
atpI · NC_067654.1 · 14,580–15,323 bp · −
rps2 · NC_067654.1 · 15,549–16,259 bp · −
rpoC2 · NC_067654.1 · 16,478–20,659 bp · −
rpoC1 · NC_067654.1 · 20,824–23,657 bp · −
rpoB · NC_067654.1 · 23,684–26,896 bp · −
psbM · NC_067654.1 · 29,414–29,518 bp · −
trnD-GUC · NC_067654.1 · 30,037–30,110 bp · −
trnY-GUA · NC_067654.1 · 30,221–30,304 bp · −
trnE-UUC · NC_067654.1 · 30,382–30,454 bp · −
trnS-UGA · NC_067654.1 · 35,121–35,213 bp · −
trnfM-CAU · NC_067654.1 · 36,248–36,321 bp · −
rps14 · NC_067654.1 · 36,467–36,769 bp · −
psaB · NC_067654.1 · 36,892–39,096 bp · −
psaA · NC_067654.1 · 39,122–41,374 bp · −
ycf3 · NC_067654.1 · 42,142–44,088 bp · −
rps4 · NC_067654.1 · 45,335–45,940 bp · −
trnT-UGU · NC_067654.1 · 46,366–46,438 bp · −
ndhJ · NC_067654.1 · 48,724–49,200 bp · −
ndhK · NC_067654.1 · 49,311–49,988 bp · −
ndhC · NC_067654.1 · 50,040–50,402 bp · −
trnV-UAC · NC_067654.1 · 51,359–52,014 bp · −
atpE · NC_067654.1 · 52,468–52,869 bp · −
atpB · NC_067654.1 · 52,866–54,362 bp · −
psbJ · NC_067654.1 · 64,079–64,201 bp · −
psbL · NC_067654.1 · 64,336–64,452 bp · −
psbF · NC_067654.1 · 64,476–64,595 bp · −
psbE · NC_067654.1 · 64,610–64,861 bp · −
trnW-CCA · NC_067654.1 · 66,260–66,333 bp · −
trnP-UGG · NC_067654.1 · 66,502–66,575 bp · −
rpl20 · NC_067654.1 · 68,353–68,739 bp · −
rps12 · NC_067654.1 · 69,475–69,588 bp · −
rps12 · NC_067654.1 · 96,904–97,696 bp · −
clpP · NC_067654.1 · 69,707–71,628 bp · −
psbN · NC_067654.1 · 73,994–74,125 bp · −
rpoA · NC_067654.1 · 77,499–78,506 bp · −
rps11 · NC_067654.1 · 78,578–78,994 bp · −
rpl36 · NC_067654.1 · 79,110–79,223 bp · −
infA · NC_067654.1 · 79,319–79,552 bp · −
rps8 · NC_067654.1 · 79,679–80,083 bp · −
rpl14 · NC_067654.1 · 80,266–80,634 bp · −
rpl16 · NC_067654.1 · 80,768–82,035 bp · −
rps3 · NC_067654.1 · 82,179–82,841 bp · −
rpl22 · NC_067654.1 · 82,826–83,299 bp · −
rps19 · NC_067654.1 · 83,364–83,642 bp · −
rpl2 · NC_067654.1 · 83,711–85,189 bp · −
rpl23 · NC_067654.1 · 85,208–85,489 bp · −
trnI-CAU · NC_067654.1 · 85,655–85,728 bp · −
trnL-CAA · NC_067654.1 · 93,253–93,333 bp · −
ndhB · NC_067654.1 · 93,905–96,112 bp · −
rps7 · NC_067654.1 · 96,383–96,850 bp · −
trnN-GUU · NC_067654.1 · 107,848–107,919 bp · −
ndhF · NC_067654.1 · 109,285–111,516 bp · −
ndhD · NC_067654.1 · 114,290–115,819 bp · −
psaC · NC_067654.1 · 115,910–116,155 bp · −
ndhE · NC_067654.1 · 116,411–116,716 bp · −
ndhG · NC_067654.1 · 116,931–117,461 bp · −
ndhI · NC_067654.1 · 117,821–118,327 bp · −
ndhA · NC_067654.1 · 118,403–120,526 bp · −
ndhH · NC_067654.1 · 120,528–121,709 bp · −
rps15 · NC_067654.1 · 121,824–122,096 bp · −
ycf1 · NC_067654.1 · 122,526–128,048 bp · −
trnR-ACG · NC_067654.1 · 129,028–129,101 bp · −
rrn5 · NC_067654.1 · 129,345–129,465 bp · −
rrn4.5 · NC_067654.1 · 129,721–129,823 bp · −
rrn23 · NC_067654.1 · 129,922–132,732 bp · −
trnA-UGC · NC_067654.1 · 132,904–133,782 bp · −
trnI-GAU · NC_067654.1 · 133,847–134,865 bp · −
rrn16 · NC_067654.1 · 135,163–136,653 bp · −
trnV-GAC · NC_067654.1 · 136,880–136,951 bp · −
ycf15 · NC_067654.1 · 143,317–143,466 bp · −
ycf2 · NC_067654.1 · 143,656–150,486 bp · −
psbK · NC_067654.1 · 7,345–7,530 bp · +
psbI · NC_067654.1 · 7,925–8,035 bp · +
trnG-UCC · NC_067654.1 · 9,040–9,798 bp · +
trnR-UCU · NC_067654.1 · 9,989–10,060 bp · +
trnC-GCA · NC_067654.1 · 28,091–28,161 bp · +
petN · NC_067654.1 · 28,324–28,413 bp · +
trnT-GGU · NC_067654.1 · 31,064–31,135 bp · +
psbD · NC_067654.1 · 32,454–33,515 bp · +
psbC · NC_067654.1 · 33,463–34,884 bp · +
psbZ · NC_067654.1 · 35,554–35,742 bp · +
trnG-GCC · NC_067654.1 · 35,987–36,057 bp · +
trnS-GGA · NC_067654.1 · 44,952–45,038 bp · +
trnL-UAA · NC_067654.1 · 47,125–47,690 bp · +
trnF-GAA · NC_067654.1 · 47,984–48,056 bp · +
trnM-CAU · NC_067654.1 · 52,195–52,267 bp · +
rbcL · NC_067654.1 · 55,153–56,586 bp · +
accD · NC_067654.1 · 57,291–58,772 bp · +
psaI · NC_067654.1 · 59,473–59,583 bp · +
ycf4 · NC_067654.1 · 60,030–60,584 bp · +
cemA · NC_067654.1 · 61,175–61,864 bp · +
petA · NC_067654.1 · 62,079–63,041 bp · +
petL · NC_067654.1 · 65,754–65,849 bp · +
petG · NC_067654.1 · 66,024–66,137 bp · +
psaJ · NC_067654.1 · 66,857–66,991 bp · +
rpl33 · NC_067654.1 · 67,446–67,646 bp · +
rps18 · NC_067654.1 · 67,813–68,118 bp · +
rps12 · NC_067654.1 · 138,613–139,405 bp · +
psbB · NC_067654.1 · 72,116–73,642 bp · +
psbT · NC_067654.1 · 73,827–73,928 bp · +
psbH · NC_067654.1 · 74,231–74,449 bp · +
petB · NC_067654.1 · 74,575–75,941 bp · +
petD · NC_067654.1 · 76,130–77,322 bp · +
ycf2 · NC_067654.1 · 85,823–92,653 bp · +
ycf15 · NC_067654.1 · 92,843–92,992 bp · +
trnV-GAC · NC_067654.1 · 99,358–99,429 bp · +
rrn16 · NC_067654.1 · 99,656–101,146 bp · +
trnI-GAU · NC_067654.1 · 101,444–102,462 bp · +
trnA-UGC · NC_067654.1 · 102,527–103,405 bp · +
rrn23 · NC_067654.1 · 103,577–106,387 bp · +
rrn4.5 · NC_067654.1 · 106,486–106,588 bp · +
rrn5 · NC_067654.1 · 106,844–106,964 bp · +
trnR-ACG · NC_067654.1 · 107,208–107,281 bp · +
ycf1 · NC_067654.1 · 108,261–109,391 bp · +
rpl32 · NC_067654.1 · 111,985–112,155 bp · +
trnL-UAG · NC_067654.1 · 112,920–112,999 bp · +
ccsA · NC_067654.1 · 113,088–114,059 bp · +
trnN-GUU · NC_067654.1 · 128,390–128,461 bp · +
rps7 · NC_067654.1 · 139,459–139,926 bp · +
ndhB · NC_067654.1 · 140,197–142,404 bp · +
trnL-CAA · NC_067654.1 · 142,976–143,056 bp · +
trnI-CAU · NC_067654.1 · 150,581–150,654 bp · +
rpl23 · NC_067654.1 · 150,820–151,101 bp · +
rpl2 · NC_067654.1 · 151,120–152,598 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Isodon dawoensis
ANNOTATED PLASTOME
NC_067654.1
152,709 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
ATP synthase
Ribosomal protein
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38177 76354 114532 152709 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK OOC86_pgp086 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 11 85 75 Locate
psbA gene − 393 1451 1059 Locate
trnK-UUU gene − 1683 4263 2581 Locate
matK gene − 2003 3523 1521 Locate
OOC86_pgp086 gene − 4789 5934 1146 Locate
trnQ-UUG gene − 6880 6951 72 Locate
psbK gene + 7345 7530 186 Locate
psbI gene + 7925 8035 111 Locate
trnS-GCU gene − 8191 8278 88 Locate
trnG-UCC gene + 9040 9798 759 Locate
trnR-UCU gene + 9989 10060 72 Locate
atpA gene − 10164 11687 1524 Locate
atpF gene − 11797 13042 1246 Locate
atpH gene − 13334 13579 246 Locate
atpI gene − 14580 15323 744 Locate
rps2 gene − 15549 16259 711 Locate
rpoC2 gene − 16478 20659 4182 Locate
rpoC1 gene − 20824 23657 2834 Locate
rpoB gene − 23684 26896 3213 Locate
trnC-GCA gene + 28091 28161 71 Locate
petN gene + 28324 28413 90 Locate
psbM gene − 29414 29518 105 Locate
trnD-GUC gene − 30037 30110 74 Locate
trnY-GUA gene − 30221 30304 84 Locate
trnE-UUC gene − 30382 30454 73 Locate
trnT-GGU gene + 31064 31135 72 Locate
psbD gene + 32454 33515 1062 Locate
psbC gene + 33463 34884 1422 Locate
trnS-UGA gene − 35121 35213 93 Locate
psbZ gene + 35554 35742 189 Locate
trnG-GCC gene + 35987 36057 71 Locate
trnfM-CAU gene − 36248 36321 74 Locate
rps14 gene − 36467 36769 303 Locate
psaB gene − 36892 39096 2205 Locate
psaA gene − 39122 41374 2253 Locate
ycf3 gene − 42142 44088 1947 Locate
trnS-GGA gene + 44952 45038 87 Locate
rps4 gene − 45335 45940 606 Locate
trnT-UGU gene − 46366 46438 73 Locate
trnL-UAA gene + 47125 47690 566 Locate
trnF-GAA gene + 47984 48056 73 Locate
ndhJ gene − 48724 49200 477 Locate
ndhK gene − 49311 49988 678 Locate
ndhC gene − 50040 50402 363 Locate
trnV-UAC gene − 51359 52014 656 Locate
trnM-CAU gene + 52195 52267 73 Locate
atpE gene − 52468 52869 402 Locate
atpB gene − 52866 54362 1497 Locate
rbcL gene + 55153 56586 1434 Locate
accD gene + 57291 58772 1482 Locate
psaI gene + 59473 59583 111 Locate
ycf4 gene + 60030 60584 555 Locate
cemA gene + 61175 61864 690 Locate
petA gene + 62079 63041 963 Locate
psbJ gene − 64079 64201 123 Locate
psbL gene − 64336 64452 117 Locate
psbF gene − 64476 64595 120 Locate
psbE gene − 64610 64861 252 Locate
petL gene + 65754 65849 96 Locate
petG gene + 66024 66137 114 Locate
trnW-CCA gene − 66260 66333 74 Locate
trnP-UGG gene − 66502 66575 74 Locate
psaJ gene + 66857 66991 135 Locate
rpl33 gene + 67446 67646 201 Locate
rps18 gene + 67813 68118 306 Locate
rpl20 gene − 68353 68739 387 Locate
rps12 gene − 69475 69588 114 Locate
clpP gene − 69707 71628 1922 Locate
psbB gene + 72116 73642 1527 Locate
psbT gene + 73827 73928 102 Locate
psbN gene − 73994 74125 132 Locate
psbH gene + 74231 74449 219 Locate
petB gene + 74575 75941 1367 Locate
petD gene + 76130 77322 1193 Locate
rpoA gene − 77499 78506 1008 Locate
rps11 gene − 78578 78994 417 Locate
rpl36 gene − 79110 79223 114 Locate
infA gene − 79319 79552 234 Locate
rps8 gene − 79679 80083 405 Locate
rpl14 gene − 80266 80634 369 Locate
rpl16 gene − 80768 82035 1268 Locate
rps3 gene − 82179 82841 663 Locate
rpl22 gene − 82826 83299 474 Locate
rps19 gene − 83364 83642 279 Locate
rpl2 gene − 83711 85189 1479 Locate
rpl23 gene − 85208 85489 282 Locate
trnI-CAU gene − 85655 85728 74 Locate
ycf2 gene + 85823 92653 6831 Locate
ycf15 gene + 92843 92992 150 Locate
trnL-CAA gene − 93253 93333 81 Locate
ndhB gene − 93905 96112 2208 Locate
rps7 gene − 96383 96850 468 Locate
rps12 gene − 96904 97696 793 Locate
trnV-GAC gene + 99358 99429 72 Locate
rrn16 gene + 99656 101146 1491 Locate
trnI-GAU gene + 101444 102462 1019 Locate
trnA-UGC gene + 102527 103405 879 Locate
rrn23 gene + 103577 106387 2811 Locate
rrn4.5 gene + 106486 106588 103 Locate
rrn5 gene + 106844 106964 121 Locate
trnR-ACG gene + 107208 107281 74 Locate
trnN-GUU gene − 107848 107919 72 Locate
ycf1 gene + 108261 109391 1131 Locate
ndhF gene − 109285 111516 2232 Locate
rpl32 gene + 111985 112155 171 Locate
trnL-UAG gene + 112920 112999 80 Locate
ccsA gene + 113088 114059 972 Locate
ndhD gene − 114290 115819 1530 Locate
psaC gene − 115910 116155 246 Locate
ndhE gene − 116411 116716 306 Locate
ndhG gene − 116931 117461 531 Locate
ndhI gene − 117821 118327 507 Locate
ndhA gene − 118403 120526 2124 Locate
ndhH gene − 120528 121709 1182 Locate
rps15 gene − 121824 122096 273 Locate
ycf1 gene − 122526 128048 5523 Locate
trnN-GUU gene + 128390 128461 72 Locate
trnR-ACG gene − 129028 129101 74 Locate
rrn5 gene − 129345 129465 121 Locate
rrn4.5 gene − 129721 129823 103 Locate
rrn23 gene − 129922 132732 2811 Locate
trnA-UGC gene − 132904 133782 879 Locate
trnI-GAU gene − 133847 134865 1019 Locate
rrn16 gene − 135163 136653 1491 Locate
trnV-GAC gene − 136880 136951 72 Locate
rps12 gene + 138613 139405 793 Locate
rps7 gene + 139459 139926 468 Locate
ndhB gene + 140197 142404 2208 Locate
trnL-CAA gene + 142976 143056 81 Locate
ycf15 gene − 143317 143466 150 Locate
ycf2 gene − 143656 150486 6831 Locate
trnI-CAU gene + 150581 150654 74 Locate
rpl23 gene + 150820 151101 282 Locate
rpl2 gene + 151120 152598 1479 Locate
Status Available
Accession NC_067654.1
Length 152,709 bp
GC content 37.6%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 16 Atp Synthase 6 Ribosomal Protein 25 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources