Isodon excisoides chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · NC_067657.1 · 11–85 bp · −
psbA · NC_067657.1 · 393–1,451 bp · −
trnK-UUU · NC_067657.1 · 1,683–4,258 bp · −
matK · NC_067657.1 · 2,003–3,523 bp · −
OOC83_pgp086 · NC_067657.1 · 4,786–5,931 bp · −
trnQ-UUG · NC_067657.1 · 6,872–6,943 bp · −
trnS-GCU · NC_067657.1 · 8,176–8,263 bp · −
atpA · NC_067657.1 · 10,155–11,678 bp · −
atpF · NC_067657.1 · 11,783–13,028 bp · −
atpH · NC_067657.1 · 13,320–13,565 bp · −
atpI · NC_067657.1 · 14,566–15,309 bp · −
rps2 · NC_067657.1 · 15,535–16,245 bp · −
rpoC2 · NC_067657.1 · 16,462–20,643 bp · −
rpoC1 · NC_067657.1 · 20,808–23,646 bp · −
rpoB · NC_067657.1 · 23,673–26,885 bp · −
psbM · NC_067657.1 · 29,389–29,493 bp · −
trnD-GUC · NC_067657.1 · 30,012–30,085 bp · −
trnY-GUA · NC_067657.1 · 30,196–30,279 bp · −
trnE-UUC · NC_067657.1 · 30,357–30,429 bp · −
trnS-UGA · NC_067657.1 · 35,096–35,188 bp · −
trnfM-CAU · NC_067657.1 · 36,223–36,296 bp · −
rps14 · NC_067657.1 · 36,442–36,744 bp · −
psaB · NC_067657.1 · 36,867–39,071 bp · −
psaA · NC_067657.1 · 39,097–41,349 bp · −
ycf3 · NC_067657.1 · 42,123–44,070 bp · −
rps4 · NC_067657.1 · 45,318–45,923 bp · −
trnT-UGU · NC_067657.1 · 46,348–46,420 bp · −
ndhJ · NC_067657.1 · 48,684–49,160 bp · −
ndhK · NC_067657.1 · 49,265–49,942 bp · −
ndhC · NC_067657.1 · 49,994–50,356 bp · −
trnV-UAC · NC_067657.1 · 51,313–51,968 bp · −
atpE · NC_067657.1 · 52,422–52,823 bp · −
atpB · NC_067657.1 · 52,820–54,316 bp · −
psbJ · NC_067657.1 · 64,032–64,154 bp · −
psbL · NC_067657.1 · 64,289–64,405 bp · −
psbF · NC_067657.1 · 64,429–64,548 bp · −
psbE · NC_067657.1 · 64,563–64,814 bp · −
trnW-CCA · NC_067657.1 · 66,204–66,277 bp · −
trnP-UGG · NC_067657.1 · 66,446–66,519 bp · −
rpl20 · NC_067657.1 · 68,303–68,689 bp · −
rps12 · NC_067657.1 · 69,424–69,537 bp · −
rps12 · NC_067657.1 · 96,835–97,627 bp · −
clpP · NC_067657.1 · 69,656–71,573 bp · −
psbN · NC_067657.1 · 73,924–74,055 bp · −
rpoA · NC_067657.1 · 77,423–78,430 bp · −
rps11 · NC_067657.1 · 78,502–78,918 bp · −
rpl36 · NC_067657.1 · 79,034–79,147 bp · −
infA · NC_067657.1 · 79,243–79,476 bp · −
rps8 · NC_067657.1 · 79,603–80,007 bp · −
rpl14 · NC_067657.1 · 80,198–80,566 bp · −
rpl16 · NC_067657.1 · 80,700–81,967 bp · −
rps3 · NC_067657.1 · 82,111–82,773 bp · −
rpl22 · NC_067657.1 · 82,758–83,231 bp · −
rps19 · NC_067657.1 · 83,296–83,574 bp · −
rpl2 · NC_067657.1 · 83,642–85,120 bp · −
rpl23 · NC_067657.1 · 85,139–85,420 bp · −
trnI-CAU · NC_067657.1 · 85,586–85,659 bp · −
trnL-CAA · NC_067657.1 · 93,184–93,264 bp · −
ndhB · NC_067657.1 · 93,836–96,043 bp · −
rps7 · NC_067657.1 · 96,314–96,781 bp · −
trnN-GUU · NC_067657.1 · 107,779–107,850 bp · −
ndhF · NC_067657.1 · 109,216–111,447 bp · −
ndhD · NC_067657.1 · 114,221–115,750 bp · −
psaC · NC_067657.1 · 115,841–116,086 bp · −
ndhE · NC_067657.1 · 116,342–116,647 bp · −
ndhG · NC_067657.1 · 116,862–117,392 bp · −
ndhI · NC_067657.1 · 117,754–118,260 bp · −
ndhA · NC_067657.1 · 118,341–120,464 bp · −
ndhH · NC_067657.1 · 120,466–121,647 bp · −
rps15 · NC_067657.1 · 121,762–122,034 bp · −
ycf1 · NC_067657.1 · 122,464–127,986 bp · −
trnR-ACG · NC_067657.1 · 128,966–129,039 bp · −
rrn5 · NC_067657.1 · 129,283–129,403 bp · −
rrn4.5 · NC_067657.1 · 129,659–129,761 bp · −
rrn23 · NC_067657.1 · 129,860–132,670 bp · −
trnA-UGC · NC_067657.1 · 132,842–133,720 bp · −
trnI-GAU · NC_067657.1 · 133,785–134,803 bp · −
rrn16 · NC_067657.1 · 135,101–136,591 bp · −
trnV-GAC · NC_067657.1 · 136,818–136,889 bp · −
ycf15 · NC_067657.1 · 143,255–143,404 bp · −
ycf2 · NC_067657.1 · 143,594–150,424 bp · −
psbK · NC_067657.1 · 7,337–7,522 bp · +
psbI · NC_067657.1 · 7,910–8,020 bp · +
trnG-UCC · NC_067657.1 · 9,029–9,789 bp · +
trnR-UCU · NC_067657.1 · 9,980–10,051 bp · +
trnC-GCA · NC_067657.1 · 28,075–28,145 bp · +
petN · NC_067657.1 · 28,308–28,397 bp · +
trnT-GGU · NC_067657.1 · 31,039–31,110 bp · +
psbD · NC_067657.1 · 32,428–33,489 bp · +
psbC · NC_067657.1 · 33,437–34,858 bp · +
psbZ · NC_067657.1 · 35,529–35,717 bp · +
trnG-GCC · NC_067657.1 · 35,962–36,032 bp · +
trnS-GGA · NC_067657.1 · 44,935–45,021 bp · +
trnL-UAA · NC_067657.1 · 47,107–47,650 bp · +
trnF-GAA · NC_067657.1 · 47,944–48,016 bp · +
trnM-CAU · NC_067657.1 · 52,149–52,221 bp · +
rbcL · NC_067657.1 · 55,108–56,541 bp · +
accD · NC_067657.1 · 57,246–58,727 bp · +
psaI · NC_067657.1 · 59,427–59,537 bp · +
ycf4 · NC_067657.1 · 59,984–60,538 bp · +
cemA · NC_067657.1 · 61,128–61,817 bp · +
petA · NC_067657.1 · 62,032–62,994 bp · +
petL · NC_067657.1 · 65,707–65,802 bp · +
petG · NC_067657.1 · 65,977–66,090 bp · +
psaJ · NC_067657.1 · 66,801–66,935 bp · +
rpl33 · NC_067657.1 · 67,397–67,597 bp · +
rps18 · NC_067657.1 · 67,764–68,069 bp · +
rps12 · NC_067657.1 · 138,551–139,343 bp · +
psbB · NC_067657.1 · 72,046–73,572 bp · +
psbT · NC_067657.1 · 73,757–73,858 bp · +
psbH · NC_067657.1 · 74,161–74,379 bp · +
petB · NC_067657.1 · 74,505–75,865 bp · +
petD · NC_067657.1 · 76,054–77,246 bp · +
ycf2 · NC_067657.1 · 85,754–92,584 bp · +
ycf15 · NC_067657.1 · 92,774–92,923 bp · +
trnV-GAC · NC_067657.1 · 99,289–99,360 bp · +
rrn16 · NC_067657.1 · 99,587–101,077 bp · +
trnI-GAU · NC_067657.1 · 101,375–102,393 bp · +
trnA-UGC · NC_067657.1 · 102,458–103,336 bp · +
rrn23 · NC_067657.1 · 103,508–106,318 bp · +
rrn4.5 · NC_067657.1 · 106,417–106,519 bp · +
rrn5 · NC_067657.1 · 106,775–106,895 bp · +
trnR-ACG · NC_067657.1 · 107,139–107,212 bp · +
ycf1 · NC_067657.1 · 108,192–109,322 bp · +
rpl32 · NC_067657.1 · 111,916–112,086 bp · +
trnL-UAG · NC_067657.1 · 112,850–112,929 bp · +
ccsA · NC_067657.1 · 113,018–113,989 bp · +
trnN-GUU · NC_067657.1 · 128,328–128,399 bp · +
rps7 · NC_067657.1 · 139,397–139,864 bp · +
ndhB · NC_067657.1 · 140,135–142,342 bp · +
trnL-CAA · NC_067657.1 · 142,914–142,994 bp · +
trnI-CAU · NC_067657.1 · 150,519–150,592 bp · +
rpl23 · NC_067657.1 · 150,758–151,039 bp · +
rpl2 · NC_067657.1 · 151,058–152,536 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Isodon excisoides
ANNOTATED PLASTOME
NC_067657.1
152,646 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
ATP synthase
Ribosomal protein
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38162 76323 114484 152646 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK OOC83_pgp086 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 11 85 75 Locate
psbA gene − 393 1451 1059 Locate
trnK-UUU gene − 1683 4258 2576 Locate
matK gene − 2003 3523 1521 Locate
OOC83_pgp086 gene − 4786 5931 1146 Locate
trnQ-UUG gene − 6872 6943 72 Locate
psbK gene + 7337 7522 186 Locate
psbI gene + 7910 8020 111 Locate
trnS-GCU gene − 8176 8263 88 Locate
trnG-UCC gene + 9029 9789 761 Locate
trnR-UCU gene + 9980 10051 72 Locate
atpA gene − 10155 11678 1524 Locate
atpF gene − 11783 13028 1246 Locate
atpH gene − 13320 13565 246 Locate
atpI gene − 14566 15309 744 Locate
rps2 gene − 15535 16245 711 Locate
rpoC2 gene − 16462 20643 4182 Locate
rpoC1 gene − 20808 23646 2839 Locate
rpoB gene − 23673 26885 3213 Locate
trnC-GCA gene + 28075 28145 71 Locate
petN gene + 28308 28397 90 Locate
psbM gene − 29389 29493 105 Locate
trnD-GUC gene − 30012 30085 74 Locate
trnY-GUA gene − 30196 30279 84 Locate
trnE-UUC gene − 30357 30429 73 Locate
trnT-GGU gene + 31039 31110 72 Locate
psbD gene + 32428 33489 1062 Locate
psbC gene + 33437 34858 1422 Locate
trnS-UGA gene − 35096 35188 93 Locate
psbZ gene + 35529 35717 189 Locate
trnG-GCC gene + 35962 36032 71 Locate
trnfM-CAU gene − 36223 36296 74 Locate
rps14 gene − 36442 36744 303 Locate
psaB gene − 36867 39071 2205 Locate
psaA gene − 39097 41349 2253 Locate
ycf3 gene − 42123 44070 1948 Locate
trnS-GGA gene + 44935 45021 87 Locate
rps4 gene − 45318 45923 606 Locate
trnT-UGU gene − 46348 46420 73 Locate
trnL-UAA gene + 47107 47650 544 Locate
trnF-GAA gene + 47944 48016 73 Locate
ndhJ gene − 48684 49160 477 Locate
ndhK gene − 49265 49942 678 Locate
ndhC gene − 49994 50356 363 Locate
trnV-UAC gene − 51313 51968 656 Locate
trnM-CAU gene + 52149 52221 73 Locate
atpE gene − 52422 52823 402 Locate
atpB gene − 52820 54316 1497 Locate
rbcL gene + 55108 56541 1434 Locate
accD gene + 57246 58727 1482 Locate
psaI gene + 59427 59537 111 Locate
ycf4 gene + 59984 60538 555 Locate
cemA gene + 61128 61817 690 Locate
petA gene + 62032 62994 963 Locate
psbJ gene − 64032 64154 123 Locate
psbL gene − 64289 64405 117 Locate
psbF gene − 64429 64548 120 Locate
psbE gene − 64563 64814 252 Locate
petL gene + 65707 65802 96 Locate
petG gene + 65977 66090 114 Locate
trnW-CCA gene − 66204 66277 74 Locate
trnP-UGG gene − 66446 66519 74 Locate
psaJ gene + 66801 66935 135 Locate
rpl33 gene + 67397 67597 201 Locate
rps18 gene + 67764 68069 306 Locate
rpl20 gene − 68303 68689 387 Locate
rps12 gene − 69424 69537 114 Locate
clpP gene − 69656 71573 1918 Locate
psbB gene + 72046 73572 1527 Locate
psbT gene + 73757 73858 102 Locate
psbN gene − 73924 74055 132 Locate
psbH gene + 74161 74379 219 Locate
petB gene + 74505 75865 1361 Locate
petD gene + 76054 77246 1193 Locate
rpoA gene − 77423 78430 1008 Locate
rps11 gene − 78502 78918 417 Locate
rpl36 gene − 79034 79147 114 Locate
infA gene − 79243 79476 234 Locate
rps8 gene − 79603 80007 405 Locate
rpl14 gene − 80198 80566 369 Locate
rpl16 gene − 80700 81967 1268 Locate
rps3 gene − 82111 82773 663 Locate
rpl22 gene − 82758 83231 474 Locate
rps19 gene − 83296 83574 279 Locate
rpl2 gene − 83642 85120 1479 Locate
rpl23 gene − 85139 85420 282 Locate
trnI-CAU gene − 85586 85659 74 Locate
ycf2 gene + 85754 92584 6831 Locate
ycf15 gene + 92774 92923 150 Locate
trnL-CAA gene − 93184 93264 81 Locate
ndhB gene − 93836 96043 2208 Locate
rps7 gene − 96314 96781 468 Locate
rps12 gene − 96835 97627 793 Locate
trnV-GAC gene + 99289 99360 72 Locate
rrn16 gene + 99587 101077 1491 Locate
trnI-GAU gene + 101375 102393 1019 Locate
trnA-UGC gene + 102458 103336 879 Locate
rrn23 gene + 103508 106318 2811 Locate
rrn4.5 gene + 106417 106519 103 Locate
rrn5 gene + 106775 106895 121 Locate
trnR-ACG gene + 107139 107212 74 Locate
trnN-GUU gene − 107779 107850 72 Locate
ycf1 gene + 108192 109322 1131 Locate
ndhF gene − 109216 111447 2232 Locate
rpl32 gene + 111916 112086 171 Locate
trnL-UAG gene + 112850 112929 80 Locate
ccsA gene + 113018 113989 972 Locate
ndhD gene − 114221 115750 1530 Locate
psaC gene − 115841 116086 246 Locate
ndhE gene − 116342 116647 306 Locate
ndhG gene − 116862 117392 531 Locate
ndhI gene − 117754 118260 507 Locate
ndhA gene − 118341 120464 2124 Locate
ndhH gene − 120466 121647 1182 Locate
rps15 gene − 121762 122034 273 Locate
ycf1 gene − 122464 127986 5523 Locate
trnN-GUU gene + 128328 128399 72 Locate
trnR-ACG gene − 128966 129039 74 Locate
rrn5 gene − 129283 129403 121 Locate
rrn4.5 gene − 129659 129761 103 Locate
rrn23 gene − 129860 132670 2811 Locate
trnA-UGC gene − 132842 133720 879 Locate
trnI-GAU gene − 133785 134803 1019 Locate
rrn16 gene − 135101 136591 1491 Locate
trnV-GAC gene − 136818 136889 72 Locate
rps12 gene + 138551 139343 793 Locate
rps7 gene + 139397 139864 468 Locate
ndhB gene + 140135 142342 2208 Locate
trnL-CAA gene + 142914 142994 81 Locate
ycf15 gene − 143255 143404 150 Locate
ycf2 gene − 143594 150424 6831 Locate
trnI-CAU gene + 150519 150592 74 Locate
rpl23 gene + 150758 151039 282 Locate
rpl2 gene + 151058 152536 1479 Locate
Status Available
Accession NC_067657.1
Length 152,646 bp
GC content 37.6%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 16 Atp Synthase 6 Ribosomal Protein 25 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources