Isodon flavidus chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · NC_067658.1 · 11–85 bp · −
psbA · NC_067658.1 · 338–1,396 bp · −
trnK-UUU · NC_067658.1 · 1,628–4,207 bp · −
matK · NC_067658.1 · 1,948–3,468 bp · −
OOC35_pgp086 · NC_067658.1 · 4,746–5,887 bp · −
trnQ-UUG · NC_067658.1 · 6,733–6,804 bp · −
trnS-GCU · NC_067658.1 · 8,040–8,127 bp · −
atpA · NC_067658.1 · 9,914–11,437 bp · −
atpF · NC_067658.1 · 11,538–12,786 bp · −
atpH · NC_067658.1 · 13,078–13,323 bp · −
atpI · NC_067658.1 · 14,268–15,011 bp · −
rps2 · NC_067658.1 · 15,237–15,947 bp · −
rpoC2 · NC_067658.1 · 16,161–20,348 bp · −
rpoC1 · NC_067658.1 · 20,513–23,346 bp · −
rpoB · NC_067658.1 · 23,373–26,585 bp · −
psbM · NC_067658.1 · 29,092–29,196 bp · −
trnD-GUC · NC_067658.1 · 29,715–29,788 bp · −
trnY-GUA · NC_067658.1 · 29,899–29,982 bp · −
trnE-UUC · NC_067658.1 · 30,060–30,132 bp · −
trnS-UGA · NC_067658.1 · 34,818–34,910 bp · −
trnfM-CAU · NC_067658.1 · 35,920–35,993 bp · −
rps14 · NC_067658.1 · 36,138–36,440 bp · −
psaB · NC_067658.1 · 36,563–38,767 bp · −
psaA · NC_067658.1 · 38,793–41,045 bp · −
ycf3 · NC_067658.1 · 41,843–43,803 bp · −
rps4 · NC_067658.1 · 45,032–45,637 bp · −
trnT-UGU · NC_067658.1 · 46,050–46,122 bp · −
ndhJ · NC_067658.1 · 48,410–48,886 bp · −
ndhK · NC_067658.1 · 48,989–49,666 bp · −
ndhC · NC_067658.1 · 49,718–50,080 bp · −
trnV-UAC · NC_067658.1 · 51,035–51,692 bp · −
atpE · NC_067658.1 · 52,151–52,552 bp · −
atpB · NC_067658.1 · 52,549–54,045 bp · −
psbJ · NC_067658.1 · 63,718–63,840 bp · −
psbL · NC_067658.1 · 63,975–64,091 bp · −
psbF · NC_067658.1 · 64,115–64,234 bp · −
psbE · NC_067658.1 · 64,249–64,500 bp · −
trnW-CCA · NC_067658.1 · 65,900–65,973 bp · −
trnP-UGG · NC_067658.1 · 66,143–66,216 bp · −
rpl20 · NC_067658.1 · 67,989–68,375 bp · −
rps12 · NC_067658.1 · 69,107–69,220 bp · −
rps12 · NC_067658.1 · 96,484–97,267 bp · −
clpP · NC_067658.1 · 69,339–71,264 bp · −
psbN · NC_067658.1 · 73,615–73,746 bp · −
rpoA · NC_067658.1 · 77,121–78,128 bp · −
rps11 · NC_067658.1 · 78,200–78,616 bp · −
rpl36 · NC_067658.1 · 78,726–78,839 bp · −
infA · NC_067658.1 · 78,935–79,168 bp · −
rps8 · NC_067658.1 · 79,294–79,698 bp · −
rpl14 · NC_067658.1 · 79,870–80,238 bp · −
rpl16 · NC_067658.1 · 80,374–81,642 bp · −
rps3 · NC_067658.1 · 81,795–82,457 bp · −
rpl22 · NC_067658.1 · 82,442–82,915 bp · −
rps19 · NC_067658.1 · 82,980–83,258 bp · −
rpl2 · NC_067658.1 · 83,327–84,805 bp · −
rpl23 · NC_067658.1 · 84,824–85,105 bp · −
trnI-CAU · NC_067658.1 · 85,271–85,344 bp · −
trnL-CAA · NC_067658.1 · 92,842–92,922 bp · −
ndhB · NC_067658.1 · 93,485–95,692 bp · −
rps7 · NC_067658.1 · 95,963–96,430 bp · −
trnN-GUU · NC_067658.1 · 107,410–107,481 bp · −
ndhF · NC_067658.1 · 108,846–111,077 bp · −
ndhD · NC_067658.1 · 113,859–115,388 bp · −
psaC · NC_067658.1 · 115,479–115,724 bp · −
ndhE · NC_067658.1 · 115,980–116,285 bp · −
ndhG · NC_067658.1 · 116,500–117,030 bp · −
ndhI · NC_067658.1 · 117,399–117,905 bp · −
ndhA · NC_067658.1 · 117,986–120,095 bp · −
ndhH · NC_067658.1 · 120,097–121,278 bp · −
rps15 · NC_067658.1 · 121,393–121,656 bp · −
ycf1 · NC_067658.1 · 122,096–127,651 bp · −
trnR-ACG · NC_067658.1 · 128,636–128,709 bp · −
rrn5 · NC_067658.1 · 128,953–129,073 bp · −
rrn4.5 · NC_067658.1 · 129,329–129,431 bp · −
rrn23 · NC_067658.1 · 129,530–132,340 bp · −
trnA-UGC · NC_067658.1 · 132,504–133,382 bp · −
trnI-GAU · NC_067658.1 · 133,447–134,465 bp · −
rrn16 · NC_067658.1 · 134,763–136,253 bp · −
trnV-GAC · NC_067658.1 · 136,480–136,551 bp · −
ycf15 · NC_067658.1 · 142,892–143,041 bp · −
ycf2 · NC_067658.1 · 143,231–150,034 bp · −
psbK · NC_067658.1 · 7,199–7,384 bp · +
psbI · NC_067658.1 · 7,775–7,885 bp · +
trnG-UCC · NC_067658.1 · 8,789–9,548 bp · +
trnR-UCU · NC_067658.1 · 9,738–9,809 bp · +
trnC-GCA · NC_067658.1 · 27,777–27,847 bp · +
petN · NC_067658.1 · 28,010–28,099 bp · +
trnT-GGU · NC_067658.1 · 30,708–30,779 bp · +
psbD · NC_067658.1 · 32,152–33,213 bp · +
psbC · NC_067658.1 · 33,161–34,582 bp · +
psbZ · NC_067658.1 · 35,251–35,439 bp · +
trnG-GCC · NC_067658.1 · 35,677–35,747 bp · +
trnS-GGA · NC_067658.1 · 44,649–44,735 bp · +
trnL-UAA · NC_067658.1 · 46,816–47,359 bp · +
trnF-GAA · NC_067658.1 · 47,659–47,731 bp · +
trnM-CAU · NC_067658.1 · 51,873–51,945 bp · +
rbcL · NC_067658.1 · 54,844–56,289 bp · +
accD · NC_067658.1 · 56,972–58,453 bp · +
psaI · NC_067658.1 · 59,151–59,261 bp · +
ycf4 · NC_067658.1 · 59,706–60,260 bp · +
cemA · NC_067658.1 · 60,846–61,535 bp · +
petA · NC_067658.1 · 61,750–62,712 bp · +
petL · NC_067658.1 · 65,394–65,489 bp · +
petG · NC_067658.1 · 65,664–65,777 bp · +
psaJ · NC_067658.1 · 66,500–66,634 bp · +
rpl33 · NC_067658.1 · 67,082–67,282 bp · +
rps18 · NC_067658.1 · 67,449–67,754 bp · +
rps12 · NC_067658.1 · 138,206–138,989 bp · +
psbB · NC_067658.1 · 71,737–73,263 bp · +
psbT · NC_067658.1 · 73,448–73,549 bp · +
psbH · NC_067658.1 · 73,852–74,070 bp · +
petB · NC_067658.1 · 74,205–75,562 bp · +
petD · NC_067658.1 · 75,751–76,944 bp · +
ycf2 · NC_067658.1 · 85,439–92,242 bp · +
ycf15 · NC_067658.1 · 92,432–92,581 bp · +
trnV-GAC · NC_067658.1 · 98,922–98,993 bp · +
rrn16 · NC_067658.1 · 99,220–100,710 bp · +
trnI-GAU · NC_067658.1 · 101,008–102,026 bp · +
trnA-UGC · NC_067658.1 · 102,091–102,969 bp · +
rrn23 · NC_067658.1 · 103,133–105,943 bp · +
rrn4.5 · NC_067658.1 · 106,042–106,144 bp · +
rrn5 · NC_067658.1 · 106,400–106,520 bp · +
trnR-ACG · NC_067658.1 · 106,764–106,837 bp · +
ycf1 · NC_067658.1 · 107,822–108,952 bp · +
rpl32 · NC_067658.1 · 111,562–111,732 bp · +
trnL-UAG · NC_067658.1 · 112,490–112,569 bp · +
ccsA · NC_067658.1 · 112,657–113,628 bp · +
trnN-GUU · NC_067658.1 · 127,992–128,063 bp · +
rps7 · NC_067658.1 · 139,043–139,510 bp · +
ndhB · NC_067658.1 · 139,781–141,988 bp · +
trnL-CAA · NC_067658.1 · 142,551–142,636 bp · +
trnI-CAU · NC_067658.1 · 150,129–150,202 bp · +
rpl23 · NC_067658.1 · 150,368–150,649 bp · +
rpl2 · NC_067658.1 · 150,668–152,146 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Isodon flavidus
ANNOTATED PLASTOME
NC_067658.1
152,257 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
ATP synthase
Ribosomal protein
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38064 76128 114193 152257 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK OOC35_pgp086 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 11 85 75 Locate
psbA gene − 338 1396 1059 Locate
trnK-UUU gene − 1628 4207 2580 Locate
matK gene − 1948 3468 1521 Locate
OOC35_pgp086 gene − 4746 5887 1142 Locate
trnQ-UUG gene − 6733 6804 72 Locate
psbK gene + 7199 7384 186 Locate
psbI gene + 7775 7885 111 Locate
trnS-GCU gene − 8040 8127 88 Locate
trnG-UCC gene + 8789 9548 760 Locate
trnR-UCU gene + 9738 9809 72 Locate
atpA gene − 9914 11437 1524 Locate
atpF gene − 11538 12786 1249 Locate
atpH gene − 13078 13323 246 Locate
atpI gene − 14268 15011 744 Locate
rps2 gene − 15237 15947 711 Locate
rpoC2 gene − 16161 20348 4188 Locate
rpoC1 gene − 20513 23346 2834 Locate
rpoB gene − 23373 26585 3213 Locate
trnC-GCA gene + 27777 27847 71 Locate
petN gene + 28010 28099 90 Locate
psbM gene − 29092 29196 105 Locate
trnD-GUC gene − 29715 29788 74 Locate
trnY-GUA gene − 29899 29982 84 Locate
trnE-UUC gene − 30060 30132 73 Locate
trnT-GGU gene + 30708 30779 72 Locate
psbD gene + 32152 33213 1062 Locate
psbC gene + 33161 34582 1422 Locate
trnS-UGA gene − 34818 34910 93 Locate
psbZ gene + 35251 35439 189 Locate
trnG-GCC gene + 35677 35747 71 Locate
trnfM-CAU gene − 35920 35993 74 Locate
rps14 gene − 36138 36440 303 Locate
psaB gene − 36563 38767 2205 Locate
psaA gene − 38793 41045 2253 Locate
ycf3 gene − 41843 43803 1961 Locate
trnS-GGA gene + 44649 44735 87 Locate
rps4 gene − 45032 45637 606 Locate
trnT-UGU gene − 46050 46122 73 Locate
trnL-UAA gene + 46816 47359 544 Locate
trnF-GAA gene + 47659 47731 73 Locate
ndhJ gene − 48410 48886 477 Locate
ndhK gene − 48989 49666 678 Locate
ndhC gene − 49718 50080 363 Locate
trnV-UAC gene − 51035 51692 658 Locate
trnM-CAU gene + 51873 51945 73 Locate
atpE gene − 52151 52552 402 Locate
atpB gene − 52549 54045 1497 Locate
rbcL gene + 54844 56289 1446 Locate
accD gene + 56972 58453 1482 Locate
psaI gene + 59151 59261 111 Locate
ycf4 gene + 59706 60260 555 Locate
cemA gene + 60846 61535 690 Locate
petA gene + 61750 62712 963 Locate
psbJ gene − 63718 63840 123 Locate
psbL gene − 63975 64091 117 Locate
psbF gene − 64115 64234 120 Locate
psbE gene − 64249 64500 252 Locate
petL gene + 65394 65489 96 Locate
petG gene + 65664 65777 114 Locate
trnW-CCA gene − 65900 65973 74 Locate
trnP-UGG gene − 66143 66216 74 Locate
psaJ gene + 66500 66634 135 Locate
rpl33 gene + 67082 67282 201 Locate
rps18 gene + 67449 67754 306 Locate
rpl20 gene − 67989 68375 387 Locate
rps12 gene − 69107 69220 114 Locate
clpP gene − 69339 71264 1926 Locate
psbB gene + 71737 73263 1527 Locate
psbT gene + 73448 73549 102 Locate
psbN gene − 73615 73746 132 Locate
psbH gene + 73852 74070 219 Locate
petB gene + 74205 75562 1358 Locate
petD gene + 75751 76944 1194 Locate
rpoA gene − 77121 78128 1008 Locate
rps11 gene − 78200 78616 417 Locate
rpl36 gene − 78726 78839 114 Locate
infA gene − 78935 79168 234 Locate
rps8 gene − 79294 79698 405 Locate
rpl14 gene − 79870 80238 369 Locate
rpl16 gene − 80374 81642 1269 Locate
rps3 gene − 81795 82457 663 Locate
rpl22 gene − 82442 82915 474 Locate
rps19 gene − 82980 83258 279 Locate
rpl2 gene − 83327 84805 1479 Locate
rpl23 gene − 84824 85105 282 Locate
trnI-CAU gene − 85271 85344 74 Locate
ycf2 gene + 85439 92242 6804 Locate
ycf15 gene + 92432 92581 150 Locate
trnL-CAA gene − 92842 92922 81 Locate
ndhB gene − 93485 95692 2208 Locate
rps7 gene − 95963 96430 468 Locate
rps12 gene − 96484 97267 784 Locate
trnV-GAC gene + 98922 98993 72 Locate
rrn16 gene + 99220 100710 1491 Locate
trnI-GAU gene + 101008 102026 1019 Locate
trnA-UGC gene + 102091 102969 879 Locate
rrn23 gene + 103133 105943 2811 Locate
rrn4.5 gene + 106042 106144 103 Locate
rrn5 gene + 106400 106520 121 Locate
trnR-ACG gene + 106764 106837 74 Locate
trnN-GUU gene − 107410 107481 72 Locate
ycf1 gene + 107822 108952 1131 Locate
ndhF gene − 108846 111077 2232 Locate
rpl32 gene + 111562 111732 171 Locate
trnL-UAG gene + 112490 112569 80 Locate
ccsA gene + 112657 113628 972 Locate
ndhD gene − 113859 115388 1530 Locate
psaC gene − 115479 115724 246 Locate
ndhE gene − 115980 116285 306 Locate
ndhG gene − 116500 117030 531 Locate
ndhI gene − 117399 117905 507 Locate
ndhA gene − 117986 120095 2110 Locate
ndhH gene − 120097 121278 1182 Locate
rps15 gene − 121393 121656 264 Locate
ycf1 gene − 122096 127651 5556 Locate
trnN-GUU gene + 127992 128063 72 Locate
trnR-ACG gene − 128636 128709 74 Locate
rrn5 gene − 128953 129073 121 Locate
rrn4.5 gene − 129329 129431 103 Locate
rrn23 gene − 129530 132340 2811 Locate
trnA-UGC gene − 132504 133382 879 Locate
trnI-GAU gene − 133447 134465 1019 Locate
rrn16 gene − 134763 136253 1491 Locate
trnV-GAC gene − 136480 136551 72 Locate
rps12 gene + 138206 138989 784 Locate
rps7 gene + 139043 139510 468 Locate
ndhB gene + 139781 141988 2208 Locate
trnL-CAA gene + 142551 142636 86 Locate
ycf15 gene − 142892 143041 150 Locate
ycf2 gene − 143231 150034 6804 Locate
trnI-CAU gene + 150129 150202 74 Locate
rpl23 gene + 150368 150649 282 Locate
rpl2 gene + 150668 152146 1479 Locate
Status Available
Accession NC_067658.1
Length 152,257 bp
GC content 37.6%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 16 Atp Synthase 6 Ribosomal Protein 25 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources