Isodon flexicaulis chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · NC_067701.1 · 11–85 bp · −
psbA · NC_067701.1 · 393–1,451 bp · −
trnK-UUU · NC_067701.1 · 1,683–4,263 bp · −
matK · NC_067701.1 · 2,003–3,523 bp · −
OOC34_pgp086 · NC_067701.1 · 4,796–5,941 bp · −
trnQ-UUG · NC_067701.1 · 6,889–6,960 bp · −
trnS-GCU · NC_067701.1 · 8,192–8,279 bp · −
atpA · NC_067701.1 · 10,173–11,696 bp · −
atpF · NC_067701.1 · 11,800–13,046 bp · −
atpH · NC_067701.1 · 13,338–13,583 bp · −
atpI · NC_067701.1 · 14,585–15,328 bp · −
rps2 · NC_067701.1 · 15,554–16,264 bp · −
rpoC2 · NC_067701.1 · 16,477–20,658 bp · −
rpoC1 · NC_067701.1 · 20,823–23,661 bp · −
rpoB · NC_067701.1 · 23,688–26,900 bp · −
psbM · NC_067701.1 · 29,402–29,506 bp · −
trnD-GUC · NC_067701.1 · 30,025–30,098 bp · −
trnY-GUA · NC_067701.1 · 30,209–30,292 bp · −
trnE-UUC · NC_067701.1 · 30,370–30,442 bp · −
trnS-UGA · NC_067701.1 · 35,109–35,201 bp · −
trnfM-CAU · NC_067701.1 · 36,232–36,305 bp · −
rps14 · NC_067701.1 · 36,451–36,753 bp · −
psaB · NC_067701.1 · 36,876–39,080 bp · −
psaA · NC_067701.1 · 39,106–41,358 bp · −
ycf3 · NC_067701.1 · 42,129–44,076 bp · −
rps4 · NC_067701.1 · 45,323–45,928 bp · −
trnT-UGU · NC_067701.1 · 46,353–46,425 bp · −
ndhJ · NC_067701.1 · 48,690–49,166 bp · −
ndhK · NC_067701.1 · 49,277–49,954 bp · −
ndhC · NC_067701.1 · 50,006–50,368 bp · −
trnV-UAC · NC_067701.1 · 51,325–51,980 bp · −
atpE · NC_067701.1 · 52,434–52,835 bp · −
atpB · NC_067701.1 · 52,832–54,328 bp · −
psbJ · NC_067701.1 · 64,039–64,161 bp · −
psbL · NC_067701.1 · 64,296–64,412 bp · −
psbF · NC_067701.1 · 64,436–64,555 bp · −
psbE · NC_067701.1 · 64,570–64,821 bp · −
trnW-CCA · NC_067701.1 · 66,220–66,293 bp · −
trnP-UGG · NC_067701.1 · 66,462–66,535 bp · −
rpl20 · NC_067701.1 · 68,320–68,706 bp · −
rps12 · NC_067701.1 · 69,441–69,554 bp · −
rps12 · NC_067701.1 · 96,859–97,651 bp · −
clpP · NC_067701.1 · 69,673–71,590 bp · −
psbN · NC_067701.1 · 73,942–74,073 bp · −
rpoA · NC_067701.1 · 77,447–78,454 bp · −
rps11 · NC_067701.1 · 78,526–78,942 bp · −
rpl36 · NC_067701.1 · 79,058–79,171 bp · −
infA · NC_067701.1 · 79,267–79,500 bp · −
rps8 · NC_067701.1 · 79,627–80,031 bp · −
rpl14 · NC_067701.1 · 80,222–80,590 bp · −
rpl16 · NC_067701.1 · 80,724–81,991 bp · −
rps3 · NC_067701.1 · 82,135–82,797 bp · −
rpl22 · NC_067701.1 · 82,782–83,255 bp · −
rps19 · NC_067701.1 · 83,320–83,598 bp · −
rpl2 · NC_067701.1 · 83,666–85,144 bp · −
rpl23 · NC_067701.1 · 85,163–85,444 bp · −
trnI-CAU · NC_067701.1 · 85,610–85,683 bp · −
trnL-CAA · NC_067701.1 · 93,208–93,288 bp · −
ndhB · NC_067701.1 · 93,860–96,067 bp · −
rps7 · NC_067701.1 · 96,338–96,805 bp · −
trnN-GUU · NC_067701.1 · 107,803–107,874 bp · −
ndhF · NC_067701.1 · 109,240–111,471 bp · −
ndhD · NC_067701.1 · 114,239–115,768 bp · −
psaC · NC_067701.1 · 115,859–116,104 bp · −
ndhE · NC_067701.1 · 116,360–116,662 bp · −
ndhG · NC_067701.1 · 116,880–117,410 bp · −
ndhI · NC_067701.1 · 117,771–118,277 bp · −
ndhA · NC_067701.1 · 118,358–120,480 bp · −
ndhH · NC_067701.1 · 120,482–121,663 bp · −
rps15 · NC_067701.1 · 121,778–122,050 bp · −
ycf1 · NC_067701.1 · 122,480–128,002 bp · −
trnR-ACG · NC_067701.1 · 128,982–129,055 bp · −
rrn5 · NC_067701.1 · 129,299–129,419 bp · −
rrn4.5 · NC_067701.1 · 129,675–129,777 bp · −
rrn23 · NC_067701.1 · 129,876–132,686 bp · −
trnA-UGC · NC_067701.1 · 132,858–133,736 bp · −
trnI-GAU · NC_067701.1 · 133,801–134,819 bp · −
rrn16 · NC_067701.1 · 135,117–136,607 bp · −
trnV-GAC · NC_067701.1 · 136,834–136,905 bp · −
ycf15 · NC_067701.1 · 143,271–143,420 bp · −
ycf2 · NC_067701.1 · 143,610–150,440 bp · −
psbK · NC_067701.1 · 7,354–7,539 bp · +
psbI · NC_067701.1 · 7,927–8,037 bp · +
trnG-UCC · NC_067701.1 · 9,048–9,807 bp · +
trnR-UCU · NC_067701.1 · 9,998–10,069 bp · +
trnC-GCA · NC_067701.1 · 28,089–28,159 bp · +
petN · NC_067701.1 · 28,322–28,411 bp · +
trnT-GGU · NC_067701.1 · 31,052–31,123 bp · +
psbD · NC_067701.1 · 32,441–33,502 bp · +
psbC · NC_067701.1 · 33,450–34,871 bp · +
psbZ · NC_067701.1 · 35,542–35,730 bp · +
trnG-GCC · NC_067701.1 · 35,975–36,045 bp · +
trnS-GGA · NC_067701.1 · 44,940–45,026 bp · +
trnL-UAA · NC_067701.1 · 47,113–47,656 bp · +
trnF-GAA · NC_067701.1 · 47,950–48,022 bp · +
trnM-CAU · NC_067701.1 · 52,161–52,233 bp · +
rbcL · NC_067701.1 · 55,114–56,547 bp · +
accD · NC_067701.1 · 57,252–58,733 bp · +
psaI · NC_067701.1 · 59,434–59,544 bp · +
ycf4 · NC_067701.1 · 59,991–60,545 bp · +
cemA · NC_067701.1 · 61,136–61,825 bp · +
petA · NC_067701.1 · 62,040–63,002 bp · +
petL · NC_067701.1 · 65,714–65,809 bp · +
petG · NC_067701.1 · 65,984–66,097 bp · +
psaJ · NC_067701.1 · 66,817–66,951 bp · +
rpl33 · NC_067701.1 · 67,413–67,613 bp · +
rps18 · NC_067701.1 · 67,780–68,085 bp · +
rps12 · NC_067701.1 · 138,567–139,359 bp · +
psbB · NC_067701.1 · 72,063–73,589 bp · +
psbT · NC_067701.1 · 73,775–73,876 bp · +
psbH · NC_067701.1 · 74,179–74,397 bp · +
petB · NC_067701.1 · 74,523–75,889 bp · +
petD · NC_067701.1 · 76,078–77,270 bp · +
ycf2 · NC_067701.1 · 85,778–92,608 bp · +
ycf15 · NC_067701.1 · 92,798–92,947 bp · +
trnV-GAC · NC_067701.1 · 99,313–99,384 bp · +
rrn16 · NC_067701.1 · 99,611–101,101 bp · +
trnI-GAU · NC_067701.1 · 101,399–102,417 bp · +
trnA-UGC · NC_067701.1 · 102,482–103,360 bp · +
rrn23 · NC_067701.1 · 103,532–106,342 bp · +
rrn4.5 · NC_067701.1 · 106,441–106,543 bp · +
rrn5 · NC_067701.1 · 106,799–106,919 bp · +
trnR-ACG · NC_067701.1 · 107,163–107,236 bp · +
ycf1 · NC_067701.1 · 108,216–109,346 bp · +
rpl32 · NC_067701.1 · 111,940–112,110 bp · +
trnL-UAG · NC_067701.1 · 112,868–112,947 bp · +
ccsA · NC_067701.1 · 113,036–114,007 bp · +
trnN-GUU · NC_067701.1 · 128,344–128,415 bp · +
rps7 · NC_067701.1 · 139,413–139,880 bp · +
ndhB · NC_067701.1 · 140,151–142,358 bp · +
trnL-CAA · NC_067701.1 · 142,930–143,010 bp · +
trnI-CAU · NC_067701.1 · 150,535–150,608 bp · +
rpl23 · NC_067701.1 · 150,774–151,055 bp · +
rpl2 · NC_067701.1 · 151,074–152,552 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Isodon flexicaulis
ANNOTATED PLASTOME
NC_067701.1
152,662 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
ATP synthase
Ribosomal protein
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38166 76331 114496 152662 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK OOC34_pgp086 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 11 85 75 Locate
psbA gene − 393 1451 1059 Locate
trnK-UUU gene − 1683 4263 2581 Locate
matK gene − 2003 3523 1521 Locate
OOC34_pgp086 gene − 4796 5941 1146 Locate
trnQ-UUG gene − 6889 6960 72 Locate
psbK gene + 7354 7539 186 Locate
psbI gene + 7927 8037 111 Locate
trnS-GCU gene − 8192 8279 88 Locate
trnG-UCC gene + 9048 9807 760 Locate
trnR-UCU gene + 9998 10069 72 Locate
atpA gene − 10173 11696 1524 Locate
atpF gene − 11800 13046 1247 Locate
atpH gene − 13338 13583 246 Locate
atpI gene − 14585 15328 744 Locate
rps2 gene − 15554 16264 711 Locate
rpoC2 gene − 16477 20658 4182 Locate
rpoC1 gene − 20823 23661 2839 Locate
rpoB gene − 23688 26900 3213 Locate
trnC-GCA gene + 28089 28159 71 Locate
petN gene + 28322 28411 90 Locate
psbM gene − 29402 29506 105 Locate
trnD-GUC gene − 30025 30098 74 Locate
trnY-GUA gene − 30209 30292 84 Locate
trnE-UUC gene − 30370 30442 73 Locate
trnT-GGU gene + 31052 31123 72 Locate
psbD gene + 32441 33502 1062 Locate
psbC gene + 33450 34871 1422 Locate
trnS-UGA gene − 35109 35201 93 Locate
psbZ gene + 35542 35730 189 Locate
trnG-GCC gene + 35975 36045 71 Locate
trnfM-CAU gene − 36232 36305 74 Locate
rps14 gene − 36451 36753 303 Locate
psaB gene − 36876 39080 2205 Locate
psaA gene − 39106 41358 2253 Locate
ycf3 gene − 42129 44076 1948 Locate
trnS-GGA gene + 44940 45026 87 Locate
rps4 gene − 45323 45928 606 Locate
trnT-UGU gene − 46353 46425 73 Locate
trnL-UAA gene + 47113 47656 544 Locate
trnF-GAA gene + 47950 48022 73 Locate
ndhJ gene − 48690 49166 477 Locate
ndhK gene − 49277 49954 678 Locate
ndhC gene − 50006 50368 363 Locate
trnV-UAC gene − 51325 51980 656 Locate
trnM-CAU gene + 52161 52233 73 Locate
atpE gene − 52434 52835 402 Locate
atpB gene − 52832 54328 1497 Locate
rbcL gene + 55114 56547 1434 Locate
accD gene + 57252 58733 1482 Locate
psaI gene + 59434 59544 111 Locate
ycf4 gene + 59991 60545 555 Locate
cemA gene + 61136 61825 690 Locate
petA gene + 62040 63002 963 Locate
psbJ gene − 64039 64161 123 Locate
psbL gene − 64296 64412 117 Locate
psbF gene − 64436 64555 120 Locate
psbE gene − 64570 64821 252 Locate
petL gene + 65714 65809 96 Locate
petG gene + 65984 66097 114 Locate
trnW-CCA gene − 66220 66293 74 Locate
trnP-UGG gene − 66462 66535 74 Locate
psaJ gene + 66817 66951 135 Locate
rpl33 gene + 67413 67613 201 Locate
rps18 gene + 67780 68085 306 Locate
rpl20 gene − 68320 68706 387 Locate
rps12 gene − 69441 69554 114 Locate
clpP gene − 69673 71590 1918 Locate
psbB gene + 72063 73589 1527 Locate
psbT gene + 73775 73876 102 Locate
psbN gene − 73942 74073 132 Locate
psbH gene + 74179 74397 219 Locate
petB gene + 74523 75889 1367 Locate
petD gene + 76078 77270 1193 Locate
rpoA gene − 77447 78454 1008 Locate
rps11 gene − 78526 78942 417 Locate
rpl36 gene − 79058 79171 114 Locate
infA gene − 79267 79500 234 Locate
rps8 gene − 79627 80031 405 Locate
rpl14 gene − 80222 80590 369 Locate
rpl16 gene − 80724 81991 1268 Locate
rps3 gene − 82135 82797 663 Locate
rpl22 gene − 82782 83255 474 Locate
rps19 gene − 83320 83598 279 Locate
rpl2 gene − 83666 85144 1479 Locate
rpl23 gene − 85163 85444 282 Locate
trnI-CAU gene − 85610 85683 74 Locate
ycf2 gene + 85778 92608 6831 Locate
ycf15 gene + 92798 92947 150 Locate
trnL-CAA gene − 93208 93288 81 Locate
ndhB gene − 93860 96067 2208 Locate
rps7 gene − 96338 96805 468 Locate
rps12 gene − 96859 97651 793 Locate
trnV-GAC gene + 99313 99384 72 Locate
rrn16 gene + 99611 101101 1491 Locate
trnI-GAU gene + 101399 102417 1019 Locate
trnA-UGC gene + 102482 103360 879 Locate
rrn23 gene + 103532 106342 2811 Locate
rrn4.5 gene + 106441 106543 103 Locate
rrn5 gene + 106799 106919 121 Locate
trnR-ACG gene + 107163 107236 74 Locate
trnN-GUU gene − 107803 107874 72 Locate
ycf1 gene + 108216 109346 1131 Locate
ndhF gene − 109240 111471 2232 Locate
rpl32 gene + 111940 112110 171 Locate
trnL-UAG gene + 112868 112947 80 Locate
ccsA gene + 113036 114007 972 Locate
ndhD gene − 114239 115768 1530 Locate
psaC gene − 115859 116104 246 Locate
ndhE gene − 116360 116662 303 Locate
ndhG gene − 116880 117410 531 Locate
ndhI gene − 117771 118277 507 Locate
ndhA gene − 118358 120480 2123 Locate
ndhH gene − 120482 121663 1182 Locate
rps15 gene − 121778 122050 273 Locate
ycf1 gene − 122480 128002 5523 Locate
trnN-GUU gene + 128344 128415 72 Locate
trnR-ACG gene − 128982 129055 74 Locate
rrn5 gene − 129299 129419 121 Locate
rrn4.5 gene − 129675 129777 103 Locate
rrn23 gene − 129876 132686 2811 Locate
trnA-UGC gene − 132858 133736 879 Locate
trnI-GAU gene − 133801 134819 1019 Locate
rrn16 gene − 135117 136607 1491 Locate
trnV-GAC gene − 136834 136905 72 Locate
rps12 gene + 138567 139359 793 Locate
rps7 gene + 139413 139880 468 Locate
ndhB gene + 140151 142358 2208 Locate
trnL-CAA gene + 142930 143010 81 Locate
ycf15 gene − 143271 143420 150 Locate
ycf2 gene − 143610 150440 6831 Locate
trnI-CAU gene + 150535 150608 74 Locate
rpl23 gene + 150774 151055 282 Locate
rpl2 gene + 151074 152552 1479 Locate
Status Available
Accession NC_067701.1
Length 152,662 bp
GC content 37.6%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 16 Atp Synthase 6 Ribosomal Protein 25 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources