Isodon grandifolius var. atuntzeensis chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · ON858856.1 · 11–85 bp · −
psbA · ON858856.1 · 389–1,447 bp · −
trnK-UUU · ON858856.1 · 1,679–4,259 bp · −
matK · ON858856.1 · 1,999–3,519 bp · −
trnQ-UUG · ON858856.1 · 6,875–6,946 bp · −
trnS-GCU · ON858856.1 · 8,178–8,265 bp · −
atpA · ON858856.1 · 10,160–11,683 bp · −
atpF · ON858856.1 · 11,794–13,039 bp · −
atpH · ON858856.1 · 13,331–13,576 bp · −
atpI · ON858856.1 · 14,577–15,320 bp · −
rps2 · ON858856.1 · 15,546–16,256 bp · −
rpoC2 · ON858856.1 · 16,473–20,654 bp · −
rpoC1 · ON858856.1 · 20,819–23,652 bp · −
rpoB · ON858856.1 · 23,679–26,891 bp · −
psbM · ON858856.1 · 29,389–29,493 bp · −
trnD-GUC · ON858856.1 · 30,012–30,085 bp · −
trnY-GUA · ON858856.1 · 30,196–30,279 bp · −
trnE-UUC · ON858856.1 · 30,357–30,429 bp · −
trnS-UGA · ON858856.1 · 35,094–35,186 bp · −
trnfM-CAU · ON858856.1 · 36,218–36,291 bp · −
rps14 · ON858856.1 · 36,437–36,739 bp · −
psaB · ON858856.1 · 36,862–39,066 bp · −
psaA · ON858856.1 · 39,092–41,344 bp · −
ycf3 · ON858856.1 · 42,116–44,062 bp · −
rps4 · ON858856.1 · 45,309–45,914 bp · −
trnT-UGU · ON858856.1 · 46,339–46,411 bp · −
ndhJ · ON858856.1 · 48,696–49,172 bp · −
ndhK · ON858856.1 · 49,319–49,960 bp · −
ndhC · ON858856.1 · 50,012–50,374 bp · −
trnV-UAC · ON858856.1 · 51,331–51,987 bp · −
atpE · ON858856.1 · 52,441–52,842 bp · −
atpB · ON858856.1 · 52,839–54,335 bp · −
psbJ · ON858856.1 · 64,062–64,184 bp · −
psbL · ON858856.1 · 64,319–64,435 bp · −
psbF · ON858856.1 · 64,459–64,578 bp · −
psbE · ON858856.1 · 64,593–64,844 bp · −
trnW-CCA · ON858856.1 · 66,243–66,316 bp · −
trnP-UGG · ON858856.1 · 66,485–66,558 bp · −
rpl20 · ON858856.1 · 68,349–68,735 bp · −
rps12 · ON858856.1 · 69,469–69,582 bp · −
rps12 · ON858856.1 · 96,877–97,669 bp · −
clpP · ON858856.1 · 69,701–71,615 bp · −
psbN · ON858856.1 · 73,966–74,097 bp · −
rpoA · ON858856.1 · 77,473–78,480 bp · −
rps11 · ON858856.1 · 78,552–78,968 bp · −
rpl36 · ON858856.1 · 79,084–79,197 bp · −
infA · ON858856.1 · 79,293–79,526 bp · −
rps8 · ON858856.1 · 79,653–80,057 bp · −
rpl14 · ON858856.1 · 80,240–80,608 bp · −
rpl16 · ON858856.1 · 80,742–82,009 bp · −
rps3 · ON858856.1 · 82,153–82,815 bp · −
rpl22 · ON858856.1 · 82,800–83,273 bp · −
rps19 · ON858856.1 · 83,338–83,616 bp · −
rpl2 · ON858856.1 · 83,684–85,162 bp · −
rpl23 · ON858856.1 · 85,181–85,462 bp · −
trnI-CAU · ON858856.1 · 85,628–85,701 bp · −
trnL-CAA · ON858856.1 · 93,226–93,306 bp · −
ndhB · ON858856.1 · 93,878–96,085 bp · −
rps7 · ON858856.1 · 96,356–96,823 bp · −
trnN-GUU · ON858856.1 · 107,821–107,892 bp · −
ndhF · ON858856.1 · 109,258–111,489 bp · −
ndhD · ON858856.1 · 114,271–115,800 bp · −
psaC · ON858856.1 · 115,891–116,136 bp · −
ndhE · ON858856.1 · 116,392–116,697 bp · −
ndhG · ON858856.1 · 116,912–117,442 bp · −
ndhI · ON858856.1 · 117,801–118,307 bp · −
ndhA · ON858856.1 · 118,388–120,511 bp · −
ndhH · ON858856.1 · 120,513–121,694 bp · −
rps15 · ON858856.1 · 121,809–122,081 bp · −
ycf1 · ON858856.1 · 122,511–128,033 bp · −
trnR-ACG · ON858856.1 · 129,013–129,086 bp · −
rrn5 · ON858856.1 · 129,330–129,450 bp · −
rrn4.5 · ON858856.1 · 129,706–129,808 bp · −
rrn23 · ON858856.1 · 129,907–132,717 bp · −
trnA-UGC · ON858856.1 · 132,889–133,767 bp · −
trnI-GAU · ON858856.1 · 133,832–134,850 bp · −
rrn16 · ON858856.1 · 135,148–136,638 bp · −
trnV-GAC · ON858856.1 · 136,865–136,936 bp · −
ycf15 · ON858856.1 · 143,302–143,451 bp · −
ycf2 · ON858856.1 · 143,641–150,471 bp · −
psbK · ON858856.1 · 7,340–7,525 bp · +
psbI · ON858856.1 · 7,913–8,023 bp · +
trnG-UCC · ON858856.1 · 9,035–9,794 bp · +
trnR-UCU · ON858856.1 · 9,985–10,056 bp · +
trnC-GCA · ON858856.1 · 28,075–28,145 bp · +
petN · ON858856.1 · 28,308–28,397 bp · +
trnT-GGU · ON858856.1 · 31,039–31,110 bp · +
psbD · ON858856.1 · 32,428–33,489 bp · +
psbC · ON858856.1 · 33,437–34,858 bp · +
psbZ · ON858856.1 · 35,527–35,715 bp · +
trnG-GCC · ON858856.1 · 35,960–36,030 bp · +
trnS-GGA · ON858856.1 · 44,926–45,012 bp · +
trnL-UAA · ON858856.1 · 47,098–47,662 bp · +
trnF-GAA · ON858856.1 · 47,956–48,028 bp · +
trnM-CAU · ON858856.1 · 52,168–52,240 bp · +
rbcL · ON858856.1 · 55,127–56,560 bp · +
accD · ON858856.1 · 57,265–58,746 bp · +
psaI · ON858856.1 · 59,447–59,557 bp · +
ycf4 · ON858856.1 · 60,005–60,559 bp · +
cemA · ON858856.1 · 61,150–61,839 bp · +
petA · ON858856.1 · 62,054–63,016 bp · +
petL · ON858856.1 · 65,737–65,832 bp · +
petG · ON858856.1 · 66,007–66,120 bp · +
psaJ · ON858856.1 · 66,845–66,979 bp · +
rpl33 · ON858856.1 · 67,442–67,642 bp · +
rps18 · ON858856.1 · 67,809–68,114 bp · +
rps12 · ON858856.1 · 138,598–139,390 bp · +
psbB · ON858856.1 · 72,088–73,614 bp · +
psbT · ON858856.1 · 73,799–73,900 bp · +
psbH · ON858856.1 · 74,203–74,421 bp · +
petB · ON858856.1 · 74,547–75,915 bp · +
petD · ON858856.1 · 76,104–77,296 bp · +
ycf2 · ON858856.1 · 85,796–92,626 bp · +
ycf15 · ON858856.1 · 92,816–92,965 bp · +
trnV-GAC · ON858856.1 · 99,331–99,402 bp · +
rrn16 · ON858856.1 · 99,629–101,119 bp · +
trnI-GAU · ON858856.1 · 101,417–102,435 bp · +
trnA-UGC · ON858856.1 · 102,500–103,378 bp · +
rrn23 · ON858856.1 · 103,550–106,360 bp · +
rrn4.5 · ON858856.1 · 106,459–106,561 bp · +
rrn5 · ON858856.1 · 106,817–106,937 bp · +
trnR-ACG · ON858856.1 · 107,181–107,254 bp · +
ycf1 · ON858856.1 · 108,234–109,364 bp · +
rpl32 · ON858856.1 · 111,965–112,135 bp · +
trnL-UAG · ON858856.1 · 112,899–112,978 bp · +
ccsA · ON858856.1 · 113,067–114,038 bp · +
trnN-GUU · ON858856.1 · 128,375–128,446 bp · +
rps7 · ON858856.1 · 139,444–139,911 bp · +
ndhB · ON858856.1 · 140,182–142,389 bp · +
trnL-CAA · ON858856.1 · 142,961–143,041 bp · +
trnI-CAU · ON858856.1 · 150,566–150,639 bp · +
rpl23 · ON858856.1 · 150,805–151,086 bp · +
rpl2 · ON858856.1 · 151,105–152,583 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Isodon grandifolius var. atuntzeensis
ANNOTATED PLASTOME
ON858856.1
152,693 bp · 132 genes
Gene function
Transfer RNA
Photosystem II
Other
ATP synthase
Ribosomal protein
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38173 76346 114520 152693 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
133 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 11 85 75 Locate
psbA gene − 389 1447 1059 Locate
trnK-UUU gene − 1679 4259 2581 Locate
matK gene − 1999 3519 1521 Locate
trnQ-UUG gene − 6875 6946 72 Locate
psbK gene + 7340 7525 186 Locate
psbI gene + 7913 8023 111 Locate
trnS-GCU gene − 8178 8265 88 Locate
trnG-UCC gene + 9035 9794 760 Locate
trnR-UCU gene + 9985 10056 72 Locate
atpA gene − 10160 11683 1524 Locate
atpF gene − 11794 13039 1246 Locate
atpH gene − 13331 13576 246 Locate
atpI gene − 14577 15320 744 Locate
rps2 gene − 15546 16256 711 Locate
rpoC2 gene − 16473 20654 4182 Locate
rpoC1 gene − 20819 23652 2834 Locate
rpoB gene − 23679 26891 3213 Locate
trnC-GCA gene + 28075 28145 71 Locate
petN gene + 28308 28397 90 Locate
psbM gene − 29389 29493 105 Locate
trnD-GUC gene − 30012 30085 74 Locate
trnY-GUA gene − 30196 30279 84 Locate
trnE-UUC gene − 30357 30429 73 Locate
trnT-GGU gene + 31039 31110 72 Locate
psbD gene + 32428 33489 1062 Locate
psbC gene + 33437 34858 1422 Locate
trnS-UGA gene − 35094 35186 93 Locate
psbZ gene + 35527 35715 189 Locate
trnG-GCC gene + 35960 36030 71 Locate
trnfM-CAU gene − 36218 36291 74 Locate
rps14 gene − 36437 36739 303 Locate
psaB gene − 36862 39066 2205 Locate
psaA gene − 39092 41344 2253 Locate
ycf3 gene − 42116 44062 1947 Locate
trnS-GGA gene + 44926 45012 87 Locate
rps4 gene − 45309 45914 606 Locate
trnT-UGU gene − 46339 46411 73 Locate
trnL-UAA gene + 47098 47662 565 Locate
trnF-GAA gene + 47956 48028 73 Locate
ndhJ gene − 48696 49172 477 Locate
ndhK gene − 49319 49960 642 Locate
ndhC gene − 50012 50374 363 Locate
trnV-UAC gene − 51331 51987 657 Locate
trnM-CAU gene + 52168 52240 73 Locate
atpE gene − 52441 52842 402 Locate
atpB gene − 52839 54335 1497 Locate
rbcL gene + 55127 56560 1434 Locate
accD gene + 57265 58746 1482 Locate
psaI gene + 59447 59557 111 Locate
ycf4 gene + 60005 60559 555 Locate
cemA gene + 61150 61839 690 Locate
petA gene + 62054 63016 963 Locate
psbJ gene − 64062 64184 123 Locate
psbL gene − 64319 64435 117 Locate
psbF gene − 64459 64578 120 Locate
psbE gene − 64593 64844 252 Locate
petL gene + 65737 65832 96 Locate
petG gene + 66007 66120 114 Locate
trnW-CCA gene − 66243 66316 74 Locate
trnP-UGG gene − 66485 66558 74 Locate
psaJ gene + 66845 66979 135 Locate
rpl33 gene + 67442 67642 201 Locate
rps18 gene + 67809 68114 306 Locate
rpl20 gene − 68349 68735 387 Locate
rps12 gene − 69469 69582 114 Locate
clpP gene − 69701 71615 1915 Locate
psbB gene + 72088 73614 1527 Locate
psbT gene + 73799 73900 102 Locate
psbN gene − 73966 74097 132 Locate
psbH gene + 74203 74421 219 Locate
petB gene + 74547 75915 1369 Locate
petD gene + 76104 77296 1193 Locate
rpoA gene − 77473 78480 1008 Locate
rps11 gene − 78552 78968 417 Locate
rpl36 gene − 79084 79197 114 Locate
infA gene − 79293 79526 234 Locate
rps8 gene − 79653 80057 405 Locate
rpl14 gene − 80240 80608 369 Locate
rpl16 gene − 80742 82009 1268 Locate
rps3 gene − 82153 82815 663 Locate
rpl22 gene − 82800 83273 474 Locate
rps19 gene − 83338 83616 279 Locate
rpl2 gene − 83684 85162 1479 Locate
rpl23 gene − 85181 85462 282 Locate
trnI-CAU gene − 85628 85701 74 Locate
ycf2 gene + 85796 92626 6831 Locate
ycf15 gene + 92816 92965 150 Locate
trnL-CAA gene − 93226 93306 81 Locate
ndhB gene − 93878 96085 2208 Locate
rps7 gene − 96356 96823 468 Locate
rps12 gene − 96877 97669 793 Locate
trnV-GAC gene + 99331 99402 72 Locate
rrn16 gene + 99629 101119 1491 Locate
trnI-GAU gene + 101417 102435 1019 Locate
trnA-UGC gene + 102500 103378 879 Locate
rrn23 gene + 103550 106360 2811 Locate
rrn4.5 gene + 106459 106561 103 Locate
rrn5 gene + 106817 106937 121 Locate
trnR-ACG gene + 107181 107254 74 Locate
trnN-GUU gene − 107821 107892 72 Locate
ycf1 gene + 108234 109364 1131 Locate
ndhF gene − 109258 111489 2232 Locate
rpl32 gene + 111965 112135 171 Locate
trnL-UAG gene + 112899 112978 80 Locate
ccsA gene + 113067 114038 972 Locate
ndhD gene − 114271 115800 1530 Locate
psaC gene − 115891 116136 246 Locate
ndhE gene − 116392 116697 306 Locate
ndhG gene − 116912 117442 531 Locate
ndhI gene − 117801 118307 507 Locate
ndhA gene − 118388 120511 2124 Locate
ndhH gene − 120513 121694 1182 Locate
rps15 gene − 121809 122081 273 Locate
ycf1 gene − 122511 128033 5523 Locate
trnN-GUU gene + 128375 128446 72 Locate
trnR-ACG gene − 129013 129086 74 Locate
rrn5 gene − 129330 129450 121 Locate
rrn4.5 gene − 129706 129808 103 Locate
rrn23 gene − 129907 132717 2811 Locate
trnA-UGC gene − 132889 133767 879 Locate
trnI-GAU gene − 133832 134850 1019 Locate
rrn16 gene − 135148 136638 1491 Locate
trnV-GAC gene − 136865 136936 72 Locate
rps12 gene + 138598 139390 793 Locate
rps7 gene + 139444 139911 468 Locate
ndhB gene + 140182 142389 2208 Locate
trnL-CAA gene + 142961 143041 81 Locate
ycf15 gene − 143302 143451 150 Locate
ycf2 gene − 143641 150471 6831 Locate
trnI-CAU gene + 150566 150639 74 Locate
rpl23 gene + 150805 151086 282 Locate
rpl2 gene + 151105 152583 1479 Locate
Status Available
Accession ON858856.1
Length 152,693 bp
GC content 37.6%
Annotated genes 132
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Atp Synthase 6 Ribosomal Protein 25 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources