Isodon grandifolius var. grandifolius chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · ON858868.1 · 11–85 bp · −
psbA · ON858868.1 · 393–1,451 bp · −
trnK-UUU · ON858868.1 · 1,683–4,263 bp · −
matK · ON858868.1 · 2,003–3,523 bp · −
trnQ-UUG · ON858868.1 · 6,876–6,947 bp · −
trnS-GCU · ON858868.1 · 8,178–8,265 bp · −
atpA · ON858868.1 · 10,153–11,676 bp · −
atpF · ON858868.1 · 11,778–13,023 bp · −
atpH · ON858868.1 · 13,315–13,560 bp · −
atpI · ON858868.1 · 14,561–15,304 bp · −
rps2 · ON858868.1 · 15,531–16,241 bp · −
rpoC2 · ON858868.1 · 16,456–20,637 bp · −
rpoC1 · ON858868.1 · 20,802–23,635 bp · −
rpoB · ON858868.1 · 23,662–26,874 bp · −
psbM · ON858868.1 · 29,361–29,465 bp · −
trnD-GUC · ON858868.1 · 29,949–30,022 bp · −
trnY-GUA · ON858868.1 · 30,133–30,216 bp · −
trnE-UUC · ON858868.1 · 30,294–30,366 bp · −
trnS-UGA · ON858868.1 · 35,031–35,123 bp · −
trnfM-CAU · ON858868.1 · 36,156–36,229 bp · −
rps14 · ON858868.1 · 36,375–36,677 bp · −
psaB · ON858868.1 · 36,800–39,004 bp · −
psaA · ON858868.1 · 39,030–41,282 bp · −
ycf3 · ON858868.1 · 42,056–44,003 bp · −
rps4 · ON858868.1 · 45,250–45,855 bp · −
trnT-UGU · ON858868.1 · 46,279–46,351 bp · −
ndhJ · ON858868.1 · 48,622–49,098 bp · −
ndhK · ON858868.1 · 49,209–49,886 bp · −
ndhC · ON858868.1 · 49,938–50,300 bp · −
trnV-UAC · ON858868.1 · 51,257–51,912 bp · −
atpE · ON858868.1 · 52,366–52,767 bp · −
atpB · ON858868.1 · 52,764–54,260 bp · −
psbJ · ON858868.1 · 63,980–64,102 bp · −
psbL · ON858868.1 · 64,237–64,353 bp · −
psbF · ON858868.1 · 64,377–64,496 bp · −
psbE · ON858868.1 · 64,511–64,762 bp · −
trnW-CCA · ON858868.1 · 66,161–66,234 bp · −
trnP-UGG · ON858868.1 · 66,403–66,476 bp · −
rpl20 · ON858868.1 · 68,260–68,646 bp · −
rps12 · ON858868.1 · 69,382–69,495 bp · −
rps12 · ON858868.1 · 96,781–97,573 bp · −
clpP · ON858868.1 · 69,614–71,529 bp · −
psbN · ON858868.1 · 73,880–74,011 bp · −
rpoA · ON858868.1 · 77,386–78,393 bp · −
rps11 · ON858868.1 · 78,465–78,881 bp · −
rpl36 · ON858868.1 · 78,997–79,110 bp · −
infA · ON858868.1 · 79,206–79,439 bp · −
rps8 · ON858868.1 · 79,566–79,970 bp · −
rpl14 · ON858868.1 · 80,153–80,521 bp · −
rpl16 · ON858868.1 · 80,655–81,922 bp · −
rps3 · ON858868.1 · 82,066–82,728 bp · −
rpl22 · ON858868.1 · 82,713–83,186 bp · −
rps19 · ON858868.1 · 83,251–83,529 bp · −
rpl2 · ON858868.1 · 83,597–85,075 bp · −
rpl23 · ON858868.1 · 85,094–85,375 bp · −
trnI-CAU · ON858868.1 · 85,541–85,614 bp · −
trnL-CAA · ON858868.1 · 93,130–93,210 bp · −
ndhB · ON858868.1 · 93,782–95,989 bp · −
rps7 · ON858868.1 · 96,260–96,727 bp · −
trnN-GUU · ON858868.1 · 107,720–107,791 bp · −
ndhF · ON858868.1 · 109,157–111,388 bp · −
ndhD · ON858868.1 · 114,162–115,691 bp · −
psaC · ON858868.1 · 115,782–116,027 bp · −
ndhE · ON858868.1 · 116,283–116,588 bp · −
ndhG · ON858868.1 · 116,803–117,333 bp · −
ndhI · ON858868.1 · 117,693–118,199 bp · −
ndhA · ON858868.1 · 118,280–120,403 bp · −
ndhH · ON858868.1 · 120,405–121,586 bp · −
rps15 · ON858868.1 · 121,701–121,973 bp · −
ycf1 · ON858868.1 · 122,403–127,931 bp · −
trnR-ACG · ON858868.1 · 128,911–128,984 bp · −
rrn5 · ON858868.1 · 129,228–129,348 bp · −
rrn4.5 · ON858868.1 · 129,604–129,706 bp · −
rrn23 · ON858868.1 · 129,805–132,615 bp · −
trnA-UGC · ON858868.1 · 132,787–133,665 bp · −
trnI-GAU · ON858868.1 · 133,730–134,748 bp · −
rrn16 · ON858868.1 · 135,046–136,536 bp · −
trnV-GAC · ON858868.1 · 136,763–136,834 bp · −
ycf15 · ON858868.1 · 143,195–143,344 bp · −
ycf2 · ON858868.1 · 143,534–150,355 bp · −
psbK · ON858868.1 · 7,341–7,526 bp · +
psbI · ON858868.1 · 7,913–8,023 bp · +
trnG-UCC · ON858868.1 · 9,027–9,787 bp · +
trnR-UCU · ON858868.1 · 9,978–10,049 bp · +
trnC-GCA · ON858868.1 · 28,064–28,134 bp · +
petN · ON858868.1 · 28,297–28,386 bp · +
trnT-GGU · ON858868.1 · 30,976–31,047 bp · +
psbD · ON858868.1 · 32,365–33,426 bp · +
psbC · ON858868.1 · 33,374–34,795 bp · +
psbZ · ON858868.1 · 35,464–35,652 bp · +
trnG-GCC · ON858868.1 · 35,897–35,967 bp · +
trnS-GGA · ON858868.1 · 44,867–44,953 bp · +
trnL-UAA · ON858868.1 · 47,045–47,588 bp · +
trnF-GAA · ON858868.1 · 47,882–47,954 bp · +
trnM-CAU · ON858868.1 · 52,093–52,165 bp · +
rbcL · ON858868.1 · 55,052–56,485 bp · +
accD · ON858868.1 · 57,190–58,671 bp · +
psaI · ON858868.1 · 59,373–59,483 bp · +
ycf4 · ON858868.1 · 59,930–60,484 bp · +
cemA · ON858868.1 · 61,075–61,764 bp · +
petA · ON858868.1 · 61,979–62,941 bp · +
petL · ON858868.1 · 65,655–65,750 bp · +
petG · ON858868.1 · 65,925–66,038 bp · +
psaJ · ON858868.1 · 66,758–66,892 bp · +
rpl33 · ON858868.1 · 67,354–67,554 bp · +
rps18 · ON858868.1 · 67,721–68,026 bp · +
rps12 · ON858868.1 · 138,491–139,283 bp · +
psbB · ON858868.1 · 72,002–73,528 bp · +
psbT · ON858868.1 · 73,713–73,814 bp · +
psbH · ON858868.1 · 74,117–74,335 bp · +
petB · ON858868.1 · 74,461–75,828 bp · +
petD · ON858868.1 · 76,017–77,209 bp · +
ycf2 · ON858868.1 · 85,709–92,530 bp · +
ycf15 · ON858868.1 · 92,720–92,869 bp · +
trnV-GAC · ON858868.1 · 99,230–99,301 bp · +
rrn16 · ON858868.1 · 99,528–101,018 bp · +
trnI-GAU · ON858868.1 · 101,316–102,334 bp · +
trnA-UGC · ON858868.1 · 102,399–103,277 bp · +
rrn23 · ON858868.1 · 103,449–106,259 bp · +
rrn4.5 · ON858868.1 · 106,358–106,460 bp · +
rrn5 · ON858868.1 · 106,716–106,836 bp · +
trnR-ACG · ON858868.1 · 107,080–107,153 bp · +
ycf1 · ON858868.1 · 108,133–109,263 bp · +
rpl32 · ON858868.1 · 111,857–112,027 bp · +
trnL-UAG · ON858868.1 · 112,791–112,870 bp · +
ccsA · ON858868.1 · 112,959–113,930 bp · +
trnN-GUU · ON858868.1 · 128,273–128,344 bp · +
rps7 · ON858868.1 · 139,337–139,804 bp · +
ndhB · ON858868.1 · 140,075–142,282 bp · +
trnL-CAA · ON858868.1 · 142,854–142,934 bp · +
trnI-CAU · ON858868.1 · 150,450–150,523 bp · +
rpl23 · ON858868.1 · 150,689–150,970 bp · +
rpl2 · ON858868.1 · 150,989–152,467 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Isodon grandifolius var. grandifolius
ANNOTATED PLASTOME
ON858868.1
152,577 bp · 132 genes
Gene function
Transfer RNA
Photosystem II
Other
ATP synthase
Ribosomal protein
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38144 76288 114433 152577 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
133 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 11 85 75 Locate
psbA gene − 393 1451 1059 Locate
trnK-UUU gene − 1683 4263 2581 Locate
matK gene − 2003 3523 1521 Locate
trnQ-UUG gene − 6876 6947 72 Locate
psbK gene + 7341 7526 186 Locate
psbI gene + 7913 8023 111 Locate
trnS-GCU gene − 8178 8265 88 Locate
trnG-UCC gene + 9027 9787 761 Locate
trnR-UCU gene + 9978 10049 72 Locate
atpA gene − 10153 11676 1524 Locate
atpF gene − 11778 13023 1246 Locate
atpH gene − 13315 13560 246 Locate
atpI gene − 14561 15304 744 Locate
rps2 gene − 15531 16241 711 Locate
rpoC2 gene − 16456 20637 4182 Locate
rpoC1 gene − 20802 23635 2834 Locate
rpoB gene − 23662 26874 3213 Locate
trnC-GCA gene + 28064 28134 71 Locate
petN gene + 28297 28386 90 Locate
psbM gene − 29361 29465 105 Locate
trnD-GUC gene − 29949 30022 74 Locate
trnY-GUA gene − 30133 30216 84 Locate
trnE-UUC gene − 30294 30366 73 Locate
trnT-GGU gene + 30976 31047 72 Locate
psbD gene + 32365 33426 1062 Locate
psbC gene + 33374 34795 1422 Locate
trnS-UGA gene − 35031 35123 93 Locate
psbZ gene + 35464 35652 189 Locate
trnG-GCC gene + 35897 35967 71 Locate
trnfM-CAU gene − 36156 36229 74 Locate
rps14 gene − 36375 36677 303 Locate
psaB gene − 36800 39004 2205 Locate
psaA gene − 39030 41282 2253 Locate
ycf3 gene − 42056 44003 1948 Locate
trnS-GGA gene + 44867 44953 87 Locate
rps4 gene − 45250 45855 606 Locate
trnT-UGU gene − 46279 46351 73 Locate
trnL-UAA gene + 47045 47588 544 Locate
trnF-GAA gene + 47882 47954 73 Locate
ndhJ gene − 48622 49098 477 Locate
ndhK gene − 49209 49886 678 Locate
ndhC gene − 49938 50300 363 Locate
trnV-UAC gene − 51257 51912 656 Locate
trnM-CAU gene + 52093 52165 73 Locate
atpE gene − 52366 52767 402 Locate
atpB gene − 52764 54260 1497 Locate
rbcL gene + 55052 56485 1434 Locate
accD gene + 57190 58671 1482 Locate
psaI gene + 59373 59483 111 Locate
ycf4 gene + 59930 60484 555 Locate
cemA gene + 61075 61764 690 Locate
petA gene + 61979 62941 963 Locate
psbJ gene − 63980 64102 123 Locate
psbL gene − 64237 64353 117 Locate
psbF gene − 64377 64496 120 Locate
psbE gene − 64511 64762 252 Locate
petL gene + 65655 65750 96 Locate
petG gene + 65925 66038 114 Locate
trnW-CCA gene − 66161 66234 74 Locate
trnP-UGG gene − 66403 66476 74 Locate
psaJ gene + 66758 66892 135 Locate
rpl33 gene + 67354 67554 201 Locate
rps18 gene + 67721 68026 306 Locate
rpl20 gene − 68260 68646 387 Locate
rps12 gene − 69382 69495 114 Locate
clpP gene − 69614 71529 1916 Locate
psbB gene + 72002 73528 1527 Locate
psbT gene + 73713 73814 102 Locate
psbN gene − 73880 74011 132 Locate
psbH gene + 74117 74335 219 Locate
petB gene + 74461 75828 1368 Locate
petD gene + 76017 77209 1193 Locate
rpoA gene − 77386 78393 1008 Locate
rps11 gene − 78465 78881 417 Locate
rpl36 gene − 78997 79110 114 Locate
infA gene − 79206 79439 234 Locate
rps8 gene − 79566 79970 405 Locate
rpl14 gene − 80153 80521 369 Locate
rpl16 gene − 80655 81922 1268 Locate
rps3 gene − 82066 82728 663 Locate
rpl22 gene − 82713 83186 474 Locate
rps19 gene − 83251 83529 279 Locate
rpl2 gene − 83597 85075 1479 Locate
rpl23 gene − 85094 85375 282 Locate
trnI-CAU gene − 85541 85614 74 Locate
ycf2 gene + 85709 92530 6822 Locate
ycf15 gene + 92720 92869 150 Locate
trnL-CAA gene − 93130 93210 81 Locate
ndhB gene − 93782 95989 2208 Locate
rps7 gene − 96260 96727 468 Locate
rps12 gene − 96781 97573 793 Locate
trnV-GAC gene + 99230 99301 72 Locate
rrn16 gene + 99528 101018 1491 Locate
trnI-GAU gene + 101316 102334 1019 Locate
trnA-UGC gene + 102399 103277 879 Locate
rrn23 gene + 103449 106259 2811 Locate
rrn4.5 gene + 106358 106460 103 Locate
rrn5 gene + 106716 106836 121 Locate
trnR-ACG gene + 107080 107153 74 Locate
trnN-GUU gene − 107720 107791 72 Locate
ycf1 gene + 108133 109263 1131 Locate
ndhF gene − 109157 111388 2232 Locate
rpl32 gene + 111857 112027 171 Locate
trnL-UAG gene + 112791 112870 80 Locate
ccsA gene + 112959 113930 972 Locate
ndhD gene − 114162 115691 1530 Locate
psaC gene − 115782 116027 246 Locate
ndhE gene − 116283 116588 306 Locate
ndhG gene − 116803 117333 531 Locate
ndhI gene − 117693 118199 507 Locate
ndhA gene − 118280 120403 2124 Locate
ndhH gene − 120405 121586 1182 Locate
rps15 gene − 121701 121973 273 Locate
ycf1 gene − 122403 127931 5529 Locate
trnN-GUU gene + 128273 128344 72 Locate
trnR-ACG gene − 128911 128984 74 Locate
rrn5 gene − 129228 129348 121 Locate
rrn4.5 gene − 129604 129706 103 Locate
rrn23 gene − 129805 132615 2811 Locate
trnA-UGC gene − 132787 133665 879 Locate
trnI-GAU gene − 133730 134748 1019 Locate
rrn16 gene − 135046 136536 1491 Locate
trnV-GAC gene − 136763 136834 72 Locate
rps12 gene + 138491 139283 793 Locate
rps7 gene + 139337 139804 468 Locate
ndhB gene + 140075 142282 2208 Locate
trnL-CAA gene + 142854 142934 81 Locate
ycf15 gene − 143195 143344 150 Locate
ycf2 gene − 143534 150355 6822 Locate
trnI-CAU gene + 150450 150523 74 Locate
rpl23 gene + 150689 150970 282 Locate
rpl2 gene + 150989 152467 1479 Locate
Status Available
Accession ON858868.1
Length 152,577 bp
GC content 37.6%
Annotated genes 132
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Atp Synthase 6 Ribosomal Protein 25 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources