Isodon hirtellus chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · NC_067661.1 · 11–85 bp · −
psbA · NC_067661.1 · 393–1,451 bp · −
trnK-UUU · NC_067661.1 · 1,683–4,263 bp · −
matK · NC_067661.1 · 2,003–3,523 bp · −
OOC82_pgp086 · NC_067661.1 · 4,790–5,935 bp · −
trnQ-UUG · NC_067661.1 · 6,881–6,952 bp · −
trnS-GCU · NC_067661.1 · 8,185–8,272 bp · −
atpA · NC_067661.1 · 10,176–11,699 bp · −
atpF · NC_067661.1 · 11,809–13,054 bp · −
atpH · NC_067661.1 · 13,346–13,591 bp · −
atpI · NC_067661.1 · 14,544–15,287 bp · −
rps2 · NC_067661.1 · 15,513–16,223 bp · −
rpoC2 · NC_067661.1 · 16,439–20,620 bp · −
rpoC1 · NC_067661.1 · 20,785–23,618 bp · −
rpoB · NC_067661.1 · 23,645–26,857 bp · −
psbM · NC_067661.1 · 29,379–29,483 bp · −
trnD-GUC · NC_067661.1 · 30,002–30,075 bp · −
trnY-GUA · NC_067661.1 · 30,186–30,269 bp · −
trnE-UUC · NC_067661.1 · 30,347–30,419 bp · −
trnS-UGA · NC_067661.1 · 35,090–35,182 bp · −
trnfM-CAU · NC_067661.1 · 36,215–36,288 bp · −
rps14 · NC_067661.1 · 36,434–36,736 bp · −
psaB · NC_067661.1 · 36,859–39,063 bp · −
psaA · NC_067661.1 · 39,089–41,341 bp · −
ycf3 · NC_067661.1 · 42,109–44,049 bp · −
rps4 · NC_067661.1 · 45,296–45,901 bp · −
trnT-UGU · NC_067661.1 · 46,325–46,397 bp · −
ndhJ · NC_067661.1 · 48,634–49,110 bp · −
ndhK · NC_067661.1 · 49,221–49,898 bp · −
ndhC · NC_067661.1 · 49,950–50,312 bp · −
trnV-UAC · NC_067661.1 · 51,269–51,924 bp · −
atpE · NC_067661.1 · 52,378–52,779 bp · −
atpB · NC_067661.1 · 52,776–54,272 bp · −
psbJ · NC_067661.1 · 63,990–64,112 bp · −
psbL · NC_067661.1 · 64,247–64,363 bp · −
psbF · NC_067661.1 · 64,387–64,506 bp · −
psbE · NC_067661.1 · 64,521–64,772 bp · −
trnW-CCA · NC_067661.1 · 66,177–66,250 bp · −
trnP-UGG · NC_067661.1 · 66,419–66,492 bp · −
rpl20 · NC_067661.1 · 68,279–68,665 bp · −
rps12 · NC_067661.1 · 69,400–69,513 bp · −
rps12 · NC_067661.1 · 96,806–97,598 bp · −
clpP · NC_067661.1 · 69,632–71,548 bp · −
psbN · NC_067661.1 · 73,899–74,030 bp · −
rpoA · NC_067661.1 · 77,401–78,408 bp · −
rps11 · NC_067661.1 · 78,480–78,896 bp · −
rpl36 · NC_067661.1 · 79,012–79,125 bp · −
infA · NC_067661.1 · 79,221–79,454 bp · −
rps8 · NC_067661.1 · 79,582–79,986 bp · −
rpl14 · NC_067661.1 · 80,169–80,537 bp · −
rpl16 · NC_067661.1 · 80,671–81,938 bp · −
rps3 · NC_067661.1 · 82,082–82,744 bp · −
rpl22 · NC_067661.1 · 82,729–83,202 bp · −
rps19 · NC_067661.1 · 83,267–83,545 bp · −
rpl2 · NC_067661.1 · 83,613–85,091 bp · −
rpl23 · NC_067661.1 · 85,110–85,391 bp · −
trnI-CAU · NC_067661.1 · 85,557–85,630 bp · −
trnL-CAA · NC_067661.1 · 93,155–93,235 bp · −
ndhB · NC_067661.1 · 93,807–96,014 bp · −
rps7 · NC_067661.1 · 96,285–96,752 bp · −
trnN-GUU · NC_067661.1 · 107,750–107,821 bp · −
ndhF · NC_067661.1 · 109,187–111,424 bp · −
ndhD · NC_067661.1 · 114,198–115,727 bp · −
psaC · NC_067661.1 · 115,818–116,063 bp · −
ndhE · NC_067661.1 · 116,319–116,624 bp · −
ndhG · NC_067661.1 · 116,838–117,368 bp · −
ndhI · NC_067661.1 · 117,728–118,234 bp · −
ndhA · NC_067661.1 · 118,315–120,431 bp · −
ndhH · NC_067661.1 · 120,433–121,614 bp · −
rps15 · NC_067661.1 · 121,729–122,001 bp · −
ycf1 · NC_067661.1 · 122,441–127,963 bp · −
trnR-ACG · NC_067661.1 · 128,943–129,016 bp · −
rrn5 · NC_067661.1 · 129,260–129,380 bp · −
rrn4.5 · NC_067661.1 · 129,636–129,738 bp · −
rrn23 · NC_067661.1 · 129,837–132,647 bp · −
trnA-UGC · NC_067661.1 · 132,819–133,697 bp · −
trnI-GAU · NC_067661.1 · 133,762–134,780 bp · −
rrn16 · NC_067661.1 · 135,078–136,568 bp · −
trnV-GAC · NC_067661.1 · 136,795–136,866 bp · −
ycf15 · NC_067661.1 · 143,232–143,381 bp · −
ycf2 · NC_067661.1 · 143,571–150,401 bp · −
psbK · NC_067661.1 · 7,346–7,531 bp · +
psbI · NC_067661.1 · 7,919–8,029 bp · +
trnG-UCC · NC_067661.1 · 9,041–9,804 bp · +
trnR-UCU · NC_067661.1 · 10,001–10,072 bp · +
trnC-GCA · NC_067661.1 · 28,064–28,134 bp · +
petN · NC_067661.1 · 28,297–28,386 bp · +
trnT-GGU · NC_067661.1 · 31,034–31,105 bp · +
psbD · NC_067661.1 · 32,423–33,484 bp · +
psbC · NC_067661.1 · 33,432–34,853 bp · +
psbZ · NC_067661.1 · 35,523–35,711 bp · +
trnG-GCC · NC_067661.1 · 35,956–36,026 bp · +
trnS-GGA · NC_067661.1 · 44,913–44,999 bp · +
trnL-UAA · NC_067661.1 · 47,084–47,627 bp · +
trnF-GAA · NC_067661.1 · 47,921–47,993 bp · +
trnM-CAU · NC_067661.1 · 52,105–52,177 bp · +
rbcL · NC_067661.1 · 55,063–56,496 bp · +
accD · NC_067661.1 · 57,201–58,682 bp · +
psaI · NC_067661.1 · 59,383–59,493 bp · +
ycf4 · NC_067661.1 · 59,940–60,494 bp · +
cemA · NC_067661.1 · 61,085–61,774 bp · +
petA · NC_067661.1 · 61,989–62,951 bp · +
petL · NC_067661.1 · 65,671–65,766 bp · +
petG · NC_067661.1 · 65,941–66,054 bp · +
psaJ · NC_067661.1 · 66,774–66,908 bp · +
rpl33 · NC_067661.1 · 67,371–67,571 bp · +
rps18 · NC_067661.1 · 67,738–68,043 bp · +
rps12 · NC_067661.1 · 138,528–139,320 bp · +
psbB · NC_067661.1 · 72,021–73,547 bp · +
psbT · NC_067661.1 · 73,732–73,833 bp · +
psbH · NC_067661.1 · 74,136–74,354 bp · +
petB · NC_067661.1 · 74,480–75,843 bp · +
petD · NC_067661.1 · 76,032–77,224 bp · +
ycf2 · NC_067661.1 · 85,725–92,555 bp · +
ycf15 · NC_067661.1 · 92,745–92,894 bp · +
trnV-GAC · NC_067661.1 · 99,260–99,331 bp · +
rrn16 · NC_067661.1 · 99,558–101,048 bp · +
trnI-GAU · NC_067661.1 · 101,346–102,364 bp · +
trnA-UGC · NC_067661.1 · 102,429–103,307 bp · +
rrn23 · NC_067661.1 · 103,479–106,289 bp · +
rrn4.5 · NC_067661.1 · 106,388–106,490 bp · +
rrn5 · NC_067661.1 · 106,746–106,866 bp · +
trnR-ACG · NC_067661.1 · 107,110–107,183 bp · +
ycf1 · NC_067661.1 · 108,163–109,293 bp · +
rpl32 · NC_067661.1 · 111,893–112,063 bp · +
trnL-UAG · NC_067661.1 · 112,827–112,906 bp · +
ccsA · NC_067661.1 · 112,995–113,966 bp · +
trnN-GUU · NC_067661.1 · 128,305–128,376 bp · +
rps7 · NC_067661.1 · 139,374–139,841 bp · +
ndhB · NC_067661.1 · 140,112–142,319 bp · +
trnL-CAA · NC_067661.1 · 142,891–142,971 bp · +
trnI-CAU · NC_067661.1 · 150,496–150,569 bp · +
rpl23 · NC_067661.1 · 150,735–151,016 bp · +
rpl2 · NC_067661.1 · 151,035–152,513 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Isodon hirtellus
ANNOTATED PLASTOME
NC_067661.1
152,623 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
ATP synthase
Ribosomal protein
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38156 76312 114467 152623 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK OOC82_pgp086 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 11 85 75 Locate
psbA gene − 393 1451 1059 Locate
trnK-UUU gene − 1683 4263 2581 Locate
matK gene − 2003 3523 1521 Locate
OOC82_pgp086 gene − 4790 5935 1146 Locate
trnQ-UUG gene − 6881 6952 72 Locate
psbK gene + 7346 7531 186 Locate
psbI gene + 7919 8029 111 Locate
trnS-GCU gene − 8185 8272 88 Locate
trnG-UCC gene + 9041 9804 764 Locate
trnR-UCU gene + 10001 10072 72 Locate
atpA gene − 10176 11699 1524 Locate
atpF gene − 11809 13054 1246 Locate
atpH gene − 13346 13591 246 Locate
atpI gene − 14544 15287 744 Locate
rps2 gene − 15513 16223 711 Locate
rpoC2 gene − 16439 20620 4182 Locate
rpoC1 gene − 20785 23618 2834 Locate
rpoB gene − 23645 26857 3213 Locate
trnC-GCA gene + 28064 28134 71 Locate
petN gene + 28297 28386 90 Locate
psbM gene − 29379 29483 105 Locate
trnD-GUC gene − 30002 30075 74 Locate
trnY-GUA gene − 30186 30269 84 Locate
trnE-UUC gene − 30347 30419 73 Locate
trnT-GGU gene + 31034 31105 72 Locate
psbD gene + 32423 33484 1062 Locate
psbC gene + 33432 34853 1422 Locate
trnS-UGA gene − 35090 35182 93 Locate
psbZ gene + 35523 35711 189 Locate
trnG-GCC gene + 35956 36026 71 Locate
trnfM-CAU gene − 36215 36288 74 Locate
rps14 gene − 36434 36736 303 Locate
psaB gene − 36859 39063 2205 Locate
psaA gene − 39089 41341 2253 Locate
ycf3 gene − 42109 44049 1941 Locate
trnS-GGA gene + 44913 44999 87 Locate
rps4 gene − 45296 45901 606 Locate
trnT-UGU gene − 46325 46397 73 Locate
trnL-UAA gene + 47084 47627 544 Locate
trnF-GAA gene + 47921 47993 73 Locate
ndhJ gene − 48634 49110 477 Locate
ndhK gene − 49221 49898 678 Locate
ndhC gene − 49950 50312 363 Locate
trnV-UAC gene − 51269 51924 656 Locate
trnM-CAU gene + 52105 52177 73 Locate
atpE gene − 52378 52779 402 Locate
atpB gene − 52776 54272 1497 Locate
rbcL gene + 55063 56496 1434 Locate
accD gene + 57201 58682 1482 Locate
psaI gene + 59383 59493 111 Locate
ycf4 gene + 59940 60494 555 Locate
cemA gene + 61085 61774 690 Locate
petA gene + 61989 62951 963 Locate
psbJ gene − 63990 64112 123 Locate
psbL gene − 64247 64363 117 Locate
psbF gene − 64387 64506 120 Locate
psbE gene − 64521 64772 252 Locate
petL gene + 65671 65766 96 Locate
petG gene + 65941 66054 114 Locate
trnW-CCA gene − 66177 66250 74 Locate
trnP-UGG gene − 66419 66492 74 Locate
psaJ gene + 66774 66908 135 Locate
rpl33 gene + 67371 67571 201 Locate
rps18 gene + 67738 68043 306 Locate
rpl20 gene − 68279 68665 387 Locate
rps12 gene − 69400 69513 114 Locate
clpP gene − 69632 71548 1917 Locate
psbB gene + 72021 73547 1527 Locate
psbT gene + 73732 73833 102 Locate
psbN gene − 73899 74030 132 Locate
psbH gene + 74136 74354 219 Locate
petB gene + 74480 75843 1364 Locate
petD gene + 76032 77224 1193 Locate
rpoA gene − 77401 78408 1008 Locate
rps11 gene − 78480 78896 417 Locate
rpl36 gene − 79012 79125 114 Locate
infA gene − 79221 79454 234 Locate
rps8 gene − 79582 79986 405 Locate
rpl14 gene − 80169 80537 369 Locate
rpl16 gene − 80671 81938 1268 Locate
rps3 gene − 82082 82744 663 Locate
rpl22 gene − 82729 83202 474 Locate
rps19 gene − 83267 83545 279 Locate
rpl2 gene − 83613 85091 1479 Locate
rpl23 gene − 85110 85391 282 Locate
trnI-CAU gene − 85557 85630 74 Locate
ycf2 gene + 85725 92555 6831 Locate
ycf15 gene + 92745 92894 150 Locate
trnL-CAA gene − 93155 93235 81 Locate
ndhB gene − 93807 96014 2208 Locate
rps7 gene − 96285 96752 468 Locate
rps12 gene − 96806 97598 793 Locate
trnV-GAC gene + 99260 99331 72 Locate
rrn16 gene + 99558 101048 1491 Locate
trnI-GAU gene + 101346 102364 1019 Locate
trnA-UGC gene + 102429 103307 879 Locate
rrn23 gene + 103479 106289 2811 Locate
rrn4.5 gene + 106388 106490 103 Locate
rrn5 gene + 106746 106866 121 Locate
trnR-ACG gene + 107110 107183 74 Locate
trnN-GUU gene − 107750 107821 72 Locate
ycf1 gene + 108163 109293 1131 Locate
ndhF gene − 109187 111424 2238 Locate
rpl32 gene + 111893 112063 171 Locate
trnL-UAG gene + 112827 112906 80 Locate
ccsA gene + 112995 113966 972 Locate
ndhD gene − 114198 115727 1530 Locate
psaC gene − 115818 116063 246 Locate
ndhE gene − 116319 116624 306 Locate
ndhG gene − 116838 117368 531 Locate
ndhI gene − 117728 118234 507 Locate
ndhA gene − 118315 120431 2117 Locate
ndhH gene − 120433 121614 1182 Locate
rps15 gene − 121729 122001 273 Locate
ycf1 gene − 122441 127963 5523 Locate
trnN-GUU gene + 128305 128376 72 Locate
trnR-ACG gene − 128943 129016 74 Locate
rrn5 gene − 129260 129380 121 Locate
rrn4.5 gene − 129636 129738 103 Locate
rrn23 gene − 129837 132647 2811 Locate
trnA-UGC gene − 132819 133697 879 Locate
trnI-GAU gene − 133762 134780 1019 Locate
rrn16 gene − 135078 136568 1491 Locate
trnV-GAC gene − 136795 136866 72 Locate
rps12 gene + 138528 139320 793 Locate
rps7 gene + 139374 139841 468 Locate
ndhB gene + 140112 142319 2208 Locate
trnL-CAA gene + 142891 142971 81 Locate
ycf15 gene − 143232 143381 150 Locate
ycf2 gene − 143571 150401 6831 Locate
trnI-CAU gene + 150496 150569 74 Locate
rpl23 gene + 150735 151016 282 Locate
rpl2 gene + 151035 152513 1479 Locate
Status Available
Accession NC_067661.1
Length 152,623 bp
GC content 37.6%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 16 Atp Synthase 6 Ribosomal Protein 25 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources