Isodon hsiwenii chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · ON858858.1 · 11–85 bp · −
psbA · ON858858.1 · 393–1,451 bp · −
trnK-UUU · ON858858.1 · 1,683–4,264 bp · −
matK · ON858858.1 · 2,004–3,524 bp · −
trnQ-UUG · ON858858.1 · 6,882–6,953 bp · −
trnS-GCU · ON858858.1 · 8,185–8,272 bp · −
atpA · ON858858.1 · 10,158–11,681 bp · −
atpF · ON858858.1 · 11,787–13,032 bp · −
atpH · ON858858.1 · 13,324–13,569 bp · −
atpI · ON858858.1 · 14,570–15,313 bp · −
rps2 · ON858858.1 · 15,539–16,249 bp · −
rpoC2 · ON858858.1 · 16,465–20,646 bp · −
rpoC1 · ON858858.1 · 20,811–23,644 bp · −
rpoB · ON858858.1 · 23,671–26,883 bp · −
psbM · ON858858.1 · 29,388–29,492 bp · −
trnD-GUC · ON858858.1 · 30,011–30,084 bp · −
trnY-GUA · ON858858.1 · 30,195–30,278 bp · −
trnE-UUC · ON858858.1 · 30,356–30,428 bp · −
trnS-UGA · ON858858.1 · 35,094–35,186 bp · −
trnfM-CAU · ON858858.1 · 36,218–36,291 bp · −
rps14 · ON858858.1 · 36,437–36,739 bp · −
psaB · ON858858.1 · 36,862–39,066 bp · −
psaA · ON858858.1 · 39,092–41,344 bp · −
ycf3 · ON858858.1 · 42,118–44,065 bp · −
rps4 · ON858858.1 · 45,312–45,917 bp · −
trnT-UGU · ON858858.1 · 46,342–46,414 bp · −
ndhJ · ON858858.1 · 48,674–49,150 bp · −
ndhK · ON858858.1 · 49,261–49,938 bp · −
ndhC · ON858858.1 · 49,990–50,352 bp · −
trnV-UAC · ON858858.1 · 51,309–51,964 bp · −
atpE · ON858858.1 · 52,418–52,819 bp · −
atpB · ON858858.1 · 52,816–54,312 bp · −
psbJ · ON858858.1 · 64,028–64,150 bp · −
psbL · ON858858.1 · 64,285–64,401 bp · −
psbF · ON858858.1 · 64,425–64,544 bp · −
psbE · ON858858.1 · 64,559–64,810 bp · −
trnW-CCA · ON858858.1 · 66,209–66,282 bp · −
trnP-UGG · ON858858.1 · 66,451–66,524 bp · −
rpl20 · ON858858.1 · 68,309–68,695 bp · −
rps12 · ON858858.1 · 69,430–69,543 bp · −
rps12 · ON858858.1 · 96,832–97,624 bp · −
clpP · ON858858.1 · 69,662–71,578 bp · −
psbN · ON858858.1 · 73,929–74,060 bp · −
rpoA · ON858858.1 · 77,434–78,441 bp · −
rps11 · ON858858.1 · 78,513–78,929 bp · −
rpl36 · ON858858.1 · 79,045–79,158 bp · −
infA · ON858858.1 · 79,254–79,487 bp · −
rps8 · ON858858.1 · 79,614–80,018 bp · −
rpl14 · ON858858.1 · 80,201–80,569 bp · −
rpl16 · ON858858.1 · 80,703–81,963 bp · −
rps3 · ON858858.1 · 82,107–82,769 bp · −
rpl22 · ON858858.1 · 82,754–83,227 bp · −
rps19 · ON858858.1 · 83,292–83,570 bp · −
rpl2 · ON858858.1 · 83,638–85,116 bp · −
rpl23 · ON858858.1 · 85,135–85,416 bp · −
trnI-CAU · ON858858.1 · 85,582–85,655 bp · −
trnL-CAA · ON858858.1 · 93,180–93,260 bp · −
ndhB · ON858858.1 · 93,832–96,039 bp · −
rps7 · ON858858.1 · 96,311–96,778 bp · −
trnN-GUU · ON858858.1 · 107,776–107,847 bp · −
ndhF · ON858858.1 · 109,213–111,444 bp · −
ndhD · ON858858.1 · 114,217–115,746 bp · −
psaC · ON858858.1 · 115,837–116,082 bp · −
ndhE · ON858858.1 · 116,338–116,643 bp · −
ndhG · ON858858.1 · 116,858–117,388 bp · −
ndhI · ON858858.1 · 117,748–118,254 bp · −
ndhA · ON858858.1 · 118,335–120,457 bp · −
ndhH · ON858858.1 · 120,459–121,640 bp · −
rps15 · ON858858.1 · 121,755–122,027 bp · −
ycf1 · ON858858.1 · 122,456–127,972 bp · −
trnR-ACG · ON858858.1 · 128,952–129,025 bp · −
rrn5 · ON858858.1 · 129,269–129,389 bp · −
rrn4.5 · ON858858.1 · 129,645–129,747 bp · −
rrn23 · ON858858.1 · 129,846–132,656 bp · −
trnA-UGC · ON858858.1 · 132,828–133,706 bp · −
trnI-GAU · ON858858.1 · 133,771–134,789 bp · −
rrn16 · ON858858.1 · 135,087–136,577 bp · −
trnV-GAC · ON858858.1 · 136,804–136,875 bp · −
ycf15 · ON858858.1 · 143,242–143,391 bp · −
ycf2 · ON858858.1 · 143,581–150,411 bp · −
psbK · ON858858.1 · 7,347–7,532 bp · +
psbI · ON858858.1 · 7,920–8,030 bp · +
trnG-UCC · ON858858.1 · 9,034–9,793 bp · +
trnR-UCU · ON858858.1 · 9,984–10,055 bp · +
trnC-GCA · ON858858.1 · 28,073–28,143 bp · +
petN · ON858858.1 · 28,306–28,395 bp · +
trnT-GGU · ON858858.1 · 31,038–31,109 bp · +
psbD · ON858858.1 · 32,427–33,488 bp · +
psbC · ON858858.1 · 33,436–34,857 bp · +
psbZ · ON858858.1 · 35,527–35,715 bp · +
trnG-GCC · ON858858.1 · 35,960–36,030 bp · +
trnS-GGA · ON858858.1 · 44,929–45,015 bp · +
trnL-UAA · ON858858.1 · 47,102–47,645 bp · +
trnF-GAA · ON858858.1 · 47,939–48,011 bp · +
trnM-CAU · ON858858.1 · 52,145–52,217 bp · +
rbcL · ON858858.1 · 55,104–56,537 bp · +
accD · ON858858.1 · 57,242–58,723 bp · +
psaI · ON858858.1 · 59,426–59,536 bp · +
ycf4 · ON858858.1 · 59,985–60,539 bp · +
cemA · ON858858.1 · 61,129–61,818 bp · +
petA · ON858858.1 · 62,033–62,995 bp · +
petL · ON858858.1 · 65,703–65,798 bp · +
petG · ON858858.1 · 65,973–66,086 bp · +
psaJ · ON858858.1 · 66,806–66,940 bp · +
rpl33 · ON858858.1 · 67,402–67,602 bp · +
rps18 · ON858858.1 · 67,769–68,074 bp · +
rps12 · ON858858.1 · 138,537–139,329 bp · +
psbB · ON858858.1 · 72,051–73,577 bp · +
psbT · ON858858.1 · 73,762–73,863 bp · +
psbH · ON858858.1 · 74,166–74,384 bp · +
petB · ON858858.1 · 74,510–75,876 bp · +
petD · ON858858.1 · 76,065–77,257 bp · +
ycf2 · ON858858.1 · 85,750–92,580 bp · +
ycf15 · ON858858.1 · 92,770–92,919 bp · +
trnV-GAC · ON858858.1 · 99,286–99,357 bp · +
rrn16 · ON858858.1 · 99,584–101,074 bp · +
trnI-GAU · ON858858.1 · 101,372–102,390 bp · +
trnA-UGC · ON858858.1 · 102,455–103,333 bp · +
rrn23 · ON858858.1 · 103,505–106,315 bp · +
rrn4.5 · ON858858.1 · 106,414–106,516 bp · +
rrn5 · ON858858.1 · 106,772–106,892 bp · +
trnR-ACG · ON858858.1 · 107,136–107,209 bp · +
ycf1 · ON858858.1 · 108,189–109,319 bp · +
rpl32 · ON858858.1 · 111,913–112,083 bp · +
trnL-UAG · ON858858.1 · 112,846–112,925 bp · +
ccsA · ON858858.1 · 113,014–113,985 bp · +
trnN-GUU · ON858858.1 · 128,314–128,385 bp · +
rps7 · ON858858.1 · 139,383–139,850 bp · +
ndhB · ON858858.1 · 140,122–142,329 bp · +
trnL-CAA · ON858858.1 · 142,901–142,981 bp · +
trnI-CAU · ON858858.1 · 150,506–150,579 bp · +
rpl23 · ON858858.1 · 150,745–151,026 bp · +
rpl2 · ON858858.1 · 151,045–152,523 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Isodon hsiwenii
ANNOTATED PLASTOME
ON858858.1
152,633 bp · 132 genes
Gene function
Transfer RNA
Photosystem II
Other
ATP synthase
Ribosomal protein
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38158 76316 114475 152633 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
133 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 11 85 75 Locate
psbA gene − 393 1451 1059 Locate
trnK-UUU gene − 1683 4264 2582 Locate
matK gene − 2004 3524 1521 Locate
trnQ-UUG gene − 6882 6953 72 Locate
psbK gene + 7347 7532 186 Locate
psbI gene + 7920 8030 111 Locate
trnS-GCU gene − 8185 8272 88 Locate
trnG-UCC gene + 9034 9793 760 Locate
trnR-UCU gene + 9984 10055 72 Locate
atpA gene − 10158 11681 1524 Locate
atpF gene − 11787 13032 1246 Locate
atpH gene − 13324 13569 246 Locate
atpI gene − 14570 15313 744 Locate
rps2 gene − 15539 16249 711 Locate
rpoC2 gene − 16465 20646 4182 Locate
rpoC1 gene − 20811 23644 2834 Locate
rpoB gene − 23671 26883 3213 Locate
trnC-GCA gene + 28073 28143 71 Locate
petN gene + 28306 28395 90 Locate
psbM gene − 29388 29492 105 Locate
trnD-GUC gene − 30011 30084 74 Locate
trnY-GUA gene − 30195 30278 84 Locate
trnE-UUC gene − 30356 30428 73 Locate
trnT-GGU gene + 31038 31109 72 Locate
psbD gene + 32427 33488 1062 Locate
psbC gene + 33436 34857 1422 Locate
trnS-UGA gene − 35094 35186 93 Locate
psbZ gene + 35527 35715 189 Locate
trnG-GCC gene + 35960 36030 71 Locate
trnfM-CAU gene − 36218 36291 74 Locate
rps14 gene − 36437 36739 303 Locate
psaB gene − 36862 39066 2205 Locate
psaA gene − 39092 41344 2253 Locate
ycf3 gene − 42118 44065 1948 Locate
trnS-GGA gene + 44929 45015 87 Locate
rps4 gene − 45312 45917 606 Locate
trnT-UGU gene − 46342 46414 73 Locate
trnL-UAA gene + 47102 47645 544 Locate
trnF-GAA gene + 47939 48011 73 Locate
ndhJ gene − 48674 49150 477 Locate
ndhK gene − 49261 49938 678 Locate
ndhC gene − 49990 50352 363 Locate
trnV-UAC gene − 51309 51964 656 Locate
trnM-CAU gene + 52145 52217 73 Locate
atpE gene − 52418 52819 402 Locate
atpB gene − 52816 54312 1497 Locate
rbcL gene + 55104 56537 1434 Locate
accD gene + 57242 58723 1482 Locate
psaI gene + 59426 59536 111 Locate
ycf4 gene + 59985 60539 555 Locate
cemA gene + 61129 61818 690 Locate
petA gene + 62033 62995 963 Locate
psbJ gene − 64028 64150 123 Locate
psbL gene − 64285 64401 117 Locate
psbF gene − 64425 64544 120 Locate
psbE gene − 64559 64810 252 Locate
petL gene + 65703 65798 96 Locate
petG gene + 65973 66086 114 Locate
trnW-CCA gene − 66209 66282 74 Locate
trnP-UGG gene − 66451 66524 74 Locate
psaJ gene + 66806 66940 135 Locate
rpl33 gene + 67402 67602 201 Locate
rps18 gene + 67769 68074 306 Locate
rpl20 gene − 68309 68695 387 Locate
rps12 gene − 69430 69543 114 Locate
clpP gene − 69662 71578 1917 Locate
psbB gene + 72051 73577 1527 Locate
psbT gene + 73762 73863 102 Locate
psbN gene − 73929 74060 132 Locate
psbH gene + 74166 74384 219 Locate
petB gene + 74510 75876 1367 Locate
petD gene + 76065 77257 1193 Locate
rpoA gene − 77434 78441 1008 Locate
rps11 gene − 78513 78929 417 Locate
rpl36 gene − 79045 79158 114 Locate
infA gene − 79254 79487 234 Locate
rps8 gene − 79614 80018 405 Locate
rpl14 gene − 80201 80569 369 Locate
rpl16 gene − 80703 81963 1261 Locate
rps3 gene − 82107 82769 663 Locate
rpl22 gene − 82754 83227 474 Locate
rps19 gene − 83292 83570 279 Locate
rpl2 gene − 83638 85116 1479 Locate
rpl23 gene − 85135 85416 282 Locate
trnI-CAU gene − 85582 85655 74 Locate
ycf2 gene + 85750 92580 6831 Locate
ycf15 gene + 92770 92919 150 Locate
trnL-CAA gene − 93180 93260 81 Locate
ndhB gene − 93832 96039 2208 Locate
rps7 gene − 96311 96778 468 Locate
rps12 gene − 96832 97624 793 Locate
trnV-GAC gene + 99286 99357 72 Locate
rrn16 gene + 99584 101074 1491 Locate
trnI-GAU gene + 101372 102390 1019 Locate
trnA-UGC gene + 102455 103333 879 Locate
rrn23 gene + 103505 106315 2811 Locate
rrn4.5 gene + 106414 106516 103 Locate
rrn5 gene + 106772 106892 121 Locate
trnR-ACG gene + 107136 107209 74 Locate
trnN-GUU gene − 107776 107847 72 Locate
ycf1 gene + 108189 109319 1131 Locate
ndhF gene − 109213 111444 2232 Locate
rpl32 gene + 111913 112083 171 Locate
trnL-UAG gene + 112846 112925 80 Locate
ccsA gene + 113014 113985 972 Locate
ndhD gene − 114217 115746 1530 Locate
psaC gene − 115837 116082 246 Locate
ndhE gene − 116338 116643 306 Locate
ndhG gene − 116858 117388 531 Locate
ndhI gene − 117748 118254 507 Locate
ndhA gene − 118335 120457 2123 Locate
ndhH gene − 120459 121640 1182 Locate
rps15 gene − 121755 122027 273 Locate
ycf1 gene − 122456 127972 5517 Locate
trnN-GUU gene + 128314 128385 72 Locate
trnR-ACG gene − 128952 129025 74 Locate
rrn5 gene − 129269 129389 121 Locate
rrn4.5 gene − 129645 129747 103 Locate
rrn23 gene − 129846 132656 2811 Locate
trnA-UGC gene − 132828 133706 879 Locate
trnI-GAU gene − 133771 134789 1019 Locate
rrn16 gene − 135087 136577 1491 Locate
trnV-GAC gene − 136804 136875 72 Locate
rps12 gene + 138537 139329 793 Locate
rps7 gene + 139383 139850 468 Locate
ndhB gene + 140122 142329 2208 Locate
trnL-CAA gene + 142901 142981 81 Locate
ycf15 gene − 143242 143391 150 Locate
ycf2 gene − 143581 150411 6831 Locate
trnI-CAU gene + 150506 150579 74 Locate
rpl23 gene + 150745 151026 282 Locate
rpl2 gene + 151045 152523 1479 Locate
Status Available
Accession ON858858.1
Length 152,633 bp
GC content 37.6%
Annotated genes 132
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Atp Synthase 6 Ribosomal Protein 25 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources