Isodon irroratus chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · NC_067663.1 · 11–85 bp · −
psbA · NC_067663.1 · 389–1,447 bp · −
trnK-UUU · NC_067663.1 · 1,679–4,259 bp · −
matK · NC_067663.1 · 1,999–3,519 bp · −
OOC32_pgp086 · NC_067663.1 · 4,784–5,929 bp · −
trnQ-UUG · NC_067663.1 · 6,875–6,946 bp · −
trnS-GCU · NC_067663.1 · 8,178–8,265 bp · −
atpA · NC_067663.1 · 10,152–11,675 bp · −
atpF · NC_067663.1 · 11,785–13,030 bp · −
atpH · NC_067663.1 · 13,322–13,567 bp · −
atpI · NC_067663.1 · 14,568–15,311 bp · −
rps2 · NC_067663.1 · 15,537–16,247 bp · −
rpoC2 · NC_067663.1 · 16,464–20,645 bp · −
rpoC1 · NC_067663.1 · 20,810–23,637 bp · −
rpoB · NC_067663.1 · 23,664–26,876 bp · −
psbM · NC_067663.1 · 29,379–29,483 bp · −
trnD-GUC · NC_067663.1 · 30,002–30,075 bp · −
trnY-GUA · NC_067663.1 · 30,186–30,269 bp · −
trnE-UUC · NC_067663.1 · 30,347–30,419 bp · −
trnS-UGA · NC_067663.1 · 35,084–35,176 bp · −
trnfM-CAU · NC_067663.1 · 36,210–36,283 bp · −
rps14 · NC_067663.1 · 36,429–36,731 bp · −
psaB · NC_067663.1 · 36,854–39,058 bp · −
psaA · NC_067663.1 · 39,084–41,336 bp · −
ycf3 · NC_067663.1 · 42,133–44,080 bp · −
rps4 · NC_067663.1 · 45,327–45,932 bp · −
trnT-UGU · NC_067663.1 · 46,357–46,429 bp · −
ndhJ · NC_067663.1 · 48,701–49,177 bp · −
ndhK · NC_067663.1 · 49,288–49,965 bp · −
ndhC · NC_067663.1 · 50,017–50,379 bp · −
trnV-UAC · NC_067663.1 · 51,336–51,991 bp · −
atpE · NC_067663.1 · 52,445–52,846 bp · −
atpB · NC_067663.1 · 52,843–54,339 bp · −
psbJ · NC_067663.1 · 64,056–64,178 bp · −
psbL · NC_067663.1 · 64,313–64,429 bp · −
psbF · NC_067663.1 · 64,453–64,572 bp · −
psbE · NC_067663.1 · 64,587–64,838 bp · −
trnW-CCA · NC_067663.1 · 66,237–66,310 bp · −
trnP-UGG · NC_067663.1 · 66,479–66,552 bp · −
rpl20 · NC_067663.1 · 68,337–68,723 bp · −
rps12 · NC_067663.1 · 69,456–69,569 bp · −
rps12 · NC_067663.1 · 96,868–97,660 bp · −
clpP · NC_067663.1 · 69,688–71,604 bp · −
psbN · NC_067663.1 · 73,953–74,084 bp · −
rpoA · NC_067663.1 · 77,464–78,471 bp · −
rps11 · NC_067663.1 · 78,543–78,959 bp · −
rpl36 · NC_067663.1 · 79,075–79,188 bp · −
infA · NC_067663.1 · 79,284–79,517 bp · −
rps8 · NC_067663.1 · 79,644–80,048 bp · −
rpl14 · NC_067663.1 · 80,231–80,599 bp · −
rpl16 · NC_067663.1 · 80,733–82,000 bp · −
rps3 · NC_067663.1 · 82,144–82,806 bp · −
rpl22 · NC_067663.1 · 82,791–83,264 bp · −
rps19 · NC_067663.1 · 83,329–83,607 bp · −
rpl2 · NC_067663.1 · 83,675–85,153 bp · −
rpl23 · NC_067663.1 · 85,172–85,453 bp · −
trnI-CAU · NC_067663.1 · 85,619–85,692 bp · −
trnL-CAA · NC_067663.1 · 93,217–93,297 bp · −
ndhB · NC_067663.1 · 93,869–96,076 bp · −
rps7 · NC_067663.1 · 96,347–96,814 bp · −
trnN-GUU · NC_067663.1 · 107,812–107,883 bp · −
ndhF · NC_067663.1 · 109,249–111,480 bp · −
ndhD · NC_067663.1 · 114,274–115,803 bp · −
psaC · NC_067663.1 · 115,894–116,139 bp · −
ndhE · NC_067663.1 · 116,395–116,700 bp · −
ndhG · NC_067663.1 · 116,915–117,445 bp · −
ndhI · NC_067663.1 · 117,803–118,309 bp · −
ndhA · NC_067663.1 · 118,390–120,506 bp · −
ndhH · NC_067663.1 · 120,508–121,689 bp · −
rps15 · NC_067663.1 · 121,804–122,076 bp · −
ycf1 · NC_067663.1 · 122,506–128,028 bp · −
trnR-ACG · NC_067663.1 · 129,008–129,081 bp · −
rrn5 · NC_067663.1 · 129,325–129,445 bp · −
rrn4.5 · NC_067663.1 · 129,701–129,803 bp · −
rrn23 · NC_067663.1 · 129,902–132,712 bp · −
trnA-UGC · NC_067663.1 · 132,884–133,762 bp · −
trnI-GAU · NC_067663.1 · 133,827–134,845 bp · −
rrn16 · NC_067663.1 · 135,143–136,633 bp · −
trnV-GAC · NC_067663.1 · 136,860–136,931 bp · −
ycf15 · NC_067663.1 · 143,297–143,446 bp · −
ycf2 · NC_067663.1 · 143,636–150,466 bp · −
psbK · NC_067663.1 · 7,340–7,525 bp · +
psbI · NC_067663.1 · 7,912–8,022 bp · +
trnG-UCC · NC_067663.1 · 9,027–9,786 bp · +
trnR-UCU · NC_067663.1 · 9,977–10,048 bp · +
trnC-GCA · NC_067663.1 · 28,071–28,141 bp · +
petN · NC_067663.1 · 28,304–28,393 bp · +
trnT-GGU · NC_067663.1 · 31,029–31,100 bp · +
psbD · NC_067663.1 · 32,418–33,479 bp · +
psbC · NC_067663.1 · 33,427–34,848 bp · +
psbZ · NC_067663.1 · 35,517–35,705 bp · +
trnG-GCC · NC_067663.1 · 35,950–36,020 bp · +
trnS-GGA · NC_067663.1 · 44,944–45,030 bp · +
trnL-UAA · NC_067663.1 · 47,117–47,666 bp · +
trnF-GAA · NC_067663.1 · 47,960–48,032 bp · +
trnM-CAU · NC_067663.1 · 52,172–52,244 bp · +
rbcL · NC_067663.1 · 55,130–56,563 bp · +
accD · NC_067663.1 · 57,268–58,749 bp · +
psaI · NC_067663.1 · 59,450–59,560 bp · +
ycf4 · NC_067663.1 · 60,007–60,561 bp · +
cemA · NC_067663.1 · 61,152–61,841 bp · +
petA · NC_067663.1 · 62,056–63,018 bp · +
petL · NC_067663.1 · 65,731–65,826 bp · +
petG · NC_067663.1 · 66,001–66,114 bp · +
psaJ · NC_067663.1 · 66,834–66,968 bp · +
rpl33 · NC_067663.1 · 67,428–67,628 bp · +
rps18 · NC_067663.1 · 67,795–68,100 bp · +
rps12 · NC_067663.1 · 138,593–139,385 bp · +
psbB · NC_067663.1 · 72,077–73,603 bp · +
psbT · NC_067663.1 · 73,786–73,887 bp · +
psbH · NC_067663.1 · 74,190–74,408 bp · +
petB · NC_067663.1 · 74,534–75,899 bp · +
petD · NC_067663.1 · 76,088–77,287 bp · +
ycf2 · NC_067663.1 · 85,787–92,617 bp · +
ycf15 · NC_067663.1 · 92,807–92,956 bp · +
trnV-GAC · NC_067663.1 · 99,322–99,393 bp · +
rrn16 · NC_067663.1 · 99,620–101,110 bp · +
trnI-GAU · NC_067663.1 · 101,408–102,426 bp · +
trnA-UGC · NC_067663.1 · 102,491–103,369 bp · +
rrn23 · NC_067663.1 · 103,541–106,351 bp · +
rrn4.5 · NC_067663.1 · 106,450–106,552 bp · +
rrn5 · NC_067663.1 · 106,808–106,928 bp · +
trnR-ACG · NC_067663.1 · 107,172–107,245 bp · +
ycf1 · NC_067663.1 · 108,225–109,355 bp · +
rpl32 · NC_067663.1 · 111,956–112,126 bp · +
trnL-UAG · NC_067663.1 · 112,892–112,971 bp · +
ccsA · NC_067663.1 · 113,070–114,041 bp · +
trnN-GUU · NC_067663.1 · 128,370–128,441 bp · +
rps7 · NC_067663.1 · 139,439–139,906 bp · +
ndhB · NC_067663.1 · 140,177–142,384 bp · +
trnL-CAA · NC_067663.1 · 142,956–143,036 bp · +
trnI-CAU · NC_067663.1 · 150,561–150,634 bp · +
rpl23 · NC_067663.1 · 150,800–151,081 bp · +
rpl2 · NC_067663.1 · 151,100–152,578 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Isodon irroratus
ANNOTATED PLASTOME
NC_067663.1
152,688 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
ATP synthase
Ribosomal protein
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38172 76344 114516 152688 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK OOC32_pgp086 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 11 85 75 Locate
psbA gene − 389 1447 1059 Locate
trnK-UUU gene − 1679 4259 2581 Locate
matK gene − 1999 3519 1521 Locate
OOC32_pgp086 gene − 4784 5929 1146 Locate
trnQ-UUG gene − 6875 6946 72 Locate
psbK gene + 7340 7525 186 Locate
psbI gene + 7912 8022 111 Locate
trnS-GCU gene − 8178 8265 88 Locate
trnG-UCC gene + 9027 9786 760 Locate
trnR-UCU gene + 9977 10048 72 Locate
atpA gene − 10152 11675 1524 Locate
atpF gene − 11785 13030 1246 Locate
atpH gene − 13322 13567 246 Locate
atpI gene − 14568 15311 744 Locate
rps2 gene − 15537 16247 711 Locate
rpoC2 gene − 16464 20645 4182 Locate
rpoC1 gene − 20810 23637 2828 Locate
rpoB gene − 23664 26876 3213 Locate
trnC-GCA gene + 28071 28141 71 Locate
petN gene + 28304 28393 90 Locate
psbM gene − 29379 29483 105 Locate
trnD-GUC gene − 30002 30075 74 Locate
trnY-GUA gene − 30186 30269 84 Locate
trnE-UUC gene − 30347 30419 73 Locate
trnT-GGU gene + 31029 31100 72 Locate
psbD gene + 32418 33479 1062 Locate
psbC gene + 33427 34848 1422 Locate
trnS-UGA gene − 35084 35176 93 Locate
psbZ gene + 35517 35705 189 Locate
trnG-GCC gene + 35950 36020 71 Locate
trnfM-CAU gene − 36210 36283 74 Locate
rps14 gene − 36429 36731 303 Locate
psaB gene − 36854 39058 2205 Locate
psaA gene − 39084 41336 2253 Locate
ycf3 gene − 42133 44080 1948 Locate
trnS-GGA gene + 44944 45030 87 Locate
rps4 gene − 45327 45932 606 Locate
trnT-UGU gene − 46357 46429 73 Locate
trnL-UAA gene + 47117 47666 550 Locate
trnF-GAA gene + 47960 48032 73 Locate
ndhJ gene − 48701 49177 477 Locate
ndhK gene − 49288 49965 678 Locate
ndhC gene − 50017 50379 363 Locate
trnV-UAC gene − 51336 51991 656 Locate
trnM-CAU gene + 52172 52244 73 Locate
atpE gene − 52445 52846 402 Locate
atpB gene − 52843 54339 1497 Locate
rbcL gene + 55130 56563 1434 Locate
accD gene + 57268 58749 1482 Locate
psaI gene + 59450 59560 111 Locate
ycf4 gene + 60007 60561 555 Locate
cemA gene + 61152 61841 690 Locate
petA gene + 62056 63018 963 Locate
psbJ gene − 64056 64178 123 Locate
psbL gene − 64313 64429 117 Locate
psbF gene − 64453 64572 120 Locate
psbE gene − 64587 64838 252 Locate
petL gene + 65731 65826 96 Locate
petG gene + 66001 66114 114 Locate
trnW-CCA gene − 66237 66310 74 Locate
trnP-UGG gene − 66479 66552 74 Locate
psaJ gene + 66834 66968 135 Locate
rpl33 gene + 67428 67628 201 Locate
rps18 gene + 67795 68100 306 Locate
rpl20 gene − 68337 68723 387 Locate
rps12 gene − 69456 69569 114 Locate
clpP gene − 69688 71604 1917 Locate
psbB gene + 72077 73603 1527 Locate
psbT gene + 73786 73887 102 Locate
psbN gene − 73953 74084 132 Locate
psbH gene + 74190 74408 219 Locate
petB gene + 74534 75899 1366 Locate
petD gene + 76088 77287 1200 Locate
rpoA gene − 77464 78471 1008 Locate
rps11 gene − 78543 78959 417 Locate
rpl36 gene − 79075 79188 114 Locate
infA gene − 79284 79517 234 Locate
rps8 gene − 79644 80048 405 Locate
rpl14 gene − 80231 80599 369 Locate
rpl16 gene − 80733 82000 1268 Locate
rps3 gene − 82144 82806 663 Locate
rpl22 gene − 82791 83264 474 Locate
rps19 gene − 83329 83607 279 Locate
rpl2 gene − 83675 85153 1479 Locate
rpl23 gene − 85172 85453 282 Locate
trnI-CAU gene − 85619 85692 74 Locate
ycf2 gene + 85787 92617 6831 Locate
ycf15 gene + 92807 92956 150 Locate
trnL-CAA gene − 93217 93297 81 Locate
ndhB gene − 93869 96076 2208 Locate
rps7 gene − 96347 96814 468 Locate
rps12 gene − 96868 97660 793 Locate
trnV-GAC gene + 99322 99393 72 Locate
rrn16 gene + 99620 101110 1491 Locate
trnI-GAU gene + 101408 102426 1019 Locate
trnA-UGC gene + 102491 103369 879 Locate
rrn23 gene + 103541 106351 2811 Locate
rrn4.5 gene + 106450 106552 103 Locate
rrn5 gene + 106808 106928 121 Locate
trnR-ACG gene + 107172 107245 74 Locate
trnN-GUU gene − 107812 107883 72 Locate
ycf1 gene + 108225 109355 1131 Locate
ndhF gene − 109249 111480 2232 Locate
rpl32 gene + 111956 112126 171 Locate
trnL-UAG gene + 112892 112971 80 Locate
ccsA gene + 113070 114041 972 Locate
ndhD gene − 114274 115803 1530 Locate
psaC gene − 115894 116139 246 Locate
ndhE gene − 116395 116700 306 Locate
ndhG gene − 116915 117445 531 Locate
ndhI gene − 117803 118309 507 Locate
ndhA gene − 118390 120506 2117 Locate
ndhH gene − 120508 121689 1182 Locate
rps15 gene − 121804 122076 273 Locate
ycf1 gene − 122506 128028 5523 Locate
trnN-GUU gene + 128370 128441 72 Locate
trnR-ACG gene − 129008 129081 74 Locate
rrn5 gene − 129325 129445 121 Locate
rrn4.5 gene − 129701 129803 103 Locate
rrn23 gene − 129902 132712 2811 Locate
trnA-UGC gene − 132884 133762 879 Locate
trnI-GAU gene − 133827 134845 1019 Locate
rrn16 gene − 135143 136633 1491 Locate
trnV-GAC gene − 136860 136931 72 Locate
rps12 gene + 138593 139385 793 Locate
rps7 gene + 139439 139906 468 Locate
ndhB gene + 140177 142384 2208 Locate
trnL-CAA gene + 142956 143036 81 Locate
ycf15 gene − 143297 143446 150 Locate
ycf2 gene − 143636 150466 6831 Locate
trnI-CAU gene + 150561 150634 74 Locate
rpl23 gene + 150800 151081 282 Locate
rpl2 gene + 151100 152578 1479 Locate
Status Available
Accession NC_067663.1
Length 152,688 bp
GC content 37.6%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 16 Atp Synthase 6 Ribosomal Protein 25 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources