Isodon japonicus var. glaucocalyx chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · ON858864.1 · 11–85 bp · −
psbA · ON858864.1 · 393–1,451 bp · −
trnK-UUU · ON858864.1 · 1,683–4,263 bp · −
matK · ON858864.1 · 2,003–3,523 bp · −
trnQ-UUG · ON858864.1 · 6,878–6,949 bp · −
trnS-GCU · ON858864.1 · 8,182–8,269 bp · −
atpA · ON858864.1 · 10,156–11,679 bp · −
atpF · ON858864.1 · 11,785–13,030 bp · −
atpH · ON858864.1 · 13,322–13,567 bp · −
atpI · ON858864.1 · 14,569–15,312 bp · −
rps2 · ON858864.1 · 15,538–16,248 bp · −
rpoC2 · ON858864.1 · 16,465–20,646 bp · −
rpoC1 · ON858864.1 · 20,811–23,649 bp · −
rpoB · ON858864.1 · 23,676–26,888 bp · −
psbM · ON858864.1 · 29,393–29,497 bp · −
trnD-GUC · ON858864.1 · 30,016–30,089 bp · −
trnY-GUA · ON858864.1 · 30,200–30,283 bp · −
trnE-UUC · ON858864.1 · 30,361–30,433 bp · −
trnS-UGA · ON858864.1 · 35,098–35,190 bp · −
trnfM-CAU · ON858864.1 · 36,225–36,298 bp · −
rps14 · ON858864.1 · 36,444–36,746 bp · −
psaB · ON858864.1 · 36,869–39,073 bp · −
psaA · ON858864.1 · 39,099–41,351 bp · −
ycf3 · ON858864.1 · 42,119–44,066 bp · −
rps4 · ON858864.1 · 45,313–45,918 bp · −
trnT-UGU · ON858864.1 · 46,334–46,406 bp · −
ndhJ · ON858864.1 · 48,691–49,167 bp · −
ndhK · ON858864.1 · 49,278–49,955 bp · −
ndhC · ON858864.1 · 50,007–50,369 bp · −
trnV-UAC · ON858864.1 · 51,332–51,987 bp · −
atpE · ON858864.1 · 52,441–52,842 bp · −
atpB · ON858864.1 · 52,839–54,335 bp · −
psbJ · ON858864.1 · 64,060–64,182 bp · −
psbL · ON858864.1 · 64,317–64,433 bp · −
psbF · ON858864.1 · 64,457–64,576 bp · −
psbE · ON858864.1 · 64,591–64,842 bp · −
trnW-CCA · ON858864.1 · 66,241–66,314 bp · −
trnP-UGG · ON858864.1 · 66,483–66,556 bp · −
rpl20 · ON858864.1 · 68,341–68,727 bp · −
rps12 · ON858864.1 · 69,459–69,572 bp · −
rps12 · ON858864.1 · 96,865–97,657 bp · −
clpP · ON858864.1 · 69,691–71,605 bp · −
psbN · ON858864.1 · 73,955–74,086 bp · −
rpoA · ON858864.1 · 77,460–78,467 bp · −
rps11 · ON858864.1 · 78,539–78,955 bp · −
rpl36 · ON858864.1 · 79,071–79,184 bp · −
infA · ON858864.1 · 79,280–79,513 bp · −
rps8 · ON858864.1 · 79,640–80,044 bp · −
rpl14 · ON858864.1 · 80,227–80,595 bp · −
rpl16 · ON858864.1 · 80,729–81,997 bp · −
rps3 · ON858864.1 · 82,141–82,803 bp · −
rpl22 · ON858864.1 · 82,788–83,261 bp · −
rps19 · ON858864.1 · 83,326–83,604 bp · −
rpl2 · ON858864.1 · 83,672–85,150 bp · −
rpl23 · ON858864.1 · 85,169–85,450 bp · −
trnI-CAU · ON858864.1 · 85,616–85,689 bp · −
trnL-CAA · ON858864.1 · 93,214–93,294 bp · −
ndhB · ON858864.1 · 93,866–96,073 bp · −
rps7 · ON858864.1 · 96,344–96,811 bp · −
trnN-GUU · ON858864.1 · 107,805–107,876 bp · −
ndhF · ON858864.1 · 109,242–111,473 bp · −
ndhD · ON858864.1 · 114,243–115,772 bp · −
psaC · ON858864.1 · 115,863–116,108 bp · −
ndhE · ON858864.1 · 116,364–116,669 bp · −
ndhG · ON858864.1 · 116,884–117,414 bp · −
ndhI · ON858864.1 · 117,773–118,279 bp · −
ndhA · ON858864.1 · 118,360–120,482 bp · −
ndhH · ON858864.1 · 120,484–121,665 bp · −
rps15 · ON858864.1 · 121,780–122,052 bp · −
ycf1 · ON858864.1 · 122,482–128,004 bp · −
trnR-ACG · ON858864.1 · 128,980–129,053 bp · −
rrn5 · ON858864.1 · 129,297–129,417 bp · −
rrn4.5 · ON858864.1 · 129,673–129,775 bp · −
rrn23 · ON858864.1 · 129,874–132,684 bp · −
trnA-UGC · ON858864.1 · 132,856–133,734 bp · −
trnI-GAU · ON858864.1 · 133,799–134,817 bp · −
rrn16 · ON858864.1 · 135,115–136,605 bp · −
trnV-GAC · ON858864.1 · 136,832–136,903 bp · −
ycf15 · ON858864.1 · 143,269–143,418 bp · −
ycf2 · ON858864.1 · 143,608–150,438 bp · −
psbK · ON858864.1 · 7,343–7,528 bp · +
psbI · ON858864.1 · 7,916–8,026 bp · +
trnG-UCC · ON858864.1 · 9,031–9,790 bp · +
trnR-UCU · ON858864.1 · 9,981–10,052 bp · +
trnC-GCA · ON858864.1 · 28,078–28,148 bp · +
petN · ON858864.1 · 28,311–28,400 bp · +
trnT-GGU · ON858864.1 · 31,043–31,114 bp · +
psbD · ON858864.1 · 32,432–33,493 bp · +
psbC · ON858864.1 · 33,441–34,862 bp · +
psbZ · ON858864.1 · 35,531–35,719 bp · +
trnG-GCC · ON858864.1 · 35,964–36,034 bp · +
trnS-GGA · ON858864.1 · 44,930–45,016 bp · +
trnL-UAA · ON858864.1 · 47,093–47,657 bp · +
trnF-GAA · ON858864.1 · 47,951–48,023 bp · +
trnM-CAU · ON858864.1 · 52,168–52,240 bp · +
rbcL · ON858864.1 · 55,127–56,560 bp · +
accD · ON858864.1 · 57,265–58,746 bp · +
psaI · ON858864.1 · 59,446–59,556 bp · +
ycf4 · ON858864.1 · 60,003–60,557 bp · +
cemA · ON858864.1 · 61,148–61,837 bp · +
petA · ON858864.1 · 62,059–63,021 bp · +
petL · ON858864.1 · 65,735–65,830 bp · +
petG · ON858864.1 · 66,005–66,118 bp · +
psaJ · ON858864.1 · 66,838–66,972 bp · +
rpl33 · ON858864.1 · 67,434–67,634 bp · +
rps18 · ON858864.1 · 67,801–68,106 bp · +
rps12 · ON858864.1 · 138,565–139,357 bp · +
psbB · ON858864.1 · 72,078–73,604 bp · +
psbT · ON858864.1 · 73,788–73,889 bp · +
psbH · ON858864.1 · 74,192–74,410 bp · +
petB · ON858864.1 · 74,536–75,902 bp · +
petD · ON858864.1 · 76,091–77,283 bp · +
ycf2 · ON858864.1 · 85,784–92,614 bp · +
ycf15 · ON858864.1 · 92,804–92,953 bp · +
trnV-GAC · ON858864.1 · 99,319–99,390 bp · +
rrn16 · ON858864.1 · 99,617–101,107 bp · +
trnI-GAU · ON858864.1 · 101,405–102,423 bp · +
trnA-UGC · ON858864.1 · 102,488–103,366 bp · +
rrn23 · ON858864.1 · 103,538–106,348 bp · +
rrn4.5 · ON858864.1 · 106,447–106,549 bp · +
rrn5 · ON858864.1 · 106,805–106,925 bp · +
trnR-ACG · ON858864.1 · 107,169–107,242 bp · +
ycf1 · ON858864.1 · 108,218–109,348 bp · +
rpl32 · ON858864.1 · 111,942–112,112 bp · +
trnL-UAG · ON858864.1 · 112,871–112,950 bp · +
ccsA · ON858864.1 · 113,039–114,010 bp · +
trnN-GUU · ON858864.1 · 128,346–128,417 bp · +
rps7 · ON858864.1 · 139,411–139,878 bp · +
ndhB · ON858864.1 · 140,149–142,356 bp · +
trnL-CAA · ON858864.1 · 142,928–143,008 bp · +
trnI-CAU · ON858864.1 · 150,533–150,606 bp · +
rpl23 · ON858864.1 · 150,772–151,053 bp · +
rpl2 · ON858864.1 · 151,072–152,550 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Isodon japonicus var. glaucocalyx
ANNOTATED PLASTOME
ON858864.1
152,660 bp · 132 genes
Gene function
Transfer RNA
Photosystem II
Other
ATP synthase
Ribosomal protein
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38165 76330 114495 152660 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
133 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 11 85 75 Locate
psbA gene − 393 1451 1059 Locate
trnK-UUU gene − 1683 4263 2581 Locate
matK gene − 2003 3523 1521 Locate
trnQ-UUG gene − 6878 6949 72 Locate
psbK gene + 7343 7528 186 Locate
psbI gene + 7916 8026 111 Locate
trnS-GCU gene − 8182 8269 88 Locate
trnG-UCC gene + 9031 9790 760 Locate
trnR-UCU gene + 9981 10052 72 Locate
atpA gene − 10156 11679 1524 Locate
atpF gene − 11785 13030 1246 Locate
atpH gene − 13322 13567 246 Locate
atpI gene − 14569 15312 744 Locate
rps2 gene − 15538 16248 711 Locate
rpoC2 gene − 16465 20646 4182 Locate
rpoC1 gene − 20811 23649 2839 Locate
rpoB gene − 23676 26888 3213 Locate
trnC-GCA gene + 28078 28148 71 Locate
petN gene + 28311 28400 90 Locate
psbM gene − 29393 29497 105 Locate
trnD-GUC gene − 30016 30089 74 Locate
trnY-GUA gene − 30200 30283 84 Locate
trnE-UUC gene − 30361 30433 73 Locate
trnT-GGU gene + 31043 31114 72 Locate
psbD gene + 32432 33493 1062 Locate
psbC gene + 33441 34862 1422 Locate
trnS-UGA gene − 35098 35190 93 Locate
psbZ gene + 35531 35719 189 Locate
trnG-GCC gene + 35964 36034 71 Locate
trnfM-CAU gene − 36225 36298 74 Locate
rps14 gene − 36444 36746 303 Locate
psaB gene − 36869 39073 2205 Locate
psaA gene − 39099 41351 2253 Locate
ycf3 gene − 42119 44066 1948 Locate
trnS-GGA gene + 44930 45016 87 Locate
rps4 gene − 45313 45918 606 Locate
trnT-UGU gene − 46334 46406 73 Locate
trnL-UAA gene + 47093 47657 565 Locate
trnF-GAA gene + 47951 48023 73 Locate
ndhJ gene − 48691 49167 477 Locate
ndhK gene − 49278 49955 678 Locate
ndhC gene − 50007 50369 363 Locate
trnV-UAC gene − 51332 51987 656 Locate
trnM-CAU gene + 52168 52240 73 Locate
atpE gene − 52441 52842 402 Locate
atpB gene − 52839 54335 1497 Locate
rbcL gene + 55127 56560 1434 Locate
accD gene + 57265 58746 1482 Locate
psaI gene + 59446 59556 111 Locate
ycf4 gene + 60003 60557 555 Locate
cemA gene + 61148 61837 690 Locate
petA gene + 62059 63021 963 Locate
psbJ gene − 64060 64182 123 Locate
psbL gene − 64317 64433 117 Locate
psbF gene − 64457 64576 120 Locate
psbE gene − 64591 64842 252 Locate
petL gene + 65735 65830 96 Locate
petG gene + 66005 66118 114 Locate
trnW-CCA gene − 66241 66314 74 Locate
trnP-UGG gene − 66483 66556 74 Locate
psaJ gene + 66838 66972 135 Locate
rpl33 gene + 67434 67634 201 Locate
rps18 gene + 67801 68106 306 Locate
rpl20 gene − 68341 68727 387 Locate
rps12 gene − 69459 69572 114 Locate
clpP gene − 69691 71605 1915 Locate
psbB gene + 72078 73604 1527 Locate
psbT gene + 73788 73889 102 Locate
psbN gene − 73955 74086 132 Locate
psbH gene + 74192 74410 219 Locate
petB gene + 74536 75902 1367 Locate
petD gene + 76091 77283 1193 Locate
rpoA gene − 77460 78467 1008 Locate
rps11 gene − 78539 78955 417 Locate
rpl36 gene − 79071 79184 114 Locate
infA gene − 79280 79513 234 Locate
rps8 gene − 79640 80044 405 Locate
rpl14 gene − 80227 80595 369 Locate
rpl16 gene − 80729 81997 1269 Locate
rps3 gene − 82141 82803 663 Locate
rpl22 gene − 82788 83261 474 Locate
rps19 gene − 83326 83604 279 Locate
rpl2 gene − 83672 85150 1479 Locate
rpl23 gene − 85169 85450 282 Locate
trnI-CAU gene − 85616 85689 74 Locate
ycf2 gene + 85784 92614 6831 Locate
ycf15 gene + 92804 92953 150 Locate
trnL-CAA gene − 93214 93294 81 Locate
ndhB gene − 93866 96073 2208 Locate
rps7 gene − 96344 96811 468 Locate
rps12 gene − 96865 97657 793 Locate
trnV-GAC gene + 99319 99390 72 Locate
rrn16 gene + 99617 101107 1491 Locate
trnI-GAU gene + 101405 102423 1019 Locate
trnA-UGC gene + 102488 103366 879 Locate
rrn23 gene + 103538 106348 2811 Locate
rrn4.5 gene + 106447 106549 103 Locate
rrn5 gene + 106805 106925 121 Locate
trnR-ACG gene + 107169 107242 74 Locate
trnN-GUU gene − 107805 107876 72 Locate
ycf1 gene + 108218 109348 1131 Locate
ndhF gene − 109242 111473 2232 Locate
rpl32 gene + 111942 112112 171 Locate
trnL-UAG gene + 112871 112950 80 Locate
ccsA gene + 113039 114010 972 Locate
ndhD gene − 114243 115772 1530 Locate
psaC gene − 115863 116108 246 Locate
ndhE gene − 116364 116669 306 Locate
ndhG gene − 116884 117414 531 Locate
ndhI gene − 117773 118279 507 Locate
ndhA gene − 118360 120482 2123 Locate
ndhH gene − 120484 121665 1182 Locate
rps15 gene − 121780 122052 273 Locate
ycf1 gene − 122482 128004 5523 Locate
trnN-GUU gene + 128346 128417 72 Locate
trnR-ACG gene − 128980 129053 74 Locate
rrn5 gene − 129297 129417 121 Locate
rrn4.5 gene − 129673 129775 103 Locate
rrn23 gene − 129874 132684 2811 Locate
trnA-UGC gene − 132856 133734 879 Locate
trnI-GAU gene − 133799 134817 1019 Locate
rrn16 gene − 135115 136605 1491 Locate
trnV-GAC gene − 136832 136903 72 Locate
rps12 gene + 138565 139357 793 Locate
rps7 gene + 139411 139878 468 Locate
ndhB gene + 140149 142356 2208 Locate
trnL-CAA gene + 142928 143008 81 Locate
ycf15 gene − 143269 143418 150 Locate
ycf2 gene − 143608 150438 6831 Locate
trnI-CAU gene + 150533 150606 74 Locate
rpl23 gene + 150772 151053 282 Locate
rpl2 gene + 151072 152550 1479 Locate
Status Available
Accession ON858864.1
Length 152,660 bp
GC content 37.6%
Annotated genes 132
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Atp Synthase 6 Ribosomal Protein 25 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources