Coordinate-aware organelle record

Isodon japonicus var. japonicus chloroplast genome

Available ON858903.1 152,684 bp 132 coordinate-linked features

Gene-position browser

Map and table selections are linked. Coordinates use the source accession coordinate system.

132 features

Gene	Type	Group	Strand	Start	End	Length
trnH-GUG	gene	translation-rna	−	10	85	75
psbA	gene	photosystem-ii	−	392	1451	1059
trnK-UUU	gene	translation-rna	−	1682	4263	2581
matK	gene	other	−	2002	3523	1521
trnQ-UUG	gene	translation-rna	−	6879	6951	72
psbK	gene	photosystem-ii	+	7344	7530	186
psbI	gene	photosystem-ii	+	7918	8029	111
trnS-GCU	gene	translation-rna	−	8184	8272	88
trnG-UCC	gene	translation-rna	+	9035	9795	760
trnR-UCU	gene	translation-rna	+	9985	10057	72
atpA	gene	atp-synthase	−	10160	11684	1524
atpF	gene	atp-synthase	−	11793	13039	1246
atpH	gene	atp-synthase	−	13330	13576	246
atpI	gene	atp-synthase	−	14576	15320	744
rps2	gene	ribosomal-protein	−	15545	16256	711
rpoC2	gene	rna-polymerase	−	16472	20654	4182
rpoC1	gene	rna-polymerase	−	20818	23652	2834
rpoB	gene	rna-polymerase	−	23678	26891	3213
trnC-GCA	gene	translation-rna	+	28080	28151	71
petN	gene	cytochrome	+	28313	28403	90
psbM	gene	photosystem-ii	−	29394	29499	105
trnD-GUC	gene	translation-rna	−	30017	30091	74
trnY-GUA	gene	translation-rna	−	30201	30285	84
trnE-UUC	gene	translation-rna	−	30362	30435	73
trnT-GGU	gene	translation-rna	+	31044	31116	72
psbD	gene	photosystem-ii	+	32433	33495	1062
psbC	gene	photosystem-ii	+	33442	34864	1422
trnS-UGA	gene	translation-rna	−	35099	35192	93
psbZ	gene	photosystem-ii	+	35532	35721	189
trnG-GCC	gene	translation-rna	+	35965	36036	71
trnfM-CAU	gene	translation-rna	−	36225	36299	74
rps14	gene	ribosomal-protein	−	36444	36747	303
psaB	gene	photosystem-i	−	36869	39074	2205
psaA	gene	photosystem-i	−	39099	41352	2253
ycf3	gene	other	−	42126	44074	1948
trnS-GGA	gene	translation-rna	+	44932	45019	87
rps4	gene	ribosomal-protein	−	45315	45921	606
trnT-UGU	gene	translation-rna	−	46315	46388	73
trnL-UAA	gene	translation-rna	+	47073	47637	564
trnF-GAA	gene	translation-rna	+	47930	48003	73
ndhJ	gene	nad-dehydrogenase	−	48670	49147	477
ndhK	gene	nad-dehydrogenase	−	49257	49935	678
ndhC	gene	nad-dehydrogenase	−	49986	50349	363
trnV-UAC	gene	translation-rna	−	51305	51961	656
trnM-CAU	gene	translation-rna	+	52141	52214	73
atpE	gene	atp-synthase	−	52414	52816	402
atpB	gene	atp-synthase	−	52812	54309	1497
rbcL	gene	other	+	55099	56533	1434
accD	gene	other	+	57231	58713	1482
psaI	gene	photosystem-i	+	59419	59530	111
ycf4	gene	other	+	59977	60532	555
cemA	gene	other	+	61115	61805	690
petA	gene	cytochrome	+	62019	62982	963
psbJ	gene	photosystem-ii	−	64020	64143	123
psbL	gene	photosystem-ii	−	64277	64394	117
psbF	gene	photosystem-ii	−	64417	64537	120
psbE	gene	photosystem-ii	−	64551	64803	252
petL	gene	cytochrome	+	65714	65810	96
petG	gene	cytochrome	+	65984	66098	114
trnW-CCA	gene	translation-rna	−	66220	66294	74
trnP-UGG	gene	translation-rna	−	66462	66536	74
psaJ	gene	photosystem-i	+	66817	66952	135
rpl33	gene	ribosomal-protein	+	67413	67614	201
rps18	gene	ribosomal-protein	+	67780	68086	306
rpl20	gene	ribosomal-protein	−	68320	68707	387
rps12	gene	ribosomal-protein	−	69441	97646	28205
rps12	gene	ribosomal-protein	+	69441	139375	69934
clpP	gene	other	−	69673	71590	1917
psbB	gene	photosystem-ii	+	72061	73588	1527
psbT	gene	photosystem-ii	+	73771	73873	102
psbN	gene	photosystem-ii	−	73938	74070	132
psbH	gene	photosystem-ii	+	74175	74394	219
petB	gene	cytochrome	+	74519	75886	1367
petD	gene	cytochrome	+	76074	77267	1193
rpoA	gene	rna-polymerase	−	77443	78451	1008
rps11	gene	ribosomal-protein	−	78522	78939	417
rpl36	gene	ribosomal-protein	−	79054	79168	114
infA	gene	other	−	79263	79497	234
rps8	gene	ribosomal-protein	−	79623	80028	405
rpl14	gene	ribosomal-protein	−	80210	80579	369
rpl16	gene	ribosomal-protein	−	80712	81980	1268
rps3	gene	ribosomal-protein	−	82123	82786	663
rpl22	gene	ribosomal-protein	−	82770	83244	474
rps19	gene	ribosomal-protein	−	83308	83587	279
rpl2	gene	ribosomal-protein	−	83654	85133	1479
rpl23	gene	ribosomal-protein	−	85151	85433	282
trnI-CAU	gene	translation-rna	−	85598	85672	74
ycf2	gene	other	+	85766	92603	6837
ycf15	gene	other	+	92792	92942	150
trnL-CAA	gene	translation-rna	−	93202	93283	81
ndhB	gene	nad-dehydrogenase	−	93854	96062	2208
rps7	gene	ribosomal-protein	−	96332	96800	468
trnV-GAC	gene	translation-rna	+	99307	99379	72
rrn16	gene	ribosomal-rna	+	99605	101096	1491
trnI-GAU	gene	translation-rna	+	101393	102412	1019
trnA-UGC	gene	translation-rna	+	102476	103355	879
rrn23	gene	ribosomal-rna	+	103526	106337	2811
rrn4.5	gene	ribosomal-rna	+	106435	106538	103
rrn5	gene	ribosomal-rna	+	106793	106914	121
trnR-ACG	gene	translation-rna	+	107157	107231	74
trnN-GUU	gene	translation-rna	−	107797	107869	72
ycf1	gene	other	+	108210	109341	1131
ndhF	gene	nad-dehydrogenase	−	109234	111466	2232
rpl32	gene	ribosomal-protein	+	111941	112112	171
trnL-UAG	gene	translation-rna	+	112876	112956	80
ccsA	gene	other	+	113044	114016	972
ndhD	gene	nad-dehydrogenase	−	114247	115777	1530
psaC	gene	photosystem-i	−	115867	116113	246
ndhE	gene	nad-dehydrogenase	−	116368	116674	306
ndhG	gene	nad-dehydrogenase	−	116888	117419	531
ndhI	gene	nad-dehydrogenase	−	117777	118284	507
ndhA	gene	nad-dehydrogenase	−	118364	120496	2132
ndhH	gene	nad-dehydrogenase	−	120497	121679	1182
rps15	gene	ribosomal-protein	−	121793	122066	273
ycf1	gene	other	−	122495	128018	5523
trnN-GUU	gene	translation-rna	+	128359	128431	72
trnR-ACG	gene	translation-rna	−	128997	129071	74
rrn5	gene	ribosomal-rna	−	129314	129435	121
rrn4.5	gene	ribosomal-rna	−	129690	129793	103
rrn23	gene	ribosomal-rna	−	129891	132702	2811
trnA-UGC	gene	translation-rna	−	132873	133752	879
trnI-GAU	gene	translation-rna	−	133816	134835	1019
rrn16	gene	ribosomal-rna	−	135132	136623	1491
trnV-GAC	gene	translation-rna	−	136849	136921	72
rps7	gene	ribosomal-protein	+	139428	139896	468
ndhB	gene	nad-dehydrogenase	+	140166	142374	2208
trnL-CAA	gene	translation-rna	+	142945	143026	81
ycf15	gene	other	−	143286	143436	150
ycf2	gene	other	−	143625	150462	6837
trnI-CAU	gene	translation-rna	+	150556	150630	74
rpl23	gene	ribosomal-protein	+	150795	151077	282
rpl2	gene	ribosomal-protein	+	151095	152574	1479

Sources and evidence boundary

Accessions, release scope and coordinate evidence remain visible beside the visualization.

Full species sources

Chloroplast genomeON858903.1DNA · accDON858903DNA · atpBON858903DNA · matKON858903DNA · ndhFON858903DNA · psbAON858903DNA · rbcLON858903DNA · rps12ON858903DNA · ycf1ON858903