Isodon japonicus var. japonicus chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · ON858903.1 · 11–85 bp · −
psbA · ON858903.1 · 393–1,451 bp · −
trnK-UUU · ON858903.1 · 1,683–4,263 bp · −
matK · ON858903.1 · 2,003–3,523 bp · −
trnQ-UUG · ON858903.1 · 6,880–6,951 bp · −
trnS-GCU · ON858903.1 · 8,185–8,272 bp · −
atpA · ON858903.1 · 10,161–11,684 bp · −
atpF · ON858903.1 · 11,794–13,039 bp · −
atpH · ON858903.1 · 13,331–13,576 bp · −
atpI · ON858903.1 · 14,577–15,320 bp · −
rps2 · ON858903.1 · 15,546–16,256 bp · −
rpoC2 · ON858903.1 · 16,473–20,654 bp · −
rpoC1 · ON858903.1 · 20,819–23,652 bp · −
rpoB · ON858903.1 · 23,679–26,891 bp · −
psbM · ON858903.1 · 29,395–29,499 bp · −
trnD-GUC · ON858903.1 · 30,018–30,091 bp · −
trnY-GUA · ON858903.1 · 30,202–30,285 bp · −
trnE-UUC · ON858903.1 · 30,363–30,435 bp · −
trnS-UGA · ON858903.1 · 35,100–35,192 bp · −
trnfM-CAU · ON858903.1 · 36,226–36,299 bp · −
rps14 · ON858903.1 · 36,445–36,747 bp · −
psaB · ON858903.1 · 36,870–39,074 bp · −
psaA · ON858903.1 · 39,100–41,352 bp · −
ycf3 · ON858903.1 · 42,127–44,074 bp · −
rps4 · ON858903.1 · 45,316–45,921 bp · −
trnT-UGU · ON858903.1 · 46,316–46,388 bp · −
ndhJ · ON858903.1 · 48,671–49,147 bp · −
ndhK · ON858903.1 · 49,258–49,935 bp · −
ndhC · ON858903.1 · 49,987–50,349 bp · −
trnV-UAC · ON858903.1 · 51,306–51,961 bp · −
atpE · ON858903.1 · 52,415–52,816 bp · −
atpB · ON858903.1 · 52,813–54,309 bp · −
psbJ · ON858903.1 · 64,021–64,143 bp · −
psbL · ON858903.1 · 64,278–64,394 bp · −
psbF · ON858903.1 · 64,418–64,537 bp · −
psbE · ON858903.1 · 64,552–64,803 bp · −
trnW-CCA · ON858903.1 · 66,221–66,294 bp · −
trnP-UGG · ON858903.1 · 66,463–66,536 bp · −
rpl20 · ON858903.1 · 68,321–68,707 bp · −
rps12 · ON858903.1 · 69,442–69,555 bp · −
rps12 · ON858903.1 · 96,854–97,646 bp · −
clpP · ON858903.1 · 69,674–71,590 bp · −
psbN · ON858903.1 · 73,939–74,070 bp · −
rpoA · ON858903.1 · 77,444–78,451 bp · −
rps11 · ON858903.1 · 78,523–78,939 bp · −
rpl36 · ON858903.1 · 79,055–79,168 bp · −
infA · ON858903.1 · 79,264–79,497 bp · −
rps8 · ON858903.1 · 79,624–80,028 bp · −
rpl14 · ON858903.1 · 80,211–80,579 bp · −
rpl16 · ON858903.1 · 80,713–81,980 bp · −
rps3 · ON858903.1 · 82,124–82,786 bp · −
rpl22 · ON858903.1 · 82,771–83,244 bp · −
rps19 · ON858903.1 · 83,309–83,587 bp · −
rpl2 · ON858903.1 · 83,655–85,133 bp · −
rpl23 · ON858903.1 · 85,152–85,433 bp · −
trnI-CAU · ON858903.1 · 85,599–85,672 bp · −
trnL-CAA · ON858903.1 · 93,203–93,283 bp · −
ndhB · ON858903.1 · 93,855–96,062 bp · −
rps7 · ON858903.1 · 96,333–96,800 bp · −
trnN-GUU · ON858903.1 · 107,798–107,869 bp · −
ndhF · ON858903.1 · 109,235–111,466 bp · −
ndhD · ON858903.1 · 114,248–115,777 bp · −
psaC · ON858903.1 · 115,868–116,113 bp · −
ndhE · ON858903.1 · 116,369–116,674 bp · −
ndhG · ON858903.1 · 116,889–117,419 bp · −
ndhI · ON858903.1 · 117,778–118,284 bp · −
ndhA · ON858903.1 · 118,365–120,496 bp · −
ndhH · ON858903.1 · 120,498–121,679 bp · −
rps15 · ON858903.1 · 121,794–122,066 bp · −
ycf1 · ON858903.1 · 122,496–128,018 bp · −
trnR-ACG · ON858903.1 · 128,998–129,071 bp · −
rrn5 · ON858903.1 · 129,315–129,435 bp · −
rrn4.5 · ON858903.1 · 129,691–129,793 bp · −
rrn23 · ON858903.1 · 129,892–132,702 bp · −
trnA-UGC · ON858903.1 · 132,874–133,752 bp · −
trnI-GAU · ON858903.1 · 133,817–134,835 bp · −
rrn16 · ON858903.1 · 135,133–136,623 bp · −
trnV-GAC · ON858903.1 · 136,850–136,921 bp · −
ycf15 · ON858903.1 · 143,287–143,436 bp · −
ycf2 · ON858903.1 · 143,626–150,462 bp · −
psbK · ON858903.1 · 7,345–7,530 bp · +
psbI · ON858903.1 · 7,919–8,029 bp · +
trnG-UCC · ON858903.1 · 9,036–9,795 bp · +
trnR-UCU · ON858903.1 · 9,986–10,057 bp · +
trnC-GCA · ON858903.1 · 28,081–28,151 bp · +
petN · ON858903.1 · 28,314–28,403 bp · +
trnT-GGU · ON858903.1 · 31,045–31,116 bp · +
psbD · ON858903.1 · 32,434–33,495 bp · +
psbC · ON858903.1 · 33,443–34,864 bp · +
psbZ · ON858903.1 · 35,533–35,721 bp · +
trnG-GCC · ON858903.1 · 35,966–36,036 bp · +
trnS-GGA · ON858903.1 · 44,933–45,019 bp · +
trnL-UAA · ON858903.1 · 47,074–47,637 bp · +
trnF-GAA · ON858903.1 · 47,931–48,003 bp · +
trnM-CAU · ON858903.1 · 52,142–52,214 bp · +
rbcL · ON858903.1 · 55,100–56,533 bp · +
accD · ON858903.1 · 57,232–58,713 bp · +
psaI · ON858903.1 · 59,420–59,530 bp · +
ycf4 · ON858903.1 · 59,978–60,532 bp · +
cemA · ON858903.1 · 61,116–61,805 bp · +
petA · ON858903.1 · 62,020–62,982 bp · +
petL · ON858903.1 · 65,715–65,810 bp · +
petG · ON858903.1 · 65,985–66,098 bp · +
psaJ · ON858903.1 · 66,818–66,952 bp · +
rpl33 · ON858903.1 · 67,414–67,614 bp · +
rps18 · ON858903.1 · 67,781–68,086 bp · +
rps12 · ON858903.1 · 138,583–139,375 bp · +
psbB · ON858903.1 · 72,062–73,588 bp · +
psbT · ON858903.1 · 73,772–73,873 bp · +
psbH · ON858903.1 · 74,176–74,394 bp · +
petB · ON858903.1 · 74,520–75,886 bp · +
petD · ON858903.1 · 76,075–77,267 bp · +
ycf2 · ON858903.1 · 85,767–92,603 bp · +
ycf15 · ON858903.1 · 92,793–92,942 bp · +
trnV-GAC · ON858903.1 · 99,308–99,379 bp · +
rrn16 · ON858903.1 · 99,606–101,096 bp · +
trnI-GAU · ON858903.1 · 101,394–102,412 bp · +
trnA-UGC · ON858903.1 · 102,477–103,355 bp · +
rrn23 · ON858903.1 · 103,527–106,337 bp · +
rrn4.5 · ON858903.1 · 106,436–106,538 bp · +
rrn5 · ON858903.1 · 106,794–106,914 bp · +
trnR-ACG · ON858903.1 · 107,158–107,231 bp · +
ycf1 · ON858903.1 · 108,211–109,341 bp · +
rpl32 · ON858903.1 · 111,942–112,112 bp · +
trnL-UAG · ON858903.1 · 112,877–112,956 bp · +
ccsA · ON858903.1 · 113,045–114,016 bp · +
trnN-GUU · ON858903.1 · 128,360–128,431 bp · +
rps7 · ON858903.1 · 139,429–139,896 bp · +
ndhB · ON858903.1 · 140,167–142,374 bp · +
trnL-CAA · ON858903.1 · 142,946–143,026 bp · +
trnI-CAU · ON858903.1 · 150,557–150,630 bp · +
rpl23 · ON858903.1 · 150,796–151,077 bp · +
rpl2 · ON858903.1 · 151,096–152,574 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Isodon japonicus var. japonicus
ANNOTATED PLASTOME
ON858903.1
152,684 bp · 132 genes
Gene function
Transfer RNA
Photosystem II
Other
ATP synthase
Ribosomal protein
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38171 76342 114513 152684 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
133 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 11 85 75 Locate
psbA gene − 393 1451 1059 Locate
trnK-UUU gene − 1683 4263 2581 Locate
matK gene − 2003 3523 1521 Locate
trnQ-UUG gene − 6880 6951 72 Locate
psbK gene + 7345 7530 186 Locate
psbI gene + 7919 8029 111 Locate
trnS-GCU gene − 8185 8272 88 Locate
trnG-UCC gene + 9036 9795 760 Locate
trnR-UCU gene + 9986 10057 72 Locate
atpA gene − 10161 11684 1524 Locate
atpF gene − 11794 13039 1246 Locate
atpH gene − 13331 13576 246 Locate
atpI gene − 14577 15320 744 Locate
rps2 gene − 15546 16256 711 Locate
rpoC2 gene − 16473 20654 4182 Locate
rpoC1 gene − 20819 23652 2834 Locate
rpoB gene − 23679 26891 3213 Locate
trnC-GCA gene + 28081 28151 71 Locate
petN gene + 28314 28403 90 Locate
psbM gene − 29395 29499 105 Locate
trnD-GUC gene − 30018 30091 74 Locate
trnY-GUA gene − 30202 30285 84 Locate
trnE-UUC gene − 30363 30435 73 Locate
trnT-GGU gene + 31045 31116 72 Locate
psbD gene + 32434 33495 1062 Locate
psbC gene + 33443 34864 1422 Locate
trnS-UGA gene − 35100 35192 93 Locate
psbZ gene + 35533 35721 189 Locate
trnG-GCC gene + 35966 36036 71 Locate
trnfM-CAU gene − 36226 36299 74 Locate
rps14 gene − 36445 36747 303 Locate
psaB gene − 36870 39074 2205 Locate
psaA gene − 39100 41352 2253 Locate
ycf3 gene − 42127 44074 1948 Locate
trnS-GGA gene + 44933 45019 87 Locate
rps4 gene − 45316 45921 606 Locate
trnT-UGU gene − 46316 46388 73 Locate
trnL-UAA gene + 47074 47637 564 Locate
trnF-GAA gene + 47931 48003 73 Locate
ndhJ gene − 48671 49147 477 Locate
ndhK gene − 49258 49935 678 Locate
ndhC gene − 49987 50349 363 Locate
trnV-UAC gene − 51306 51961 656 Locate
trnM-CAU gene + 52142 52214 73 Locate
atpE gene − 52415 52816 402 Locate
atpB gene − 52813 54309 1497 Locate
rbcL gene + 55100 56533 1434 Locate
accD gene + 57232 58713 1482 Locate
psaI gene + 59420 59530 111 Locate
ycf4 gene + 59978 60532 555 Locate
cemA gene + 61116 61805 690 Locate
petA gene + 62020 62982 963 Locate
psbJ gene − 64021 64143 123 Locate
psbL gene − 64278 64394 117 Locate
psbF gene − 64418 64537 120 Locate
psbE gene − 64552 64803 252 Locate
petL gene + 65715 65810 96 Locate
petG gene + 65985 66098 114 Locate
trnW-CCA gene − 66221 66294 74 Locate
trnP-UGG gene − 66463 66536 74 Locate
psaJ gene + 66818 66952 135 Locate
rpl33 gene + 67414 67614 201 Locate
rps18 gene + 67781 68086 306 Locate
rpl20 gene − 68321 68707 387 Locate
rps12 gene − 69442 69555 114 Locate
clpP gene − 69674 71590 1917 Locate
psbB gene + 72062 73588 1527 Locate
psbT gene + 73772 73873 102 Locate
psbN gene − 73939 74070 132 Locate
psbH gene + 74176 74394 219 Locate
petB gene + 74520 75886 1367 Locate
petD gene + 76075 77267 1193 Locate
rpoA gene − 77444 78451 1008 Locate
rps11 gene − 78523 78939 417 Locate
rpl36 gene − 79055 79168 114 Locate
infA gene − 79264 79497 234 Locate
rps8 gene − 79624 80028 405 Locate
rpl14 gene − 80211 80579 369 Locate
rpl16 gene − 80713 81980 1268 Locate
rps3 gene − 82124 82786 663 Locate
rpl22 gene − 82771 83244 474 Locate
rps19 gene − 83309 83587 279 Locate
rpl2 gene − 83655 85133 1479 Locate
rpl23 gene − 85152 85433 282 Locate
trnI-CAU gene − 85599 85672 74 Locate
ycf2 gene + 85767 92603 6837 Locate
ycf15 gene + 92793 92942 150 Locate
trnL-CAA gene − 93203 93283 81 Locate
ndhB gene − 93855 96062 2208 Locate
rps7 gene − 96333 96800 468 Locate
rps12 gene − 96854 97646 793 Locate
trnV-GAC gene + 99308 99379 72 Locate
rrn16 gene + 99606 101096 1491 Locate
trnI-GAU gene + 101394 102412 1019 Locate
trnA-UGC gene + 102477 103355 879 Locate
rrn23 gene + 103527 106337 2811 Locate
rrn4.5 gene + 106436 106538 103 Locate
rrn5 gene + 106794 106914 121 Locate
trnR-ACG gene + 107158 107231 74 Locate
trnN-GUU gene − 107798 107869 72 Locate
ycf1 gene + 108211 109341 1131 Locate
ndhF gene − 109235 111466 2232 Locate
rpl32 gene + 111942 112112 171 Locate
trnL-UAG gene + 112877 112956 80 Locate
ccsA gene + 113045 114016 972 Locate
ndhD gene − 114248 115777 1530 Locate
psaC gene − 115868 116113 246 Locate
ndhE gene − 116369 116674 306 Locate
ndhG gene − 116889 117419 531 Locate
ndhI gene − 117778 118284 507 Locate
ndhA gene − 118365 120496 2132 Locate
ndhH gene − 120498 121679 1182 Locate
rps15 gene − 121794 122066 273 Locate
ycf1 gene − 122496 128018 5523 Locate
trnN-GUU gene + 128360 128431 72 Locate
trnR-ACG gene − 128998 129071 74 Locate
rrn5 gene − 129315 129435 121 Locate
rrn4.5 gene − 129691 129793 103 Locate
rrn23 gene − 129892 132702 2811 Locate
trnA-UGC gene − 132874 133752 879 Locate
trnI-GAU gene − 133817 134835 1019 Locate
rrn16 gene − 135133 136623 1491 Locate
trnV-GAC gene − 136850 136921 72 Locate
rps12 gene + 138583 139375 793 Locate
rps7 gene + 139429 139896 468 Locate
ndhB gene + 140167 142374 2208 Locate
trnL-CAA gene + 142946 143026 81 Locate
ycf15 gene − 143287 143436 150 Locate
ycf2 gene − 143626 150462 6837 Locate
trnI-CAU gene + 150557 150630 74 Locate
rpl23 gene + 150796 151077 282 Locate
rpl2 gene + 151096 152574 1479 Locate
Status Available
Accession ON858903.1
Length 152,684 bp
GC content 37.6%
Annotated genes 132
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Atp Synthase 6 Ribosomal Protein 25 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources