Isodon longitubus chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · NC_067695.1 · 11–85 bp · −
psbA · NC_067695.1 · 389–1,447 bp · −
trnK-UUU · NC_067695.1 · 1,679–4,259 bp · −
matK · NC_067695.1 · 1,999–3,519 bp · −
OOC04_pgp086 · NC_067695.1 · 4,785–5,930 bp · −
trnQ-UUG · NC_067695.1 · 6,876–6,947 bp · −
trnS-GCU · NC_067695.1 · 8,181–8,268 bp · −
atpA · NC_067695.1 · 10,160–11,683 bp · −
atpF · NC_067695.1 · 11,788–13,033 bp · −
atpH · NC_067695.1 · 13,325–13,570 bp · −
atpI · NC_067695.1 · 14,544–15,287 bp · −
rps2 · NC_067695.1 · 15,513–16,223 bp · −
rpoC2 · NC_067695.1 · 16,438–20,619 bp · −
rpoC1 · NC_067695.1 · 20,784–23,617 bp · −
rpoB · NC_067695.1 · 23,644–26,856 bp · −
psbM · NC_067695.1 · 29,369–29,473 bp · −
trnD-GUC · NC_067695.1 · 29,992–30,065 bp · −
trnY-GUA · NC_067695.1 · 30,176–30,259 bp · −
trnE-UUC · NC_067695.1 · 30,337–30,409 bp · −
trnS-UGA · NC_067695.1 · 35,078–35,170 bp · −
trnfM-CAU · NC_067695.1 · 36,210–36,283 bp · −
rps14 · NC_067695.1 · 36,429–36,731 bp · −
psaB · NC_067695.1 · 36,854–39,058 bp · −
psaA · NC_067695.1 · 39,084–41,336 bp · −
ycf3 · NC_067695.1 · 42,103–44,050 bp · −
rps4 · NC_067695.1 · 45,297–45,902 bp · −
trnT-UGU · NC_067695.1 · 46,332–46,404 bp · −
ndhJ · NC_067695.1 · 48,681–49,157 bp · −
ndhK · NC_067695.1 · 49,268–49,945 bp · −
ndhC · NC_067695.1 · 49,997–50,359 bp · −
trnV-UAC · NC_067695.1 · 51,305–51,961 bp · −
atpE · NC_067695.1 · 52,415–52,816 bp · −
atpB · NC_067695.1 · 52,813–54,309 bp · −
psbJ · NC_067695.1 · 64,042–64,164 bp · −
psbL · NC_067695.1 · 64,299–64,415 bp · −
psbF · NC_067695.1 · 64,439–64,558 bp · −
psbE · NC_067695.1 · 64,573–64,824 bp · −
trnW-CCA · NC_067695.1 · 66,223–66,296 bp · −
trnP-UGG · NC_067695.1 · 66,465–66,538 bp · −
rpl20 · NC_067695.1 · 68,321–68,707 bp · −
rps12 · NC_067695.1 · 69,439–69,552 bp · −
rps12 · NC_067695.1 · 96,849–97,641 bp · −
clpP · NC_067695.1 · 69,671–71,585 bp · −
psbN · NC_067695.1 · 73,936–74,067 bp · −
rpoA · NC_067695.1 · 77,440–78,453 bp · −
rps11 · NC_067695.1 · 78,525–78,941 bp · −
rpl36 · NC_067695.1 · 79,057–79,170 bp · −
infA · NC_067695.1 · 79,266–79,499 bp · −
rps8 · NC_067695.1 · 79,625–80,029 bp · −
rpl14 · NC_067695.1 · 80,212–80,580 bp · −
rpl16 · NC_067695.1 · 80,714–81,981 bp · −
rps3 · NC_067695.1 · 82,125–82,787 bp · −
rpl22 · NC_067695.1 · 82,772–83,245 bp · −
rps19 · NC_067695.1 · 83,310–83,588 bp · −
rpl2 · NC_067695.1 · 83,656–85,134 bp · −
rpl23 · NC_067695.1 · 85,153–85,434 bp · −
trnI-CAU · NC_067695.1 · 85,600–85,673 bp · −
trnL-CAA · NC_067695.1 · 93,198–93,278 bp · −
ndhB · NC_067695.1 · 93,850–96,057 bp · −
rps7 · NC_067695.1 · 96,328–96,795 bp · −
trnN-GUU · NC_067695.1 · 107,794–107,865 bp · −
ndhF · NC_067695.1 · 109,231–111,462 bp · −
ndhD · NC_067695.1 · 114,236–115,765 bp · −
psaC · NC_067695.1 · 115,856–116,101 bp · −
ndhE · NC_067695.1 · 116,357–116,662 bp · −
ndhG · NC_067695.1 · 116,877–117,407 bp · −
ndhI · NC_067695.1 · 117,767–118,273 bp · −
ndhA · NC_067695.1 · 118,354–120,477 bp · −
ndhH · NC_067695.1 · 120,479–121,660 bp · −
rps15 · NC_067695.1 · 121,775–122,047 bp · −
ycf1 · NC_067695.1 · 122,477–127,999 bp · −
trnR-ACG · NC_067695.1 · 128,979–129,052 bp · −
rrn5 · NC_067695.1 · 129,296–129,416 bp · −
rrn4.5 · NC_067695.1 · 129,672–129,774 bp · −
rrn23 · NC_067695.1 · 129,873–132,683 bp · −
trnA-UGC · NC_067695.1 · 132,855–133,733 bp · −
trnI-GAU · NC_067695.1 · 133,798–134,816 bp · −
rrn16 · NC_067695.1 · 135,114–136,604 bp · −
trnV-GAC · NC_067695.1 · 136,831–136,902 bp · −
ycf15 · NC_067695.1 · 143,269–143,418 bp · −
ycf2 · NC_067695.1 · 143,608–150,438 bp · −
psbK · NC_067695.1 · 7,341–7,526 bp · +
psbI · NC_067695.1 · 7,914–8,024 bp · +
trnG-UCC · NC_067695.1 · 9,036–9,794 bp · +
trnR-UCU · NC_067695.1 · 9,985–10,056 bp · +
trnC-GCA · NC_067695.1 · 28,046–28,116 bp · +
petN · NC_067695.1 · 28,279–28,368 bp · +
trnT-GGU · NC_067695.1 · 31,020–31,091 bp · +
psbD · NC_067695.1 · 32,409–33,470 bp · +
psbC · NC_067695.1 · 33,418–34,839 bp · +
psbZ · NC_067695.1 · 35,511–35,699 bp · +
trnG-GCC · NC_067695.1 · 35,944–36,020 bp · +
trnS-GGA · NC_067695.1 · 44,914–45,000 bp · +
trnL-UAA · NC_067695.1 · 47,083–47,647 bp · +
trnF-GAA · NC_067695.1 · 47,941–48,013 bp · +
trnM-CAU · NC_067695.1 · 52,142–52,214 bp · +
rbcL · NC_067695.1 · 55,101–56,534 bp · +
accD · NC_067695.1 · 57,251–58,732 bp · +
psaI · NC_067695.1 · 59,434–59,544 bp · +
ycf4 · NC_067695.1 · 59,991–60,545 bp · +
cemA · NC_067695.1 · 61,136–61,825 bp · +
petA · NC_067695.1 · 62,040–63,002 bp · +
petL · NC_067695.1 · 65,717–65,812 bp · +
petG · NC_067695.1 · 65,987–66,100 bp · +
psaJ · NC_067695.1 · 66,817–66,951 bp · +
rpl33 · NC_067695.1 · 67,413–67,613 bp · +
rps18 · NC_067695.1 · 67,780–68,085 bp · +
rps12 · NC_067695.1 · 138,565–139,357 bp · +
psbB · NC_067695.1 · 72,058–73,584 bp · +
psbT · NC_067695.1 · 73,769–73,870 bp · +
psbH · NC_067695.1 · 74,173–74,391 bp · +
petB · NC_067695.1 · 74,517–75,882 bp · +
petD · NC_067695.1 · 76,071–77,263 bp · +
ycf2 · NC_067695.1 · 85,768–92,598 bp · +
ycf15 · NC_067695.1 · 92,788–92,937 bp · +
trnV-GAC · NC_067695.1 · 99,304–99,375 bp · +
rrn16 · NC_067695.1 · 99,602–101,092 bp · +
trnI-GAU · NC_067695.1 · 101,390–102,408 bp · +
trnA-UGC · NC_067695.1 · 102,473–103,351 bp · +
rrn23 · NC_067695.1 · 103,523–106,333 bp · +
rrn4.5 · NC_067695.1 · 106,432–106,534 bp · +
rrn5 · NC_067695.1 · 106,790–106,910 bp · +
trnR-ACG · NC_067695.1 · 107,154–107,227 bp · +
ycf1 · NC_067695.1 · 108,207–109,337 bp · +
rpl32 · NC_067695.1 · 111,931–112,101 bp · +
trnL-UAG · NC_067695.1 · 112,865–112,944 bp · +
ccsA · NC_067695.1 · 113,033–114,004 bp · +
trnN-GUU · NC_067695.1 · 128,341–128,412 bp · +
rps7 · NC_067695.1 · 139,411–139,878 bp · +
ndhB · NC_067695.1 · 140,149–142,356 bp · +
trnL-CAA · NC_067695.1 · 142,928–143,008 bp · +
trnI-CAU · NC_067695.1 · 150,533–150,606 bp · +
rpl23 · NC_067695.1 · 150,772–151,053 bp · +
rpl2 · NC_067695.1 · 151,072–152,550 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Isodon longitubus
ANNOTATED PLASTOME
NC_067695.1
152,660 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
ATP synthase
Ribosomal protein
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38165 76330 114495 152660 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK OOC04_pgp086 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 11 85 75 Locate
psbA gene − 389 1447 1059 Locate
trnK-UUU gene − 1679 4259 2581 Locate
matK gene − 1999 3519 1521 Locate
OOC04_pgp086 gene − 4785 5930 1146 Locate
trnQ-UUG gene − 6876 6947 72 Locate
psbK gene + 7341 7526 186 Locate
psbI gene + 7914 8024 111 Locate
trnS-GCU gene − 8181 8268 88 Locate
trnG-UCC gene + 9036 9794 759 Locate
trnR-UCU gene + 9985 10056 72 Locate
atpA gene − 10160 11683 1524 Locate
atpF gene − 11788 13033 1246 Locate
atpH gene − 13325 13570 246 Locate
atpI gene − 14544 15287 744 Locate
rps2 gene − 15513 16223 711 Locate
rpoC2 gene − 16438 20619 4182 Locate
rpoC1 gene − 20784 23617 2834 Locate
rpoB gene − 23644 26856 3213 Locate
trnC-GCA gene + 28046 28116 71 Locate
petN gene + 28279 28368 90 Locate
psbM gene − 29369 29473 105 Locate
trnD-GUC gene − 29992 30065 74 Locate
trnY-GUA gene − 30176 30259 84 Locate
trnE-UUC gene − 30337 30409 73 Locate
trnT-GGU gene + 31020 31091 72 Locate
psbD gene + 32409 33470 1062 Locate
psbC gene + 33418 34839 1422 Locate
trnS-UGA gene − 35078 35170 93 Locate
psbZ gene + 35511 35699 189 Locate
trnG-GCC gene + 35944 36020 77 Locate
trnfM-CAU gene − 36210 36283 74 Locate
rps14 gene − 36429 36731 303 Locate
psaB gene − 36854 39058 2205 Locate
psaA gene − 39084 41336 2253 Locate
ycf3 gene − 42103 44050 1948 Locate
trnS-GGA gene + 44914 45000 87 Locate
rps4 gene − 45297 45902 606 Locate
trnT-UGU gene − 46332 46404 73 Locate
trnL-UAA gene + 47083 47647 565 Locate
trnF-GAA gene + 47941 48013 73 Locate
ndhJ gene − 48681 49157 477 Locate
ndhK gene − 49268 49945 678 Locate
ndhC gene − 49997 50359 363 Locate
trnV-UAC gene − 51305 51961 657 Locate
trnM-CAU gene + 52142 52214 73 Locate
atpE gene − 52415 52816 402 Locate
atpB gene − 52813 54309 1497 Locate
rbcL gene + 55101 56534 1434 Locate
accD gene + 57251 58732 1482 Locate
psaI gene + 59434 59544 111 Locate
ycf4 gene + 59991 60545 555 Locate
cemA gene + 61136 61825 690 Locate
petA gene + 62040 63002 963 Locate
psbJ gene − 64042 64164 123 Locate
psbL gene − 64299 64415 117 Locate
psbF gene − 64439 64558 120 Locate
psbE gene − 64573 64824 252 Locate
petL gene + 65717 65812 96 Locate
petG gene + 65987 66100 114 Locate
trnW-CCA gene − 66223 66296 74 Locate
trnP-UGG gene − 66465 66538 74 Locate
psaJ gene + 66817 66951 135 Locate
rpl33 gene + 67413 67613 201 Locate
rps18 gene + 67780 68085 306 Locate
rpl20 gene − 68321 68707 387 Locate
rps12 gene − 69439 69552 114 Locate
clpP gene − 69671 71585 1915 Locate
psbB gene + 72058 73584 1527 Locate
psbT gene + 73769 73870 102 Locate
psbN gene − 73936 74067 132 Locate
psbH gene + 74173 74391 219 Locate
petB gene + 74517 75882 1366 Locate
petD gene + 76071 77263 1193 Locate
rpoA gene − 77440 78453 1014 Locate
rps11 gene − 78525 78941 417 Locate
rpl36 gene − 79057 79170 114 Locate
infA gene − 79266 79499 234 Locate
rps8 gene − 79625 80029 405 Locate
rpl14 gene − 80212 80580 369 Locate
rpl16 gene − 80714 81981 1268 Locate
rps3 gene − 82125 82787 663 Locate
rpl22 gene − 82772 83245 474 Locate
rps19 gene − 83310 83588 279 Locate
rpl2 gene − 83656 85134 1479 Locate
rpl23 gene − 85153 85434 282 Locate
trnI-CAU gene − 85600 85673 74 Locate
ycf2 gene + 85768 92598 6831 Locate
ycf15 gene + 92788 92937 150 Locate
trnL-CAA gene − 93198 93278 81 Locate
ndhB gene − 93850 96057 2208 Locate
rps7 gene − 96328 96795 468 Locate
rps12 gene − 96849 97641 793 Locate
trnV-GAC gene + 99304 99375 72 Locate
rrn16 gene + 99602 101092 1491 Locate
trnI-GAU gene + 101390 102408 1019 Locate
trnA-UGC gene + 102473 103351 879 Locate
rrn23 gene + 103523 106333 2811 Locate
rrn4.5 gene + 106432 106534 103 Locate
rrn5 gene + 106790 106910 121 Locate
trnR-ACG gene + 107154 107227 74 Locate
trnN-GUU gene − 107794 107865 72 Locate
ycf1 gene + 108207 109337 1131 Locate
ndhF gene − 109231 111462 2232 Locate
rpl32 gene + 111931 112101 171 Locate
trnL-UAG gene + 112865 112944 80 Locate
ccsA gene + 113033 114004 972 Locate
ndhD gene − 114236 115765 1530 Locate
psaC gene − 115856 116101 246 Locate
ndhE gene − 116357 116662 306 Locate
ndhG gene − 116877 117407 531 Locate
ndhI gene − 117767 118273 507 Locate
ndhA gene − 118354 120477 2124 Locate
ndhH gene − 120479 121660 1182 Locate
rps15 gene − 121775 122047 273 Locate
ycf1 gene − 122477 127999 5523 Locate
trnN-GUU gene + 128341 128412 72 Locate
trnR-ACG gene − 128979 129052 74 Locate
rrn5 gene − 129296 129416 121 Locate
rrn4.5 gene − 129672 129774 103 Locate
rrn23 gene − 129873 132683 2811 Locate
trnA-UGC gene − 132855 133733 879 Locate
trnI-GAU gene − 133798 134816 1019 Locate
rrn16 gene − 135114 136604 1491 Locate
trnV-GAC gene − 136831 136902 72 Locate
rps12 gene + 138565 139357 793 Locate
rps7 gene + 139411 139878 468 Locate
ndhB gene + 140149 142356 2208 Locate
trnL-CAA gene + 142928 143008 81 Locate
ycf15 gene − 143269 143418 150 Locate
ycf2 gene − 143608 150438 6831 Locate
trnI-CAU gene + 150533 150606 74 Locate
rpl23 gene + 150772 151053 282 Locate
rpl2 gene + 151072 152550 1479 Locate
Status Available
Accession NC_067695.1
Length 152,660 bp
GC content 37.6%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 16 Atp Synthase 6 Ribosomal Protein 25 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources