Isodon loxothyrsus chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · NC_067667.1 · 11–85 bp · −
psbA · NC_067667.1 · 393–1,451 bp · −
trnK-UUU · NC_067667.1 · 1,683–4,264 bp · −
matK · NC_067667.1 · 2,004–3,524 bp · −
OOC30_pgp086 · NC_067667.1 · 4,790–5,935 bp · −
trnQ-UUG · NC_067667.1 · 6,875–6,946 bp · −
trnS-GCU · NC_067667.1 · 8,180–8,267 bp · −
atpA · NC_067667.1 · 10,164–11,687 bp · −
atpF · NC_067667.1 · 11,797–13,042 bp · −
atpH · NC_067667.1 · 13,334–13,579 bp · −
atpI · NC_067667.1 · 14,580–15,323 bp · −
rps2 · NC_067667.1 · 15,549–16,259 bp · −
rpoC2 · NC_067667.1 · 16,476–20,657 bp · −
rpoC1 · NC_067667.1 · 20,822–23,655 bp · −
rpoB · NC_067667.1 · 23,682–26,894 bp · −
psbM · NC_067667.1 · 29,397–29,501 bp · −
trnD-GUC · NC_067667.1 · 30,020–30,093 bp · −
trnY-GUA · NC_067667.1 · 30,204–30,287 bp · −
trnE-UUC · NC_067667.1 · 30,365–30,437 bp · −
trnS-UGA · NC_067667.1 · 35,102–35,194 bp · −
trnfM-CAU · NC_067667.1 · 36,226–36,299 bp · −
rps14 · NC_067667.1 · 36,445–36,747 bp · −
psaB · NC_067667.1 · 36,870–39,074 bp · −
psaA · NC_067667.1 · 39,100–41,352 bp · −
ycf3 · NC_067667.1 · 42,121–44,068 bp · −
rps4 · NC_067667.1 · 45,319–45,924 bp · −
trnT-UGU · NC_067667.1 · 46,319–46,391 bp · −
ndhJ · NC_067667.1 · 48,675–49,151 bp · −
ndhK · NC_067667.1 · 49,262–49,939 bp · −
ndhC · NC_067667.1 · 49,991–50,353 bp · −
trnV-UAC · NC_067667.1 · 51,305–51,961 bp · −
atpE · NC_067667.1 · 52,415–52,816 bp · −
atpB · NC_067667.1 · 52,813–54,309 bp · −
psbJ · NC_067667.1 · 64,009–64,131 bp · −
psbL · NC_067667.1 · 64,266–64,382 bp · −
psbF · NC_067667.1 · 64,406–64,525 bp · −
psbE · NC_067667.1 · 64,540–64,791 bp · −
trnW-CCA · NC_067667.1 · 66,190–66,263 bp · −
trnP-UGG · NC_067667.1 · 66,432–66,505 bp · −
rpl20 · NC_067667.1 · 68,292–68,678 bp · −
rps12 · NC_067667.1 · 69,415–69,528 bp · −
rps12 · NC_067667.1 · 96,822–97,614 bp · −
clpP · NC_067667.1 · 69,647–71,564 bp · −
psbN · NC_067667.1 · 73,914–74,045 bp · −
rpoA · NC_067667.1 · 77,413–78,426 bp · −
rps11 · NC_067667.1 · 78,498–78,914 bp · −
rpl36 · NC_067667.1 · 79,030–79,143 bp · −
infA · NC_067667.1 · 79,239–79,472 bp · −
rps8 · NC_067667.1 · 79,599–80,003 bp · −
rpl14 · NC_067667.1 · 80,186–80,554 bp · −
rpl16 · NC_067667.1 · 80,687–81,954 bp · −
rps3 · NC_067667.1 · 82,098–82,760 bp · −
rpl22 · NC_067667.1 · 82,745–83,218 bp · −
rps19 · NC_067667.1 · 83,283–83,561 bp · −
rpl2 · NC_067667.1 · 83,629–85,107 bp · −
rpl23 · NC_067667.1 · 85,126–85,407 bp · −
trnI-CAU · NC_067667.1 · 85,573–85,646 bp · −
trnL-CAA · NC_067667.1 · 93,171–93,251 bp · −
ndhB · NC_067667.1 · 93,823–96,030 bp · −
rps7 · NC_067667.1 · 96,301–96,768 bp · −
trnN-GUU · NC_067667.1 · 107,766–107,837 bp · −
ndhF · NC_067667.1 · 109,203–111,434 bp · −
ndhD · NC_067667.1 · 114,217–115,746 bp · −
psaC · NC_067667.1 · 115,837–116,082 bp · −
ndhE · NC_067667.1 · 116,338–116,643 bp · −
ndhG · NC_067667.1 · 116,858–117,388 bp · −
ndhI · NC_067667.1 · 117,748–118,254 bp · −
ndhA · NC_067667.1 · 118,335–120,458 bp · −
ndhH · NC_067667.1 · 120,460–121,641 bp · −
rps15 · NC_067667.1 · 121,756–122,028 bp · −
ycf1 · NC_067667.1 · 122,458–127,980 bp · −
trnR-ACG · NC_067667.1 · 128,960–129,033 bp · −
rrn5 · NC_067667.1 · 129,277–129,397 bp · −
rrn4.5 · NC_067667.1 · 129,653–129,755 bp · −
rrn23 · NC_067667.1 · 129,854–132,664 bp · −
trnA-UGC · NC_067667.1 · 132,836–133,714 bp · −
trnI-GAU · NC_067667.1 · 133,779–134,797 bp · −
rrn16 · NC_067667.1 · 135,095–136,585 bp · −
trnV-GAC · NC_067667.1 · 136,812–136,883 bp · −
ycf15 · NC_067667.1 · 143,249–143,398 bp · −
ycf2 · NC_067667.1 · 143,588–150,418 bp · −
psbK · NC_067667.1 · 7,340–7,525 bp · +
psbI · NC_067667.1 · 7,913–8,023 bp · +
trnG-UCC · NC_067667.1 · 9,038–9,798 bp · +
trnR-UCU · NC_067667.1 · 9,989–10,060 bp · +
trnC-GCA · NC_067667.1 · 28,083–28,153 bp · +
petN · NC_067667.1 · 28,316–28,405 bp · +
trnT-GGU · NC_067667.1 · 31,047–31,118 bp · +
psbD · NC_067667.1 · 32,436–33,497 bp · +
psbC · NC_067667.1 · 33,445–34,866 bp · +
psbZ · NC_067667.1 · 35,535–35,723 bp · +
trnG-GCC · NC_067667.1 · 35,968–36,038 bp · +
trnS-GGA · NC_067667.1 · 44,932–45,018 bp · +
trnL-UAA · NC_067667.1 · 47,077–47,641 bp · +
trnF-GAA · NC_067667.1 · 47,935–48,007 bp · +
trnM-CAU · NC_067667.1 · 52,142–52,214 bp · +
rbcL · NC_067667.1 · 55,100–56,533 bp · +
accD · NC_067667.1 · 57,223–58,704 bp · +
psaI · NC_067667.1 · 59,405–59,515 bp · +
ycf4 · NC_067667.1 · 59,966–60,520 bp · +
cemA · NC_067667.1 · 61,104–61,793 bp · +
petA · NC_067667.1 · 62,008–62,970 bp · +
petL · NC_067667.1 · 65,684–65,779 bp · +
petG · NC_067667.1 · 65,954–66,067 bp · +
psaJ · NC_067667.1 · 66,787–66,921 bp · +
rpl33 · NC_067667.1 · 67,383–67,583 bp · +
rps18 · NC_067667.1 · 67,750–68,055 bp · +
rps12 · NC_067667.1 · 138,545–139,337 bp · +
psbB · NC_067667.1 · 72,037–73,563 bp · +
psbT · NC_067667.1 · 73,747–73,848 bp · +
psbH · NC_067667.1 · 74,151–74,369 bp · +
petB · NC_067667.1 · 74,495–75,855 bp · +
petD · NC_067667.1 · 76,044–77,236 bp · +
ycf2 · NC_067667.1 · 85,741–92,571 bp · +
ycf15 · NC_067667.1 · 92,761–92,910 bp · +
trnV-GAC · NC_067667.1 · 99,276–99,347 bp · +
rrn16 · NC_067667.1 · 99,574–101,064 bp · +
trnI-GAU · NC_067667.1 · 101,362–102,380 bp · +
trnA-UGC · NC_067667.1 · 102,445–103,323 bp · +
rrn23 · NC_067667.1 · 103,495–106,305 bp · +
rrn4.5 · NC_067667.1 · 106,404–106,506 bp · +
rrn5 · NC_067667.1 · 106,762–106,882 bp · +
trnR-ACG · NC_067667.1 · 107,126–107,199 bp · +
ycf1 · NC_067667.1 · 108,179–109,309 bp · +
rpl32 · NC_067667.1 · 111,910–112,080 bp · +
trnL-UAG · NC_067667.1 · 112,846–112,925 bp · +
ccsA · NC_067667.1 · 113,014–113,985 bp · +
trnN-GUU · NC_067667.1 · 128,322–128,393 bp · +
rps7 · NC_067667.1 · 139,391–139,858 bp · +
ndhB · NC_067667.1 · 140,129–142,336 bp · +
trnL-CAA · NC_067667.1 · 142,908–142,988 bp · +
trnI-CAU · NC_067667.1 · 150,513–150,586 bp · +
rpl23 · NC_067667.1 · 150,752–151,033 bp · +
rpl2 · NC_067667.1 · 151,052–152,530 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Isodon loxothyrsus
ANNOTATED PLASTOME
NC_067667.1
152,640 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
ATP synthase
Ribosomal protein
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38160 76320 114480 152640 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK OOC30_pgp086 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 11 85 75 Locate
psbA gene − 393 1451 1059 Locate
trnK-UUU gene − 1683 4264 2582 Locate
matK gene − 2004 3524 1521 Locate
OOC30_pgp086 gene − 4790 5935 1146 Locate
trnQ-UUG gene − 6875 6946 72 Locate
psbK gene + 7340 7525 186 Locate
psbI gene + 7913 8023 111 Locate
trnS-GCU gene − 8180 8267 88 Locate
trnG-UCC gene + 9038 9798 761 Locate
trnR-UCU gene + 9989 10060 72 Locate
atpA gene − 10164 11687 1524 Locate
atpF gene − 11797 13042 1246 Locate
atpH gene − 13334 13579 246 Locate
atpI gene − 14580 15323 744 Locate
rps2 gene − 15549 16259 711 Locate
rpoC2 gene − 16476 20657 4182 Locate
rpoC1 gene − 20822 23655 2834 Locate
rpoB gene − 23682 26894 3213 Locate
trnC-GCA gene + 28083 28153 71 Locate
petN gene + 28316 28405 90 Locate
psbM gene − 29397 29501 105 Locate
trnD-GUC gene − 30020 30093 74 Locate
trnY-GUA gene − 30204 30287 84 Locate
trnE-UUC gene − 30365 30437 73 Locate
trnT-GGU gene + 31047 31118 72 Locate
psbD gene + 32436 33497 1062 Locate
psbC gene + 33445 34866 1422 Locate
trnS-UGA gene − 35102 35194 93 Locate
psbZ gene + 35535 35723 189 Locate
trnG-GCC gene + 35968 36038 71 Locate
trnfM-CAU gene − 36226 36299 74 Locate
rps14 gene − 36445 36747 303 Locate
psaB gene − 36870 39074 2205 Locate
psaA gene − 39100 41352 2253 Locate
ycf3 gene − 42121 44068 1948 Locate
trnS-GGA gene + 44932 45018 87 Locate
rps4 gene − 45319 45924 606 Locate
trnT-UGU gene − 46319 46391 73 Locate
trnL-UAA gene + 47077 47641 565 Locate
trnF-GAA gene + 47935 48007 73 Locate
ndhJ gene − 48675 49151 477 Locate
ndhK gene − 49262 49939 678 Locate
ndhC gene − 49991 50353 363 Locate
trnV-UAC gene − 51305 51961 657 Locate
trnM-CAU gene + 52142 52214 73 Locate
atpE gene − 52415 52816 402 Locate
atpB gene − 52813 54309 1497 Locate
rbcL gene + 55100 56533 1434 Locate
accD gene + 57223 58704 1482 Locate
psaI gene + 59405 59515 111 Locate
ycf4 gene + 59966 60520 555 Locate
cemA gene + 61104 61793 690 Locate
petA gene + 62008 62970 963 Locate
psbJ gene − 64009 64131 123 Locate
psbL gene − 64266 64382 117 Locate
psbF gene − 64406 64525 120 Locate
psbE gene − 64540 64791 252 Locate
petL gene + 65684 65779 96 Locate
petG gene + 65954 66067 114 Locate
trnW-CCA gene − 66190 66263 74 Locate
trnP-UGG gene − 66432 66505 74 Locate
psaJ gene + 66787 66921 135 Locate
rpl33 gene + 67383 67583 201 Locate
rps18 gene + 67750 68055 306 Locate
rpl20 gene − 68292 68678 387 Locate
rps12 gene − 69415 69528 114 Locate
clpP gene − 69647 71564 1918 Locate
psbB gene + 72037 73563 1527 Locate
psbT gene + 73747 73848 102 Locate
psbN gene − 73914 74045 132 Locate
psbH gene + 74151 74369 219 Locate
petB gene + 74495 75855 1361 Locate
petD gene + 76044 77236 1193 Locate
rpoA gene − 77413 78426 1014 Locate
rps11 gene − 78498 78914 417 Locate
rpl36 gene − 79030 79143 114 Locate
infA gene − 79239 79472 234 Locate
rps8 gene − 79599 80003 405 Locate
rpl14 gene − 80186 80554 369 Locate
rpl16 gene − 80687 81954 1268 Locate
rps3 gene − 82098 82760 663 Locate
rpl22 gene − 82745 83218 474 Locate
rps19 gene − 83283 83561 279 Locate
rpl2 gene − 83629 85107 1479 Locate
rpl23 gene − 85126 85407 282 Locate
trnI-CAU gene − 85573 85646 74 Locate
ycf2 gene + 85741 92571 6831 Locate
ycf15 gene + 92761 92910 150 Locate
trnL-CAA gene − 93171 93251 81 Locate
ndhB gene − 93823 96030 2208 Locate
rps7 gene − 96301 96768 468 Locate
rps12 gene − 96822 97614 793 Locate
trnV-GAC gene + 99276 99347 72 Locate
rrn16 gene + 99574 101064 1491 Locate
trnI-GAU gene + 101362 102380 1019 Locate
trnA-UGC gene + 102445 103323 879 Locate
rrn23 gene + 103495 106305 2811 Locate
rrn4.5 gene + 106404 106506 103 Locate
rrn5 gene + 106762 106882 121 Locate
trnR-ACG gene + 107126 107199 74 Locate
trnN-GUU gene − 107766 107837 72 Locate
ycf1 gene + 108179 109309 1131 Locate
ndhF gene − 109203 111434 2232 Locate
rpl32 gene + 111910 112080 171 Locate
trnL-UAG gene + 112846 112925 80 Locate
ccsA gene + 113014 113985 972 Locate
ndhD gene − 114217 115746 1530 Locate
psaC gene − 115837 116082 246 Locate
ndhE gene − 116338 116643 306 Locate
ndhG gene − 116858 117388 531 Locate
ndhI gene − 117748 118254 507 Locate
ndhA gene − 118335 120458 2124 Locate
ndhH gene − 120460 121641 1182 Locate
rps15 gene − 121756 122028 273 Locate
ycf1 gene − 122458 127980 5523 Locate
trnN-GUU gene + 128322 128393 72 Locate
trnR-ACG gene − 128960 129033 74 Locate
rrn5 gene − 129277 129397 121 Locate
rrn4.5 gene − 129653 129755 103 Locate
rrn23 gene − 129854 132664 2811 Locate
trnA-UGC gene − 132836 133714 879 Locate
trnI-GAU gene − 133779 134797 1019 Locate
rrn16 gene − 135095 136585 1491 Locate
trnV-GAC gene − 136812 136883 72 Locate
rps12 gene + 138545 139337 793 Locate
rps7 gene + 139391 139858 468 Locate
ndhB gene + 140129 142336 2208 Locate
trnL-CAA gene + 142908 142988 81 Locate
ycf15 gene − 143249 143398 150 Locate
ycf2 gene − 143588 150418 6831 Locate
trnI-CAU gene + 150513 150586 74 Locate
rpl23 gene + 150752 151033 282 Locate
rpl2 gene + 151052 152530 1479 Locate
Status Available
Accession NC_067667.1
Length 152,640 bp
GC content 37.6%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 16 Atp Synthase 6 Ribosomal Protein 25 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources