Isodon macrocalyx chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · NC_067666.1 · 11–85 bp · −
psbA · NC_067666.1 · 397–1,455 bp · −
trnK-UUU · NC_067666.1 · 1,687–4,267 bp · −
matK · NC_067666.1 · 2,007–3,527 bp · −
ON971_pgp086 · NC_067666.1 · 4,794–5,939 bp · −
trnQ-UUG · NC_067666.1 · 6,885–6,956 bp · −
trnS-GCU · NC_067666.1 · 8,190–8,277 bp · −
atpA · NC_067666.1 · 10,164–11,687 bp · −
atpF · NC_067666.1 · 11,796–13,042 bp · −
atpH · NC_067666.1 · 13,334–13,579 bp · −
atpI · NC_067666.1 · 14,580–15,323 bp · −
rps2 · NC_067666.1 · 15,554–16,264 bp · −
rpoC2 · NC_067666.1 · 16,482–20,663 bp · −
rpoC1 · NC_067666.1 · 20,828–23,661 bp · −
rpoB · NC_067666.1 · 23,688–26,900 bp · −
psbM · NC_067666.1 · 28,938–29,042 bp · −
trnD-GUC · NC_067666.1 · 29,553–29,626 bp · −
trnY-GUA · NC_067666.1 · 29,737–29,820 bp · −
trnE-UUC · NC_067666.1 · 29,898–29,970 bp · −
trnS-UGA · NC_067666.1 · 34,637–34,729 bp · −
trnfM-CAU · NC_067666.1 · 35,761–35,834 bp · −
rps14 · NC_067666.1 · 35,980–36,282 bp · −
psaB · NC_067666.1 · 36,405–38,609 bp · −
psaA · NC_067666.1 · 38,635–40,887 bp · −
ycf3 · NC_067666.1 · 41,663–43,610 bp · −
rps4 · NC_067666.1 · 44,855–45,460 bp · −
trnT-UGU · NC_067666.1 · 45,885–45,957 bp · −
ndhJ · NC_067666.1 · 48,242–48,718 bp · −
ndhK · NC_067666.1 · 48,829–49,506 bp · −
ndhC · NC_067666.1 · 49,558–49,920 bp · −
trnV-UAC · NC_067666.1 · 50,877–51,532 bp · −
atpE · NC_067666.1 · 51,986–52,387 bp · −
atpB · NC_067666.1 · 52,384–53,880 bp · −
psbJ · NC_067666.1 · 63,598–63,720 bp · −
psbL · NC_067666.1 · 63,855–63,971 bp · −
psbF · NC_067666.1 · 63,995–64,114 bp · −
psbE · NC_067666.1 · 64,129–64,380 bp · −
trnW-CCA · NC_067666.1 · 65,778–65,851 bp · −
trnP-UGG · NC_067666.1 · 66,020–66,093 bp · −
rpl20 · NC_067666.1 · 67,940–68,326 bp · −
rps12 · NC_067666.1 · 69,059–69,172 bp · −
rps12 · NC_067666.1 · 96,487–97,279 bp · −
clpP · NC_067666.1 · 69,291–71,227 bp · −
psbN · NC_067666.1 · 73,578–73,709 bp · −
rpoA · NC_067666.1 · 77,083–78,090 bp · −
rps11 · NC_067666.1 · 78,162–78,578 bp · −
rpl36 · NC_067666.1 · 78,694–78,807 bp · −
infA · NC_067666.1 · 78,903–79,136 bp · −
rps8 · NC_067666.1 · 79,263–79,667 bp · −
rpl14 · NC_067666.1 · 79,850–80,218 bp · −
rpl16 · NC_067666.1 · 80,352–81,619 bp · −
rps3 · NC_067666.1 · 81,763–82,425 bp · −
rpl22 · NC_067666.1 · 82,410–82,883 bp · −
rps19 · NC_067666.1 · 82,948–83,226 bp · −
rpl2 · NC_067666.1 · 83,294–84,772 bp · −
rpl23 · NC_067666.1 · 84,791–85,072 bp · −
trnI-CAU · NC_067666.1 · 85,238–85,311 bp · −
trnL-CAA · NC_067666.1 · 92,836–92,916 bp · −
ndhB · NC_067666.1 · 93,488–95,695 bp · −
rps7 · NC_067666.1 · 95,966–96,433 bp · −
trnN-GUU · NC_067666.1 · 107,431–107,502 bp · −
ndhF · NC_067666.1 · 108,868–111,099 bp · −
ndhD · NC_067666.1 · 113,875–115,404 bp · −
psaC · NC_067666.1 · 115,495–115,740 bp · −
ndhE · NC_067666.1 · 115,996–116,301 bp · −
ndhG · NC_067666.1 · 116,516–117,046 bp · −
ndhI · NC_067666.1 · 117,405–117,911 bp · −
ndhA · NC_067666.1 · 117,992–120,115 bp · −
ndhH · NC_067666.1 · 120,117–121,298 bp · −
rps15 · NC_067666.1 · 121,413–121,685 bp · −
ycf1 · NC_067666.1 · 122,115–127,637 bp · −
trnR-ACG · NC_067666.1 · 128,617–128,690 bp · −
rrn5 · NC_067666.1 · 128,934–129,054 bp · −
rrn4.5 · NC_067666.1 · 129,310–129,412 bp · −
rrn23 · NC_067666.1 · 129,511–132,321 bp · −
trnA-UGC · NC_067666.1 · 132,493–133,371 bp · −
trnI-GAU · NC_067666.1 · 133,436–134,454 bp · −
rrn16 · NC_067666.1 · 134,752–136,242 bp · −
trnV-GAC · NC_067666.1 · 136,469–136,540 bp · −
ycf15 · NC_067666.1 · 142,906–143,055 bp · −
ycf2 · NC_067666.1 · 143,245–150,075 bp · −
psbK · NC_067666.1 · 7,350–7,535 bp · +
psbI · NC_067666.1 · 7,923–8,033 bp · +
trnG-UCC · NC_067666.1 · 9,039–9,798 bp · +
trnR-UCU · NC_067666.1 · 9,989–10,060 bp · +
trnC-GCA · NC_067666.1 · 28,089–28,159 bp · +
petN · NC_067666.1 · 28,322–28,411 bp · +
trnT-GGU · NC_067666.1 · 30,580–30,651 bp · +
psbD · NC_067666.1 · 31,969–33,030 bp · +
psbC · NC_067666.1 · 32,978–34,399 bp · +
psbZ · NC_067666.1 · 35,070–35,258 bp · +
trnG-GCC · NC_067666.1 · 35,503–35,573 bp · +
trnS-GGA · NC_067666.1 · 44,472–44,558 bp · +
trnL-UAA · NC_067666.1 · 46,644–47,208 bp · +
trnF-GAA · NC_067666.1 · 47,502–47,574 bp · +
trnM-CAU · NC_067666.1 · 51,713–51,785 bp · +
rbcL · NC_067666.1 · 54,671–56,104 bp · +
accD · NC_067666.1 · 56,809–58,290 bp · +
psaI · NC_067666.1 · 58,991–59,101 bp · +
ycf4 · NC_067666.1 · 59,549–60,103 bp · +
cemA · NC_067666.1 · 60,694–61,383 bp · +
petA · NC_067666.1 · 61,598–62,560 bp · +
petL · NC_067666.1 · 65,272–65,367 bp · +
petG · NC_067666.1 · 65,542–65,655 bp · +
psaJ · NC_067666.1 · 66,375–66,509 bp · +
rpl33 · NC_067666.1 · 67,033–67,233 bp · +
rps18 · NC_067666.1 · 67,400–67,705 bp · +
rps12 · NC_067666.1 · 138,202–138,994 bp · +
psbB · NC_067666.1 · 71,700–73,226 bp · +
psbT · NC_067666.1 · 73,411–73,512 bp · +
psbH · NC_067666.1 · 73,815–74,033 bp · +
petB · NC_067666.1 · 74,159–75,525 bp · +
petD · NC_067666.1 · 75,714–76,906 bp · +
ycf2 · NC_067666.1 · 85,406–92,236 bp · +
ycf15 · NC_067666.1 · 92,426–92,575 bp · +
trnV-GAC · NC_067666.1 · 98,941–99,012 bp · +
rrn16 · NC_067666.1 · 99,239–100,729 bp · +
trnI-GAU · NC_067666.1 · 101,027–102,045 bp · +
trnA-UGC · NC_067666.1 · 102,110–102,988 bp · +
rrn23 · NC_067666.1 · 103,160–105,970 bp · +
rrn4.5 · NC_067666.1 · 106,069–106,171 bp · +
rrn5 · NC_067666.1 · 106,427–106,547 bp · +
trnR-ACG · NC_067666.1 · 106,791–106,864 bp · +
ycf1 · NC_067666.1 · 107,844–108,974 bp · +
rpl32 · NC_067666.1 · 111,568–111,738 bp · +
trnL-UAG · NC_067666.1 · 112,504–112,583 bp · +
ccsA · NC_067666.1 · 112,672–113,643 bp · +
trnN-GUU · NC_067666.1 · 127,979–128,050 bp · +
rps7 · NC_067666.1 · 139,048–139,515 bp · +
ndhB · NC_067666.1 · 139,786–141,993 bp · +
trnL-CAA · NC_067666.1 · 142,565–142,645 bp · +
trnI-CAU · NC_067666.1 · 150,170–150,243 bp · +
rpl23 · NC_067666.1 · 150,409–150,690 bp · +
rpl2 · NC_067666.1 · 150,709–152,187 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Isodon macrocalyx
ANNOTATED PLASTOME
NC_067666.1
152,297 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
ATP synthase
Ribosomal protein
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38074 76148 114223 152297 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK ON971_pgp086 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 11 85 75 Locate
psbA gene − 397 1455 1059 Locate
trnK-UUU gene − 1687 4267 2581 Locate
matK gene − 2007 3527 1521 Locate
ON971_pgp086 gene − 4794 5939 1146 Locate
trnQ-UUG gene − 6885 6956 72 Locate
psbK gene + 7350 7535 186 Locate
psbI gene + 7923 8033 111 Locate
trnS-GCU gene − 8190 8277 88 Locate
trnG-UCC gene + 9039 9798 760 Locate
trnR-UCU gene + 9989 10060 72 Locate
atpA gene − 10164 11687 1524 Locate
atpF gene − 11796 13042 1247 Locate
atpH gene − 13334 13579 246 Locate
atpI gene − 14580 15323 744 Locate
rps2 gene − 15554 16264 711 Locate
rpoC2 gene − 16482 20663 4182 Locate
rpoC1 gene − 20828 23661 2834 Locate
rpoB gene − 23688 26900 3213 Locate
trnC-GCA gene + 28089 28159 71 Locate
petN gene + 28322 28411 90 Locate
psbM gene − 28938 29042 105 Locate
trnD-GUC gene − 29553 29626 74 Locate
trnY-GUA gene − 29737 29820 84 Locate
trnE-UUC gene − 29898 29970 73 Locate
trnT-GGU gene + 30580 30651 72 Locate
psbD gene + 31969 33030 1062 Locate
psbC gene + 32978 34399 1422 Locate
trnS-UGA gene − 34637 34729 93 Locate
psbZ gene + 35070 35258 189 Locate
trnG-GCC gene + 35503 35573 71 Locate
trnfM-CAU gene − 35761 35834 74 Locate
rps14 gene − 35980 36282 303 Locate
psaB gene − 36405 38609 2205 Locate
psaA gene − 38635 40887 2253 Locate
ycf3 gene − 41663 43610 1948 Locate
trnS-GGA gene + 44472 44558 87 Locate
rps4 gene − 44855 45460 606 Locate
trnT-UGU gene − 45885 45957 73 Locate
trnL-UAA gene + 46644 47208 565 Locate
trnF-GAA gene + 47502 47574 73 Locate
ndhJ gene − 48242 48718 477 Locate
ndhK gene − 48829 49506 678 Locate
ndhC gene − 49558 49920 363 Locate
trnV-UAC gene − 50877 51532 656 Locate
trnM-CAU gene + 51713 51785 73 Locate
atpE gene − 51986 52387 402 Locate
atpB gene − 52384 53880 1497 Locate
rbcL gene + 54671 56104 1434 Locate
accD gene + 56809 58290 1482 Locate
psaI gene + 58991 59101 111 Locate
ycf4 gene + 59549 60103 555 Locate
cemA gene + 60694 61383 690 Locate
petA gene + 61598 62560 963 Locate
psbJ gene − 63598 63720 123 Locate
psbL gene − 63855 63971 117 Locate
psbF gene − 63995 64114 120 Locate
psbE gene − 64129 64380 252 Locate
petL gene + 65272 65367 96 Locate
petG gene + 65542 65655 114 Locate
trnW-CCA gene − 65778 65851 74 Locate
trnP-UGG gene − 66020 66093 74 Locate
psaJ gene + 66375 66509 135 Locate
rpl33 gene + 67033 67233 201 Locate
rps18 gene + 67400 67705 306 Locate
rpl20 gene − 67940 68326 387 Locate
rps12 gene − 69059 69172 114 Locate
clpP gene − 69291 71227 1937 Locate
psbB gene + 71700 73226 1527 Locate
psbT gene + 73411 73512 102 Locate
psbN gene − 73578 73709 132 Locate
psbH gene + 73815 74033 219 Locate
petB gene + 74159 75525 1367 Locate
petD gene + 75714 76906 1193 Locate
rpoA gene − 77083 78090 1008 Locate
rps11 gene − 78162 78578 417 Locate
rpl36 gene − 78694 78807 114 Locate
infA gene − 78903 79136 234 Locate
rps8 gene − 79263 79667 405 Locate
rpl14 gene − 79850 80218 369 Locate
rpl16 gene − 80352 81619 1268 Locate
rps3 gene − 81763 82425 663 Locate
rpl22 gene − 82410 82883 474 Locate
rps19 gene − 82948 83226 279 Locate
rpl2 gene − 83294 84772 1479 Locate
rpl23 gene − 84791 85072 282 Locate
trnI-CAU gene − 85238 85311 74 Locate
ycf2 gene + 85406 92236 6831 Locate
ycf15 gene + 92426 92575 150 Locate
trnL-CAA gene − 92836 92916 81 Locate
ndhB gene − 93488 95695 2208 Locate
rps7 gene − 95966 96433 468 Locate
rps12 gene − 96487 97279 793 Locate
trnV-GAC gene + 98941 99012 72 Locate
rrn16 gene + 99239 100729 1491 Locate
trnI-GAU gene + 101027 102045 1019 Locate
trnA-UGC gene + 102110 102988 879 Locate
rrn23 gene + 103160 105970 2811 Locate
rrn4.5 gene + 106069 106171 103 Locate
rrn5 gene + 106427 106547 121 Locate
trnR-ACG gene + 106791 106864 74 Locate
trnN-GUU gene − 107431 107502 72 Locate
ycf1 gene + 107844 108974 1131 Locate
ndhF gene − 108868 111099 2232 Locate
rpl32 gene + 111568 111738 171 Locate
trnL-UAG gene + 112504 112583 80 Locate
ccsA gene + 112672 113643 972 Locate
ndhD gene − 113875 115404 1530 Locate
psaC gene − 115495 115740 246 Locate
ndhE gene − 115996 116301 306 Locate
ndhG gene − 116516 117046 531 Locate
ndhI gene − 117405 117911 507 Locate
ndhA gene − 117992 120115 2124 Locate
ndhH gene − 120117 121298 1182 Locate
rps15 gene − 121413 121685 273 Locate
ycf1 gene − 122115 127637 5523 Locate
trnN-GUU gene + 127979 128050 72 Locate
trnR-ACG gene − 128617 128690 74 Locate
rrn5 gene − 128934 129054 121 Locate
rrn4.5 gene − 129310 129412 103 Locate
rrn23 gene − 129511 132321 2811 Locate
trnA-UGC gene − 132493 133371 879 Locate
trnI-GAU gene − 133436 134454 1019 Locate
rrn16 gene − 134752 136242 1491 Locate
trnV-GAC gene − 136469 136540 72 Locate
rps12 gene + 138202 138994 793 Locate
rps7 gene + 139048 139515 468 Locate
ndhB gene + 139786 141993 2208 Locate
trnL-CAA gene + 142565 142645 81 Locate
ycf15 gene − 142906 143055 150 Locate
ycf2 gene − 143245 150075 6831 Locate
trnI-CAU gene + 150170 150243 74 Locate
rpl23 gene + 150409 150690 282 Locate
rpl2 gene + 150709 152187 1479 Locate
Status Available
Accession NC_067666.1
Length 152,297 bp
GC content 37.6%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 16 Atp Synthase 6 Ribosomal Protein 25 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources