Isodon macrophyllus chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · NC_067669.1 · 11–85 bp · −
psbA · NC_067669.1 · 393–1,451 bp · −
trnK-UUU · NC_067669.1 · 1,683–4,263 bp · −
matK · NC_067669.1 · 2,003–3,523 bp · −
ON970_pgp086 · NC_067669.1 · 4,789–5,934 bp · −
trnQ-UUG · NC_067669.1 · 6,896–6,967 bp · −
trnS-GCU · NC_067669.1 · 8,200–8,287 bp · −
atpA · NC_067669.1 · 10,181–11,704 bp · −
atpF · NC_067669.1 · 11,813–13,058 bp · −
atpH · NC_067669.1 · 13,350–13,595 bp · −
atpI · NC_067669.1 · 14,526–15,269 bp · −
rps2 · NC_067669.1 · 15,495–16,205 bp · −
rpoC2 · NC_067669.1 · 16,421–20,593 bp · −
rpoC1 · NC_067669.1 · 20,758–23,591 bp · −
rpoB · NC_067669.1 · 23,618–26,830 bp · −
psbM · NC_067669.1 · 29,335–29,439 bp · −
trnD-GUC · NC_067669.1 · 29,958–30,031 bp · −
trnY-GUA · NC_067669.1 · 30,142–30,225 bp · −
trnE-UUC · NC_067669.1 · 30,303–30,375 bp · −
trnS-UGA · NC_067669.1 · 35,039–35,131 bp · −
trnfM-CAU · NC_067669.1 · 36,165–36,238 bp · −
rps14 · NC_067669.1 · 36,384–36,686 bp · −
psaB · NC_067669.1 · 36,809–39,013 bp · −
psaA · NC_067669.1 · 39,039–41,291 bp · −
ycf3 · NC_067669.1 · 42,066–44,013 bp · −
rps4 · NC_067669.1 · 45,260–45,865 bp · −
trnT-UGU · NC_067669.1 · 46,248–46,320 bp · −
ndhJ · NC_067669.1 · 48,609–49,085 bp · −
ndhK · NC_067669.1 · 49,196–49,873 bp · −
ndhC · NC_067669.1 · 49,925–50,287 bp · −
trnV-UAC · NC_067669.1 · 51,250–51,912 bp · −
atpE · NC_067669.1 · 52,366–52,767 bp · −
atpB · NC_067669.1 · 52,764–54,260 bp · −
psbJ · NC_067669.1 · 63,964–64,086 bp · −
psbL · NC_067669.1 · 64,221–64,337 bp · −
psbF · NC_067669.1 · 64,361–64,480 bp · −
psbE · NC_067669.1 · 64,495–64,746 bp · −
trnW-CCA · NC_067669.1 · 66,145–66,218 bp · −
trnP-UGG · NC_067669.1 · 66,387–66,460 bp · −
rpl20 · NC_067669.1 · 68,246–68,632 bp · −
rps12 · NC_067669.1 · 69,364–69,477 bp · −
rps12 · NC_067669.1 · 96,781–97,573 bp · −
clpP · NC_067669.1 · 69,596–71,511 bp · −
psbN · NC_067669.1 · 73,861–73,992 bp · −
rpoA · NC_067669.1 · 77,366–78,373 bp · −
rps11 · NC_067669.1 · 78,445–78,861 bp · −
rpl36 · NC_067669.1 · 78,977–79,090 bp · −
infA · NC_067669.1 · 79,186–79,419 bp · −
rps8 · NC_067669.1 · 79,546–79,950 bp · −
rpl14 · NC_067669.1 · 80,133–80,501 bp · −
rpl16 · NC_067669.1 · 80,635–81,902 bp · −
rps3 · NC_067669.1 · 82,046–82,708 bp · −
rpl22 · NC_067669.1 · 82,693–83,166 bp · −
rps19 · NC_067669.1 · 83,231–83,509 bp · −
rpl2 · NC_067669.1 · 83,588–85,066 bp · −
rpl23 · NC_067669.1 · 85,085–85,366 bp · −
trnI-CAU · NC_067669.1 · 85,532–85,605 bp · −
trnL-CAA · NC_067669.1 · 93,130–93,210 bp · −
ndhB · NC_067669.1 · 93,782–95,989 bp · −
rps7 · NC_067669.1 · 96,260–96,727 bp · −
trnN-GUU · NC_067669.1 · 107,716–107,787 bp · −
ndhF · NC_067669.1 · 109,153–111,384 bp · −
ndhD · NC_067669.1 · 114,166–115,695 bp · −
psaC · NC_067669.1 · 115,786–116,031 bp · −
ndhE · NC_067669.1 · 116,287–116,592 bp · −
ndhG · NC_067669.1 · 116,807–117,337 bp · −
ndhI · NC_067669.1 · 117,697–118,203 bp · −
ndhA · NC_067669.1 · 118,284–120,407 bp · −
ndhH · NC_067669.1 · 120,409–121,590 bp · −
rps15 · NC_067669.1 · 121,705–121,977 bp · −
ycf1 · NC_067669.1 · 122,412–127,934 bp · −
trnR-ACG · NC_067669.1 · 128,914–128,987 bp · −
rrn5 · NC_067669.1 · 129,231–129,351 bp · −
rrn4.5 · NC_067669.1 · 129,607–129,709 bp · −
rrn23 · NC_067669.1 · 129,808–132,618 bp · −
trnA-UGC · NC_067669.1 · 132,790–133,668 bp · −
trnI-GAU · NC_067669.1 · 133,733–134,742 bp · −
rrn16 · NC_067669.1 · 135,040–136,530 bp · −
trnV-GAC · NC_067669.1 · 136,757–136,828 bp · −
ycf15 · NC_067669.1 · 143,194–143,343 bp · −
ycf2 · NC_067669.1 · 143,533–150,363 bp · −
psbK · NC_067669.1 · 7,361–7,546 bp · +
psbI · NC_067669.1 · 7,934–8,044 bp · +
trnG-UCC · NC_067669.1 · 9,051–9,809 bp · +
trnR-UCU · NC_067669.1 · 10,000–10,071 bp · +
trnC-GCA · NC_067669.1 · 28,020–28,090 bp · +
petN · NC_067669.1 · 28,253–28,342 bp · +
trnT-GGU · NC_067669.1 · 30,985–31,056 bp · +
psbD · NC_067669.1 · 32,374–33,435 bp · +
psbC · NC_067669.1 · 33,383–34,804 bp · +
psbZ · NC_067669.1 · 35,472–35,660 bp · +
trnG-GCC · NC_067669.1 · 35,905–35,975 bp · +
trnS-GGA · NC_067669.1 · 44,877–44,963 bp · +
trnL-UAA · NC_067669.1 · 47,010–47,574 bp · +
trnF-GAA · NC_067669.1 · 47,868–47,940 bp · +
trnM-CAU · NC_067669.1 · 52,093–52,165 bp · +
rbcL · NC_067669.1 · 55,056–56,489 bp · +
accD · NC_067669.1 · 57,188–58,669 bp · +
psaI · NC_067669.1 · 59,370–59,480 bp · +
ycf4 · NC_067669.1 · 59,927–60,481 bp · +
cemA · NC_067669.1 · 61,065–61,754 bp · +
petA · NC_067669.1 · 61,969–62,931 bp · +
petL · NC_067669.1 · 65,639–65,734 bp · +
petG · NC_067669.1 · 65,909–66,022 bp · +
psaJ · NC_067669.1 · 66,742–66,876 bp · +
rpl33 · NC_067669.1 · 67,338–67,538 bp · +
rps18 · NC_067669.1 · 67,705–68,010 bp · +
rps12 · NC_067669.1 · 138,490–139,282 bp · +
psbB · NC_067669.1 · 71,984–73,510 bp · +
psbT · NC_067669.1 · 73,694–73,795 bp · +
psbH · NC_067669.1 · 74,098–74,316 bp · +
petB · NC_067669.1 · 74,442–75,808 bp · +
petD · NC_067669.1 · 75,997–77,189 bp · +
ycf2 · NC_067669.1 · 85,700–92,530 bp · +
ycf15 · NC_067669.1 · 92,720–92,869 bp · +
trnV-GAC · NC_067669.1 · 99,235–99,306 bp · +
rrn16 · NC_067669.1 · 99,533–101,023 bp · +
trnI-GAU · NC_067669.1 · 101,321–102,330 bp · +
trnA-UGC · NC_067669.1 · 102,395–103,273 bp · +
rrn23 · NC_067669.1 · 103,445–106,255 bp · +
rrn4.5 · NC_067669.1 · 106,354–106,456 bp · +
rrn5 · NC_067669.1 · 106,712–106,832 bp · +
trnR-ACG · NC_067669.1 · 107,076–107,149 bp · +
ycf1 · NC_067669.1 · 108,129–109,259 bp · +
rpl32 · NC_067669.1 · 111,860–112,030 bp · +
trnL-UAG · NC_067669.1 · 112,795–112,874 bp · +
ccsA · NC_067669.1 · 112,963–113,934 bp · +
trnN-GUU · NC_067669.1 · 128,276–128,347 bp · +
rps7 · NC_067669.1 · 139,336–139,803 bp · +
ndhB · NC_067669.1 · 140,074–142,281 bp · +
trnL-CAA · NC_067669.1 · 142,853–142,933 bp · +
trnI-CAU · NC_067669.1 · 150,458–150,531 bp · +
rpl23 · NC_067669.1 · 150,697–150,978 bp · +
rpl2 · NC_067669.1 · 150,997–152,475 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Isodon macrophyllus
ANNOTATED PLASTOME
NC_067669.1
152,596 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
ATP synthase
Ribosomal protein
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38149 76298 114447 152596 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK ON970_pgp086 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 11 85 75 Locate
psbA gene − 393 1451 1059 Locate
trnK-UUU gene − 1683 4263 2581 Locate
matK gene − 2003 3523 1521 Locate
ON970_pgp086 gene − 4789 5934 1146 Locate
trnQ-UUG gene − 6896 6967 72 Locate
psbK gene + 7361 7546 186 Locate
psbI gene + 7934 8044 111 Locate
trnS-GCU gene − 8200 8287 88 Locate
trnG-UCC gene + 9051 9809 759 Locate
trnR-UCU gene + 10000 10071 72 Locate
atpA gene − 10181 11704 1524 Locate
atpF gene − 11813 13058 1246 Locate
atpH gene − 13350 13595 246 Locate
atpI gene − 14526 15269 744 Locate
rps2 gene − 15495 16205 711 Locate
rpoC2 gene − 16421 20593 4173 Locate
rpoC1 gene − 20758 23591 2834 Locate
rpoB gene − 23618 26830 3213 Locate
trnC-GCA gene + 28020 28090 71 Locate
petN gene + 28253 28342 90 Locate
psbM gene − 29335 29439 105 Locate
trnD-GUC gene − 29958 30031 74 Locate
trnY-GUA gene − 30142 30225 84 Locate
trnE-UUC gene − 30303 30375 73 Locate
trnT-GGU gene + 30985 31056 72 Locate
psbD gene + 32374 33435 1062 Locate
psbC gene + 33383 34804 1422 Locate
trnS-UGA gene − 35039 35131 93 Locate
psbZ gene + 35472 35660 189 Locate
trnG-GCC gene + 35905 35975 71 Locate
trnfM-CAU gene − 36165 36238 74 Locate
rps14 gene − 36384 36686 303 Locate
psaB gene − 36809 39013 2205 Locate
psaA gene − 39039 41291 2253 Locate
ycf3 gene − 42066 44013 1948 Locate
trnS-GGA gene + 44877 44963 87 Locate
rps4 gene − 45260 45865 606 Locate
trnT-UGU gene − 46248 46320 73 Locate
trnL-UAA gene + 47010 47574 565 Locate
trnF-GAA gene + 47868 47940 73 Locate
ndhJ gene − 48609 49085 477 Locate
ndhK gene − 49196 49873 678 Locate
ndhC gene − 49925 50287 363 Locate
trnV-UAC gene − 51250 51912 663 Locate
trnM-CAU gene + 52093 52165 73 Locate
atpE gene − 52366 52767 402 Locate
atpB gene − 52764 54260 1497 Locate
rbcL gene + 55056 56489 1434 Locate
accD gene + 57188 58669 1482 Locate
psaI gene + 59370 59480 111 Locate
ycf4 gene + 59927 60481 555 Locate
cemA gene + 61065 61754 690 Locate
petA gene + 61969 62931 963 Locate
psbJ gene − 63964 64086 123 Locate
psbL gene − 64221 64337 117 Locate
psbF gene − 64361 64480 120 Locate
psbE gene − 64495 64746 252 Locate
petL gene + 65639 65734 96 Locate
petG gene + 65909 66022 114 Locate
trnW-CCA gene − 66145 66218 74 Locate
trnP-UGG gene − 66387 66460 74 Locate
psaJ gene + 66742 66876 135 Locate
rpl33 gene + 67338 67538 201 Locate
rps18 gene + 67705 68010 306 Locate
rpl20 gene − 68246 68632 387 Locate
rps12 gene − 69364 69477 114 Locate
clpP gene − 69596 71511 1916 Locate
psbB gene + 71984 73510 1527 Locate
psbT gene + 73694 73795 102 Locate
psbN gene − 73861 73992 132 Locate
psbH gene + 74098 74316 219 Locate
petB gene + 74442 75808 1367 Locate
petD gene + 75997 77189 1193 Locate
rpoA gene − 77366 78373 1008 Locate
rps11 gene − 78445 78861 417 Locate
rpl36 gene − 78977 79090 114 Locate
infA gene − 79186 79419 234 Locate
rps8 gene − 79546 79950 405 Locate
rpl14 gene − 80133 80501 369 Locate
rpl16 gene − 80635 81902 1268 Locate
rps3 gene − 82046 82708 663 Locate
rpl22 gene − 82693 83166 474 Locate
rps19 gene − 83231 83509 279 Locate
rpl2 gene − 83588 85066 1479 Locate
rpl23 gene − 85085 85366 282 Locate
trnI-CAU gene − 85532 85605 74 Locate
ycf2 gene + 85700 92530 6831 Locate
ycf15 gene + 92720 92869 150 Locate
trnL-CAA gene − 93130 93210 81 Locate
ndhB gene − 93782 95989 2208 Locate
rps7 gene − 96260 96727 468 Locate
rps12 gene − 96781 97573 793 Locate
trnV-GAC gene + 99235 99306 72 Locate
rrn16 gene + 99533 101023 1491 Locate
trnI-GAU gene + 101321 102330 1010 Locate
trnA-UGC gene + 102395 103273 879 Locate
rrn23 gene + 103445 106255 2811 Locate
rrn4.5 gene + 106354 106456 103 Locate
rrn5 gene + 106712 106832 121 Locate
trnR-ACG gene + 107076 107149 74 Locate
trnN-GUU gene − 107716 107787 72 Locate
ycf1 gene + 108129 109259 1131 Locate
ndhF gene − 109153 111384 2232 Locate
rpl32 gene + 111860 112030 171 Locate
trnL-UAG gene + 112795 112874 80 Locate
ccsA gene + 112963 113934 972 Locate
ndhD gene − 114166 115695 1530 Locate
psaC gene − 115786 116031 246 Locate
ndhE gene − 116287 116592 306 Locate
ndhG gene − 116807 117337 531 Locate
ndhI gene − 117697 118203 507 Locate
ndhA gene − 118284 120407 2124 Locate
ndhH gene − 120409 121590 1182 Locate
rps15 gene − 121705 121977 273 Locate
ycf1 gene − 122412 127934 5523 Locate
trnN-GUU gene + 128276 128347 72 Locate
trnR-ACG gene − 128914 128987 74 Locate
rrn5 gene − 129231 129351 121 Locate
rrn4.5 gene − 129607 129709 103 Locate
rrn23 gene − 129808 132618 2811 Locate
trnA-UGC gene − 132790 133668 879 Locate
trnI-GAU gene − 133733 134742 1010 Locate
rrn16 gene − 135040 136530 1491 Locate
trnV-GAC gene − 136757 136828 72 Locate
rps12 gene + 138490 139282 793 Locate
rps7 gene + 139336 139803 468 Locate
ndhB gene + 140074 142281 2208 Locate
trnL-CAA gene + 142853 142933 81 Locate
ycf15 gene − 143194 143343 150 Locate
ycf2 gene − 143533 150363 6831 Locate
trnI-CAU gene + 150458 150531 74 Locate
rpl23 gene + 150697 150978 282 Locate
rpl2 gene + 150997 152475 1479 Locate
Status Available
Accession NC_067669.1
Length 152,596 bp
GC content 37.6%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 16 Atp Synthase 6 Ribosomal Protein 25 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources