Isodon megathyrsus chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · NC_067671.1 · 11–85 bp · −
psbA · NC_067671.1 · 393–1,451 bp · −
trnK-UUU · NC_067671.1 · 1,683–4,263 bp · −
matK · NC_067671.1 · 2,003–3,523 bp · −
OOC28_pgp086 · NC_067671.1 · 4,790–5,935 bp · −
trnQ-UUG · NC_067671.1 · 6,881–6,952 bp · −
trnS-GCU · NC_067671.1 · 8,186–8,273 bp · −
atpA · NC_067671.1 · 10,161–11,684 bp · −
atpF · NC_067671.1 · 11,793–13,038 bp · −
atpH · NC_067671.1 · 13,330–13,575 bp · −
atpI · NC_067671.1 · 14,577–15,320 bp · −
rps2 · NC_067671.1 · 15,546–16,256 bp · −
rpoC2 · NC_067671.1 · 16,473–20,654 bp · −
rpoC1 · NC_067671.1 · 20,819–23,652 bp · −
rpoB · NC_067671.1 · 23,679–26,891 bp · −
psbM · NC_067671.1 · 29,395–29,499 bp · −
trnD-GUC · NC_067671.1 · 30,018–30,091 bp · −
trnY-GUA · NC_067671.1 · 30,202–30,285 bp · −
trnE-UUC · NC_067671.1 · 30,363–30,435 bp · −
trnS-UGA · NC_067671.1 · 35,119–35,211 bp · −
trnfM-CAU · NC_067671.1 · 36,243–36,316 bp · −
rps14 · NC_067671.1 · 36,462–36,764 bp · −
psaB · NC_067671.1 · 36,887–39,091 bp · −
psaA · NC_067671.1 · 39,117–41,369 bp · −
ycf3 · NC_067671.1 · 42,144–44,090 bp · −
rps4 · NC_067671.1 · 45,337–45,942 bp · −
trnT-UGU · NC_067671.1 · 46,367–46,439 bp · −
ndhJ · NC_067671.1 · 48,724–49,200 bp · −
ndhK · NC_067671.1 · 49,311–49,988 bp · −
ndhC · NC_067671.1 · 50,040–50,402 bp · −
trnV-UAC · NC_067671.1 · 51,359–52,013 bp · −
atpE · NC_067671.1 · 52,473–52,874 bp · −
atpB · NC_067671.1 · 52,871–54,367 bp · −
psbJ · NC_067671.1 · 64,074–64,196 bp · −
psbL · NC_067671.1 · 64,331–64,447 bp · −
psbF · NC_067671.1 · 64,471–64,590 bp · −
psbE · NC_067671.1 · 64,605–64,856 bp · −
trnW-CCA · NC_067671.1 · 66,255–66,328 bp · −
trnP-UGG · NC_067671.1 · 66,497–66,570 bp · −
rpl20 · NC_067671.1 · 68,355–68,741 bp · −
rps12 · NC_067671.1 · 69,476–69,589 bp · −
rps12 · NC_067671.1 · 96,888–97,680 bp · −
clpP · NC_067671.1 · 69,708–71,636 bp · −
psbN · NC_067671.1 · 73,986–74,117 bp · −
rpoA · NC_067671.1 · 77,485–78,492 bp · −
rps11 · NC_067671.1 · 78,563–78,979 bp · −
rpl36 · NC_067671.1 · 79,095–79,208 bp · −
infA · NC_067671.1 · 79,304–79,537 bp · −
rps8 · NC_067671.1 · 79,664–80,068 bp · −
rpl14 · NC_067671.1 · 80,251–80,619 bp · −
rpl16 · NC_067671.1 · 80,753–82,020 bp · −
rps3 · NC_067671.1 · 82,164–82,826 bp · −
rpl22 · NC_067671.1 · 82,811–83,284 bp · −
rps19 · NC_067671.1 · 83,349–83,627 bp · −
rpl2 · NC_067671.1 · 83,695–85,173 bp · −
rpl23 · NC_067671.1 · 85,192–85,473 bp · −
trnI-CAU · NC_067671.1 · 85,639–85,712 bp · −
trnL-CAA · NC_067671.1 · 93,237–93,317 bp · −
ndhB · NC_067671.1 · 93,889–96,096 bp · −
rps7 · NC_067671.1 · 96,367–96,834 bp · −
trnN-GUU · NC_067671.1 · 107,832–107,903 bp · −
ndhF · NC_067671.1 · 109,269–111,500 bp · −
ndhD · NC_067671.1 · 114,278–115,807 bp · −
psaC · NC_067671.1 · 115,898–116,143 bp · −
ndhE · NC_067671.1 · 116,399–116,704 bp · −
ndhG · NC_067671.1 · 116,919–117,449 bp · −
ndhI · NC_067671.1 · 117,809–118,315 bp · −
ndhA · NC_067671.1 · 118,396–120,519 bp · −
ndhH · NC_067671.1 · 120,521–121,702 bp · −
rps15 · NC_067671.1 · 121,817–122,089 bp · −
ycf1 · NC_067671.1 · 122,386–127,908 bp · −
trnR-ACG · NC_067671.1 · 128,888–128,961 bp · −
rrn5 · NC_067671.1 · 129,205–129,325 bp · −
rrn4.5 · NC_067671.1 · 129,581–129,683 bp · −
rrn23 · NC_067671.1 · 129,782–132,592 bp · −
trnA-UGC · NC_067671.1 · 132,764–133,642 bp · −
trnI-GAU · NC_067671.1 · 133,707–134,725 bp · −
rrn16 · NC_067671.1 · 135,023–136,513 bp · −
trnV-GAC · NC_067671.1 · 136,740–136,811 bp · −
ycf15 · NC_067671.1 · 143,177–143,326 bp · −
ycf2 · NC_067671.1 · 143,516–150,346 bp · −
psbK · NC_067671.1 · 7,346–7,531 bp · +
psbI · NC_067671.1 · 7,920–8,030 bp · +
trnG-UCC · NC_067671.1 · 9,035–9,795 bp · +
trnR-UCU · NC_067671.1 · 9,986–10,057 bp · +
trnC-GCA · NC_067671.1 · 28,081–28,151 bp · +
petN · NC_067671.1 · 28,314–28,403 bp · +
trnT-GGU · NC_067671.1 · 31,064–31,135 bp · +
psbD · NC_067671.1 · 32,453–33,514 bp · +
psbC · NC_067671.1 · 33,462–34,883 bp · +
psbZ · NC_067671.1 · 35,552–35,740 bp · +
trnG-GCC · NC_067671.1 · 35,985–36,055 bp · +
trnS-GGA · NC_067671.1 · 44,954–45,040 bp · +
trnL-UAA · NC_067671.1 · 47,126–47,690 bp · +
trnF-GAA · NC_067671.1 · 47,984–48,056 bp · +
trnM-CAU · NC_067671.1 · 52,194–52,266 bp · +
rbcL · NC_067671.1 · 55,159–56,592 bp · +
accD · NC_067671.1 · 57,291–58,772 bp · +
psaI · NC_067671.1 · 59,474–59,584 bp · +
ycf4 · NC_067671.1 · 60,031–60,585 bp · +
cemA · NC_067671.1 · 61,168–61,857 bp · +
petA · NC_067671.1 · 62,072–63,034 bp · +
petL · NC_067671.1 · 65,749–65,844 bp · +
petG · NC_067671.1 · 66,019–66,132 bp · +
psaJ · NC_067671.1 · 66,852–66,986 bp · +
rpl33 · NC_067671.1 · 67,447–67,647 bp · +
rps18 · NC_067671.1 · 67,814–68,119 bp · +
rps12 · NC_067671.1 · 138,473–139,265 bp · +
psbB · NC_067671.1 · 72,109–73,635 bp · +
psbT · NC_067671.1 · 73,819–73,920 bp · +
psbH · NC_067671.1 · 74,223–74,441 bp · +
petB · NC_067671.1 · 74,567–75,927 bp · +
petD · NC_067671.1 · 76,116–77,308 bp · +
ycf2 · NC_067671.1 · 85,807–92,637 bp · +
ycf15 · NC_067671.1 · 92,827–92,976 bp · +
trnV-GAC · NC_067671.1 · 99,342–99,413 bp · +
rrn16 · NC_067671.1 · 99,640–101,130 bp · +
trnI-GAU · NC_067671.1 · 101,428–102,446 bp · +
trnA-UGC · NC_067671.1 · 102,511–103,389 bp · +
rrn23 · NC_067671.1 · 103,561–106,371 bp · +
rrn4.5 · NC_067671.1 · 106,470–106,572 bp · +
rrn5 · NC_067671.1 · 106,828–106,948 bp · +
trnR-ACG · NC_067671.1 · 107,192–107,265 bp · +
ycf1 · NC_067671.1 · 108,245–109,375 bp · +
rpl32 · NC_067671.1 · 111,977–112,147 bp · +
trnL-UAG · NC_067671.1 · 112,907–112,986 bp · +
ccsA · NC_067671.1 · 113,075–114,046 bp · +
trnN-GUU · NC_067671.1 · 128,250–128,321 bp · +
rps7 · NC_067671.1 · 139,319–139,786 bp · +
ndhB · NC_067671.1 · 140,057–142,264 bp · +
trnL-CAA · NC_067671.1 · 142,836–142,916 bp · +
trnI-CAU · NC_067671.1 · 150,441–150,514 bp · +
rpl23 · NC_067671.1 · 150,680–150,961 bp · +
rpl2 · NC_067671.1 · 150,980–152,458 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Isodon megathyrsus
ANNOTATED PLASTOME
NC_067671.1
152,568 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
ATP synthase
Ribosomal protein
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38142 76284 114426 152568 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK OOC28_pgp086 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 11 85 75 Locate
psbA gene − 393 1451 1059 Locate
trnK-UUU gene − 1683 4263 2581 Locate
matK gene − 2003 3523 1521 Locate
OOC28_pgp086 gene − 4790 5935 1146 Locate
trnQ-UUG gene − 6881 6952 72 Locate
psbK gene + 7346 7531 186 Locate
psbI gene + 7920 8030 111 Locate
trnS-GCU gene − 8186 8273 88 Locate
trnG-UCC gene + 9035 9795 761 Locate
trnR-UCU gene + 9986 10057 72 Locate
atpA gene − 10161 11684 1524 Locate
atpF gene − 11793 13038 1246 Locate
atpH gene − 13330 13575 246 Locate
atpI gene − 14577 15320 744 Locate
rps2 gene − 15546 16256 711 Locate
rpoC2 gene − 16473 20654 4182 Locate
rpoC1 gene − 20819 23652 2834 Locate
rpoB gene − 23679 26891 3213 Locate
trnC-GCA gene + 28081 28151 71 Locate
petN gene + 28314 28403 90 Locate
psbM gene − 29395 29499 105 Locate
trnD-GUC gene − 30018 30091 74 Locate
trnY-GUA gene − 30202 30285 84 Locate
trnE-UUC gene − 30363 30435 73 Locate
trnT-GGU gene + 31064 31135 72 Locate
psbD gene + 32453 33514 1062 Locate
psbC gene + 33462 34883 1422 Locate
trnS-UGA gene − 35119 35211 93 Locate
psbZ gene + 35552 35740 189 Locate
trnG-GCC gene + 35985 36055 71 Locate
trnfM-CAU gene − 36243 36316 74 Locate
rps14 gene − 36462 36764 303 Locate
psaB gene − 36887 39091 2205 Locate
psaA gene − 39117 41369 2253 Locate
ycf3 gene − 42144 44090 1947 Locate
trnS-GGA gene + 44954 45040 87 Locate
rps4 gene − 45337 45942 606 Locate
trnT-UGU gene − 46367 46439 73 Locate
trnL-UAA gene + 47126 47690 565 Locate
trnF-GAA gene + 47984 48056 73 Locate
ndhJ gene − 48724 49200 477 Locate
ndhK gene − 49311 49988 678 Locate
ndhC gene − 50040 50402 363 Locate
trnV-UAC gene − 51359 52013 655 Locate
trnM-CAU gene + 52194 52266 73 Locate
atpE gene − 52473 52874 402 Locate
atpB gene − 52871 54367 1497 Locate
rbcL gene + 55159 56592 1434 Locate
accD gene + 57291 58772 1482 Locate
psaI gene + 59474 59584 111 Locate
ycf4 gene + 60031 60585 555 Locate
cemA gene + 61168 61857 690 Locate
petA gene + 62072 63034 963 Locate
psbJ gene − 64074 64196 123 Locate
psbL gene − 64331 64447 117 Locate
psbF gene − 64471 64590 120 Locate
psbE gene − 64605 64856 252 Locate
petL gene + 65749 65844 96 Locate
petG gene + 66019 66132 114 Locate
trnW-CCA gene − 66255 66328 74 Locate
trnP-UGG gene − 66497 66570 74 Locate
psaJ gene + 66852 66986 135 Locate
rpl33 gene + 67447 67647 201 Locate
rps18 gene + 67814 68119 306 Locate
rpl20 gene − 68355 68741 387 Locate
rps12 gene − 69476 69589 114 Locate
clpP gene − 69708 71636 1929 Locate
psbB gene + 72109 73635 1527 Locate
psbT gene + 73819 73920 102 Locate
psbN gene − 73986 74117 132 Locate
psbH gene + 74223 74441 219 Locate
petB gene + 74567 75927 1361 Locate
petD gene + 76116 77308 1193 Locate
rpoA gene − 77485 78492 1008 Locate
rps11 gene − 78563 78979 417 Locate
rpl36 gene − 79095 79208 114 Locate
infA gene − 79304 79537 234 Locate
rps8 gene − 79664 80068 405 Locate
rpl14 gene − 80251 80619 369 Locate
rpl16 gene − 80753 82020 1268 Locate
rps3 gene − 82164 82826 663 Locate
rpl22 gene − 82811 83284 474 Locate
rps19 gene − 83349 83627 279 Locate
rpl2 gene − 83695 85173 1479 Locate
rpl23 gene − 85192 85473 282 Locate
trnI-CAU gene − 85639 85712 74 Locate
ycf2 gene + 85807 92637 6831 Locate
ycf15 gene + 92827 92976 150 Locate
trnL-CAA gene − 93237 93317 81 Locate
ndhB gene − 93889 96096 2208 Locate
rps7 gene − 96367 96834 468 Locate
rps12 gene − 96888 97680 793 Locate
trnV-GAC gene + 99342 99413 72 Locate
rrn16 gene + 99640 101130 1491 Locate
trnI-GAU gene + 101428 102446 1019 Locate
trnA-UGC gene + 102511 103389 879 Locate
rrn23 gene + 103561 106371 2811 Locate
rrn4.5 gene + 106470 106572 103 Locate
rrn5 gene + 106828 106948 121 Locate
trnR-ACG gene + 107192 107265 74 Locate
trnN-GUU gene − 107832 107903 72 Locate
ycf1 gene + 108245 109375 1131 Locate
ndhF gene − 109269 111500 2232 Locate
rpl32 gene + 111977 112147 171 Locate
trnL-UAG gene + 112907 112986 80 Locate
ccsA gene + 113075 114046 972 Locate
ndhD gene − 114278 115807 1530 Locate
psaC gene − 115898 116143 246 Locate
ndhE gene − 116399 116704 306 Locate
ndhG gene − 116919 117449 531 Locate
ndhI gene − 117809 118315 507 Locate
ndhA gene − 118396 120519 2124 Locate
ndhH gene − 120521 121702 1182 Locate
rps15 gene − 121817 122089 273 Locate
ycf1 gene − 122386 127908 5523 Locate
trnN-GUU gene + 128250 128321 72 Locate
trnR-ACG gene − 128888 128961 74 Locate
rrn5 gene − 129205 129325 121 Locate
rrn4.5 gene − 129581 129683 103 Locate
rrn23 gene − 129782 132592 2811 Locate
trnA-UGC gene − 132764 133642 879 Locate
trnI-GAU gene − 133707 134725 1019 Locate
rrn16 gene − 135023 136513 1491 Locate
trnV-GAC gene − 136740 136811 72 Locate
rps12 gene + 138473 139265 793 Locate
rps7 gene + 139319 139786 468 Locate
ndhB gene + 140057 142264 2208 Locate
trnL-CAA gene + 142836 142916 81 Locate
ycf15 gene − 143177 143326 150 Locate
ycf2 gene − 143516 150346 6831 Locate
trnI-CAU gene + 150441 150514 74 Locate
rpl23 gene + 150680 150961 282 Locate
rpl2 gene + 150980 152458 1479 Locate
Status Available
Accession NC_067671.1
Length 152,568 bp
GC content 37.6%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 16 Atp Synthase 6 Ribosomal Protein 25 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources