Isodon mucronatus chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · NC_067704.1 · 11–85 bp · −
psbA · NC_067704.1 · 393–1,451 bp · −
trnK-UUU · NC_067704.1 · 1,683–4,263 bp · −
matK · NC_067704.1 · 2,003–3,523 bp · −
OOA40_pgp086 · NC_067704.1 · 4,789–5,934 bp · −
trnQ-UUG · NC_067704.1 · 6,880–6,951 bp · −
trnS-GCU · NC_067704.1 · 8,188–8,275 bp · −
atpA · NC_067704.1 · 10,162–11,685 bp · −
atpF · NC_067704.1 · 11,796–13,040 bp · −
atpH · NC_067704.1 · 13,332–13,577 bp · −
atpI · NC_067704.1 · 14,578–15,321 bp · −
rps2 · NC_067704.1 · 15,546–16,256 bp · −
rpoC2 · NC_067704.1 · 16,472–20,653 bp · −
rpoC1 · NC_067704.1 · 20,818–23,651 bp · −
rpoB · NC_067704.1 · 23,678–26,890 bp · −
psbM · NC_067704.1 · 29,395–29,499 bp · −
trnD-GUC · NC_067704.1 · 30,018–30,091 bp · −
trnY-GUA · NC_067704.1 · 30,202–30,285 bp · −
trnE-UUC · NC_067704.1 · 30,363–30,435 bp · −
trnS-UGA · NC_067704.1 · 35,100–35,192 bp · −
trnfM-CAU · NC_067704.1 · 36,225–36,298 bp · −
rps14 · NC_067704.1 · 36,444–36,746 bp · −
psaB · NC_067704.1 · 36,869–39,073 bp · −
psaA · NC_067704.1 · 39,099–41,351 bp · −
ycf3 · NC_067704.1 · 42,126–44,073 bp · −
rps4 · NC_067704.1 · 45,313–45,918 bp · −
trnT-UGU · NC_067704.1 · 46,315–46,387 bp · −
ndhJ · NC_067704.1 · 48,671–49,147 bp · −
ndhK · NC_067704.1 · 49,258–49,935 bp · −
ndhC · NC_067704.1 · 49,987–50,349 bp · −
trnV-UAC · NC_067704.1 · 51,306–51,961 bp · −
atpE · NC_067704.1 · 52,415–52,816 bp · −
atpB · NC_067704.1 · 52,813–54,309 bp · −
psbJ · NC_067704.1 · 64,015–64,137 bp · −
psbL · NC_067704.1 · 64,272–64,388 bp · −
psbF · NC_067704.1 · 64,412–64,531 bp · −
psbE · NC_067704.1 · 64,546–64,797 bp · −
trnW-CCA · NC_067704.1 · 66,196–66,269 bp · −
trnP-UGG · NC_067704.1 · 66,438–66,511 bp · −
rpl20 · NC_067704.1 · 68,293–68,679 bp · −
rps12 · NC_067704.1 · 69,413–69,526 bp · −
rps12 · NC_067704.1 · 96,824–97,616 bp · −
clpP · NC_067704.1 · 69,645–71,562 bp · −
psbN · NC_067704.1 · 73,913–74,044 bp · −
rpoA · NC_067704.1 · 77,419–78,426 bp · −
rps11 · NC_067704.1 · 78,499–78,915 bp · −
rpl36 · NC_067704.1 · 79,031–79,144 bp · −
infA · NC_067704.1 · 79,240–79,473 bp · −
rps8 · NC_067704.1 · 79,600–80,004 bp · −
rpl14 · NC_067704.1 · 80,187–80,555 bp · −
rpl16 · NC_067704.1 · 80,689–81,956 bp · −
rps3 · NC_067704.1 · 82,100–82,762 bp · −
rpl22 · NC_067704.1 · 82,747–83,220 bp · −
rps19 · NC_067704.1 · 83,285–83,563 bp · −
rpl2 · NC_067704.1 · 83,631–85,109 bp · −
rpl23 · NC_067704.1 · 85,128–85,409 bp · −
trnI-CAU · NC_067704.1 · 85,575–85,648 bp · −
trnL-CAA · NC_067704.1 · 93,173–93,253 bp · −
ndhB · NC_067704.1 · 93,825–96,032 bp · −
rps7 · NC_067704.1 · 96,303–96,770 bp · −
trnN-GUU · NC_067704.1 · 107,768–107,839 bp · −
ndhF · NC_067704.1 · 109,205–111,436 bp · −
ndhD · NC_067704.1 · 114,217–115,746 bp · −
psaC · NC_067704.1 · 115,837–116,082 bp · −
ndhE · NC_067704.1 · 116,338–116,643 bp · −
ndhG · NC_067704.1 · 116,858–117,388 bp · −
ndhI · NC_067704.1 · 117,747–118,253 bp · −
ndhA · NC_067704.1 · 118,334–120,455 bp · −
ndhH · NC_067704.1 · 120,457–121,638 bp · −
rps15 · NC_067704.1 · 121,753–122,025 bp · −
ycf1 · NC_067704.1 · 122,455–127,977 bp · −
trnR-ACG · NC_067704.1 · 128,957–129,030 bp · −
rrn5 · NC_067704.1 · 129,274–129,394 bp · −
rrn4.5 · NC_067704.1 · 129,650–129,752 bp · −
rrn23 · NC_067704.1 · 129,851–132,661 bp · −
trnA-UGC · NC_067704.1 · 132,833–133,711 bp · −
trnI-GAU · NC_067704.1 · 133,776–134,794 bp · −
rrn16 · NC_067704.1 · 135,092–136,582 bp · −
trnV-GAC · NC_067704.1 · 136,809–136,880 bp · −
ycf15 · NC_067704.1 · 143,246–143,395 bp · −
ycf2 · NC_067704.1 · 143,585–150,415 bp · −
psbK · NC_067704.1 · 7,345–7,530 bp · +
psbI · NC_067704.1 · 7,918–8,028 bp · +
trnG-UCC · NC_067704.1 · 9,038–9,796 bp · +
trnR-UCU · NC_067704.1 · 9,987–10,058 bp · +
trnC-GCA · NC_067704.1 · 28,080–28,150 bp · +
petN · NC_067704.1 · 28,313–28,402 bp · +
trnT-GGU · NC_067704.1 · 31,045–31,116 bp · +
psbD · NC_067704.1 · 32,434–33,495 bp · +
psbC · NC_067704.1 · 33,443–34,864 bp · +
psbZ · NC_067704.1 · 35,533–35,721 bp · +
trnG-GCC · NC_067704.1 · 35,966–36,036 bp · +
trnS-GGA · NC_067704.1 · 44,937–45,023 bp · +
trnL-UAA · NC_067704.1 · 47,073–47,637 bp · +
trnF-GAA · NC_067704.1 · 47,931–48,003 bp · +
trnM-CAU · NC_067704.1 · 52,142–52,214 bp · +
rbcL · NC_067704.1 · 55,100–56,533 bp · +
accD · NC_067704.1 · 57,232–58,713 bp · +
psaI · NC_067704.1 · 59,415–59,525 bp · +
ycf4 · NC_067704.1 · 59,973–60,527 bp · +
cemA · NC_067704.1 · 61,111–61,800 bp · +
petA · NC_067704.1 · 62,015–62,977 bp · +
petL · NC_067704.1 · 65,690–65,785 bp · +
petG · NC_067704.1 · 65,960–66,073 bp · +
psaJ · NC_067704.1 · 66,793–66,927 bp · +
rpl33 · NC_067704.1 · 67,386–67,586 bp · +
rps18 · NC_067704.1 · 67,753–68,058 bp · +
rps12 · NC_067704.1 · 138,542–139,334 bp · +
psbB · NC_067704.1 · 72,035–73,561 bp · +
psbT · NC_067704.1 · 73,746–73,847 bp · +
psbH · NC_067704.1 · 74,150–74,368 bp · +
petB · NC_067704.1 · 74,494–75,860 bp · +
petD · NC_067704.1 · 76,049–77,242 bp · +
ycf2 · NC_067704.1 · 85,743–92,573 bp · +
ycf15 · NC_067704.1 · 92,763–92,912 bp · +
trnV-GAC · NC_067704.1 · 99,278–99,349 bp · +
rrn16 · NC_067704.1 · 99,576–101,066 bp · +
trnI-GAU · NC_067704.1 · 101,364–102,382 bp · +
trnA-UGC · NC_067704.1 · 102,447–103,325 bp · +
rrn23 · NC_067704.1 · 103,497–106,307 bp · +
rrn4.5 · NC_067704.1 · 106,406–106,508 bp · +
rrn5 · NC_067704.1 · 106,764–106,884 bp · +
trnR-ACG · NC_067704.1 · 107,128–107,201 bp · +
ycf1 · NC_067704.1 · 108,181–109,311 bp · +
rpl32 · NC_067704.1 · 111,912–112,082 bp · +
trnL-UAG · NC_067704.1 · 112,846–112,925 bp · +
ccsA · NC_067704.1 · 113,014–113,985 bp · +
trnN-GUU · NC_067704.1 · 128,319–128,390 bp · +
rps7 · NC_067704.1 · 139,388–139,855 bp · +
ndhB · NC_067704.1 · 140,126–142,333 bp · +
trnL-CAA · NC_067704.1 · 142,905–142,985 bp · +
trnI-CAU · NC_067704.1 · 150,510–150,583 bp · +
rpl23 · NC_067704.1 · 150,749–151,030 bp · +
rpl2 · NC_067704.1 · 151,049–152,527 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Isodon mucronatus
ANNOTATED PLASTOME
NC_067704.1
152,637 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
ATP synthase
Ribosomal protein
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38159 76318 114478 152637 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK OOA40_pgp086 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 11 85 75 Locate
psbA gene − 393 1451 1059 Locate
trnK-UUU gene − 1683 4263 2581 Locate
matK gene − 2003 3523 1521 Locate
OOA40_pgp086 gene − 4789 5934 1146 Locate
trnQ-UUG gene − 6880 6951 72 Locate
psbK gene + 7345 7530 186 Locate
psbI gene + 7918 8028 111 Locate
trnS-GCU gene − 8188 8275 88 Locate
trnG-UCC gene + 9038 9796 759 Locate
trnR-UCU gene + 9987 10058 72 Locate
atpA gene − 10162 11685 1524 Locate
atpF gene − 11796 13040 1245 Locate
atpH gene − 13332 13577 246 Locate
atpI gene − 14578 15321 744 Locate
rps2 gene − 15546 16256 711 Locate
rpoC2 gene − 16472 20653 4182 Locate
rpoC1 gene − 20818 23651 2834 Locate
rpoB gene − 23678 26890 3213 Locate
trnC-GCA gene + 28080 28150 71 Locate
petN gene + 28313 28402 90 Locate
psbM gene − 29395 29499 105 Locate
trnD-GUC gene − 30018 30091 74 Locate
trnY-GUA gene − 30202 30285 84 Locate
trnE-UUC gene − 30363 30435 73 Locate
trnT-GGU gene + 31045 31116 72 Locate
psbD gene + 32434 33495 1062 Locate
psbC gene + 33443 34864 1422 Locate
trnS-UGA gene − 35100 35192 93 Locate
psbZ gene + 35533 35721 189 Locate
trnG-GCC gene + 35966 36036 71 Locate
trnfM-CAU gene − 36225 36298 74 Locate
rps14 gene − 36444 36746 303 Locate
psaB gene − 36869 39073 2205 Locate
psaA gene − 39099 41351 2253 Locate
ycf3 gene − 42126 44073 1948 Locate
trnS-GGA gene + 44937 45023 87 Locate
rps4 gene − 45313 45918 606 Locate
trnT-UGU gene − 46315 46387 73 Locate
trnL-UAA gene + 47073 47637 565 Locate
trnF-GAA gene + 47931 48003 73 Locate
ndhJ gene − 48671 49147 477 Locate
ndhK gene − 49258 49935 678 Locate
ndhC gene − 49987 50349 363 Locate
trnV-UAC gene − 51306 51961 656 Locate
trnM-CAU gene + 52142 52214 73 Locate
atpE gene − 52415 52816 402 Locate
atpB gene − 52813 54309 1497 Locate
rbcL gene + 55100 56533 1434 Locate
accD gene + 57232 58713 1482 Locate
psaI gene + 59415 59525 111 Locate
ycf4 gene + 59973 60527 555 Locate
cemA gene + 61111 61800 690 Locate
petA gene + 62015 62977 963 Locate
psbJ gene − 64015 64137 123 Locate
psbL gene − 64272 64388 117 Locate
psbF gene − 64412 64531 120 Locate
psbE gene − 64546 64797 252 Locate
petL gene + 65690 65785 96 Locate
petG gene + 65960 66073 114 Locate
trnW-CCA gene − 66196 66269 74 Locate
trnP-UGG gene − 66438 66511 74 Locate
psaJ gene + 66793 66927 135 Locate
rpl33 gene + 67386 67586 201 Locate
rps18 gene + 67753 68058 306 Locate
rpl20 gene − 68293 68679 387 Locate
rps12 gene − 69413 69526 114 Locate
clpP gene − 69645 71562 1918 Locate
psbB gene + 72035 73561 1527 Locate
psbT gene + 73746 73847 102 Locate
psbN gene − 73913 74044 132 Locate
psbH gene + 74150 74368 219 Locate
petB gene + 74494 75860 1367 Locate
petD gene + 76049 77242 1194 Locate
rpoA gene − 77419 78426 1008 Locate
rps11 gene − 78499 78915 417 Locate
rpl36 gene − 79031 79144 114 Locate
infA gene − 79240 79473 234 Locate
rps8 gene − 79600 80004 405 Locate
rpl14 gene − 80187 80555 369 Locate
rpl16 gene − 80689 81956 1268 Locate
rps3 gene − 82100 82762 663 Locate
rpl22 gene − 82747 83220 474 Locate
rps19 gene − 83285 83563 279 Locate
rpl2 gene − 83631 85109 1479 Locate
rpl23 gene − 85128 85409 282 Locate
trnI-CAU gene − 85575 85648 74 Locate
ycf2 gene + 85743 92573 6831 Locate
ycf15 gene + 92763 92912 150 Locate
trnL-CAA gene − 93173 93253 81 Locate
ndhB gene − 93825 96032 2208 Locate
rps7 gene − 96303 96770 468 Locate
rps12 gene − 96824 97616 793 Locate
trnV-GAC gene + 99278 99349 72 Locate
rrn16 gene + 99576 101066 1491 Locate
trnI-GAU gene + 101364 102382 1019 Locate
trnA-UGC gene + 102447 103325 879 Locate
rrn23 gene + 103497 106307 2811 Locate
rrn4.5 gene + 106406 106508 103 Locate
rrn5 gene + 106764 106884 121 Locate
trnR-ACG gene + 107128 107201 74 Locate
trnN-GUU gene − 107768 107839 72 Locate
ycf1 gene + 108181 109311 1131 Locate
ndhF gene − 109205 111436 2232 Locate
rpl32 gene + 111912 112082 171 Locate
trnL-UAG gene + 112846 112925 80 Locate
ccsA gene + 113014 113985 972 Locate
ndhD gene − 114217 115746 1530 Locate
psaC gene − 115837 116082 246 Locate
ndhE gene − 116338 116643 306 Locate
ndhG gene − 116858 117388 531 Locate
ndhI gene − 117747 118253 507 Locate
ndhA gene − 118334 120455 2122 Locate
ndhH gene − 120457 121638 1182 Locate
rps15 gene − 121753 122025 273 Locate
ycf1 gene − 122455 127977 5523 Locate
trnN-GUU gene + 128319 128390 72 Locate
trnR-ACG gene − 128957 129030 74 Locate
rrn5 gene − 129274 129394 121 Locate
rrn4.5 gene − 129650 129752 103 Locate
rrn23 gene − 129851 132661 2811 Locate
trnA-UGC gene − 132833 133711 879 Locate
trnI-GAU gene − 133776 134794 1019 Locate
rrn16 gene − 135092 136582 1491 Locate
trnV-GAC gene − 136809 136880 72 Locate
rps12 gene + 138542 139334 793 Locate
rps7 gene + 139388 139855 468 Locate
ndhB gene + 140126 142333 2208 Locate
trnL-CAA gene + 142905 142985 81 Locate
ycf15 gene − 143246 143395 150 Locate
ycf2 gene − 143585 150415 6831 Locate
trnI-CAU gene + 150510 150583 74 Locate
rpl23 gene + 150749 151030 282 Locate
rpl2 gene + 151049 152527 1479 Locate
Status Available
Accession NC_067704.1
Length 152,637 bp
GC content 37.6%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 16 Atp Synthase 6 Ribosomal Protein 25 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources