Isodon oreophilus chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · NC_067672.1 · 11–85 bp · −
psbA · NC_067672.1 · 338–1,396 bp · −
trnK-UUU · NC_067672.1 · 1,628–4,207 bp · −
matK · NC_067672.1 · 1,948–3,468 bp · −
ON849_pgp086 · NC_067672.1 · 4,746–5,887 bp · −
trnQ-UUG · NC_067672.1 · 6,733–6,804 bp · −
trnS-GCU · NC_067672.1 · 8,039–8,126 bp · −
atpA · NC_067672.1 · 9,919–11,442 bp · −
atpF · NC_067672.1 · 11,543–12,791 bp · −
atpH · NC_067672.1 · 13,083–13,328 bp · −
atpI · NC_067672.1 · 14,273–15,016 bp · −
rps2 · NC_067672.1 · 15,242–15,952 bp · −
rpoC2 · NC_067672.1 · 16,166–20,353 bp · −
rpoC1 · NC_067672.1 · 20,518–23,351 bp · −
rpoB · NC_067672.1 · 23,378–26,590 bp · −
psbM · NC_067672.1 · 29,097–29,201 bp · −
trnD-GUC · NC_067672.1 · 29,720–29,793 bp · −
trnY-GUA · NC_067672.1 · 29,904–29,987 bp · −
trnE-UUC · NC_067672.1 · 30,065–30,137 bp · −
trnS-UGA · NC_067672.1 · 34,823–34,915 bp · −
trnfM-CAU · NC_067672.1 · 35,925–35,998 bp · −
rps14 · NC_067672.1 · 36,143–36,445 bp · −
psaB · NC_067672.1 · 36,568–38,772 bp · −
psaA · NC_067672.1 · 38,798–41,050 bp · −
ycf3 · NC_067672.1 · 41,850–43,810 bp · −
rps4 · NC_067672.1 · 45,039–45,644 bp · −
trnT-UGU · NC_067672.1 · 46,057–46,129 bp · −
ndhJ · NC_067672.1 · 48,417–48,893 bp · −
ndhK · NC_067672.1 · 49,004–49,681 bp · −
ndhC · NC_067672.1 · 49,733–50,095 bp · −
trnV-UAC · NC_067672.1 · 51,051–51,708 bp · −
atpE · NC_067672.1 · 52,167–52,568 bp · −
atpB · NC_067672.1 · 52,565–54,061 bp · −
psbJ · NC_067672.1 · 63,734–63,856 bp · −
psbL · NC_067672.1 · 63,991–64,107 bp · −
psbF · NC_067672.1 · 64,131–64,250 bp · −
psbE · NC_067672.1 · 64,265–64,516 bp · −
trnW-CCA · NC_067672.1 · 65,916–65,989 bp · −
trnP-UGG · NC_067672.1 · 66,159–66,232 bp · −
rpl20 · NC_067672.1 · 68,005–68,391 bp · −
rps12 · NC_067672.1 · 69,123–69,236 bp · −
rps12 · NC_067672.1 · 96,501–97,284 bp · −
clpP · NC_067672.1 · 69,355–71,280 bp · −
psbN · NC_067672.1 · 73,631–73,762 bp · −
rpoA · NC_067672.1 · 77,136–78,143 bp · −
rps11 · NC_067672.1 · 78,215–78,631 bp · −
rpl36 · NC_067672.1 · 78,741–78,854 bp · −
infA · NC_067672.1 · 78,950–79,183 bp · −
rps8 · NC_067672.1 · 79,309–79,713 bp · −
rpl14 · NC_067672.1 · 79,885–80,253 bp · −
rpl16 · NC_067672.1 · 80,391–81,659 bp · −
rps3 · NC_067672.1 · 81,812–82,474 bp · −
rpl22 · NC_067672.1 · 82,459–82,932 bp · −
rps19 · NC_067672.1 · 82,997–83,275 bp · −
rpl2 · NC_067672.1 · 83,344–84,822 bp · −
rpl23 · NC_067672.1 · 84,841–85,122 bp · −
trnI-CAU · NC_067672.1 · 85,288–85,361 bp · −
trnL-CAA · NC_067672.1 · 92,859–92,939 bp · −
ndhB · NC_067672.1 · 93,502–95,709 bp · −
rps7 · NC_067672.1 · 95,980–96,447 bp · −
trnN-GUU · NC_067672.1 · 107,427–107,498 bp · −
ndhF · NC_067672.1 · 108,863–111,094 bp · −
ndhD · NC_067672.1 · 113,876–115,405 bp · −
psaC · NC_067672.1 · 115,496–115,741 bp · −
ndhE · NC_067672.1 · 115,997–116,302 bp · −
ndhG · NC_067672.1 · 116,517–117,047 bp · −
ndhI · NC_067672.1 · 117,416–117,922 bp · −
ndhA · NC_067672.1 · 118,003–120,112 bp · −
ndhH · NC_067672.1 · 120,114–121,295 bp · −
rps15 · NC_067672.1 · 121,410–121,673 bp · −
ycf1 · NC_067672.1 · 122,113–127,668 bp · −
trnR-ACG · NC_067672.1 · 128,653–128,726 bp · −
rrn5 · NC_067672.1 · 128,970–129,090 bp · −
rrn4.5 · NC_067672.1 · 129,346–129,448 bp · −
rrn23 · NC_067672.1 · 129,547–132,357 bp · −
trnA-UGC · NC_067672.1 · 132,521–133,399 bp · −
trnI-GAU · NC_067672.1 · 133,464–134,482 bp · −
rrn16 · NC_067672.1 · 134,780–136,270 bp · −
trnV-GAC · NC_067672.1 · 136,497–136,568 bp · −
ycf15 · NC_067672.1 · 142,909–143,058 bp · −
ycf2 · NC_067672.1 · 143,248–150,051 bp · −
psbK · NC_067672.1 · 7,199–7,384 bp · +
psbI · NC_067672.1 · 7,774–7,884 bp · +
trnG-UCC · NC_067672.1 · 8,794–9,553 bp · +
trnR-UCU · NC_067672.1 · 9,743–9,814 bp · +
trnC-GCA · NC_067672.1 · 27,782–27,852 bp · +
petN · NC_067672.1 · 28,015–28,104 bp · +
trnT-GGU · NC_067672.1 · 30,713–30,784 bp · +
psbD · NC_067672.1 · 32,157–33,218 bp · +
psbC · NC_067672.1 · 33,166–34,587 bp · +
psbZ · NC_067672.1 · 35,256–35,444 bp · +
trnG-GCC · NC_067672.1 · 35,682–35,752 bp · +
trnS-GGA · NC_067672.1 · 44,656–44,742 bp · +
trnL-UAA · NC_067672.1 · 46,823–47,366 bp · +
trnF-GAA · NC_067672.1 · 47,666–47,738 bp · +
trnM-CAU · NC_067672.1 · 51,889–51,961 bp · +
rbcL · NC_067672.1 · 54,860–56,305 bp · +
accD · NC_067672.1 · 56,988–58,469 bp · +
psaI · NC_067672.1 · 59,167–59,277 bp · +
ycf4 · NC_067672.1 · 59,722–60,276 bp · +
cemA · NC_067672.1 · 60,862–61,551 bp · +
petA · NC_067672.1 · 61,766–62,728 bp · +
petL · NC_067672.1 · 65,410–65,505 bp · +
petG · NC_067672.1 · 65,680–65,793 bp · +
psaJ · NC_067672.1 · 66,516–66,650 bp · +
rpl33 · NC_067672.1 · 67,098–67,298 bp · +
rps18 · NC_067672.1 · 67,465–67,770 bp · +
rps12 · NC_067672.1 · 138,223–139,006 bp · +
psbB · NC_067672.1 · 71,753–73,279 bp · +
psbT · NC_067672.1 · 73,464–73,565 bp · +
psbH · NC_067672.1 · 73,868–74,086 bp · +
petB · NC_067672.1 · 74,221–75,577 bp · +
petD · NC_067672.1 · 75,766–76,959 bp · +
ycf2 · NC_067672.1 · 85,456–92,259 bp · +
ycf15 · NC_067672.1 · 92,449–92,598 bp · +
trnV-GAC · NC_067672.1 · 98,939–99,010 bp · +
rrn16 · NC_067672.1 · 99,237–100,727 bp · +
trnI-GAU · NC_067672.1 · 101,025–102,043 bp · +
trnA-UGC · NC_067672.1 · 102,108–102,986 bp · +
rrn23 · NC_067672.1 · 103,150–105,960 bp · +
rrn4.5 · NC_067672.1 · 106,059–106,161 bp · +
rrn5 · NC_067672.1 · 106,417–106,537 bp · +
trnR-ACG · NC_067672.1 · 106,781–106,854 bp · +
ycf1 · NC_067672.1 · 107,839–108,969 bp · +
rpl32 · NC_067672.1 · 111,579–111,749 bp · +
trnL-UAG · NC_067672.1 · 112,507–112,586 bp · +
ccsA · NC_067672.1 · 112,674–113,645 bp · +
trnN-GUU · NC_067672.1 · 128,009–128,080 bp · +
rps7 · NC_067672.1 · 139,060–139,527 bp · +
ndhB · NC_067672.1 · 139,798–142,005 bp · +
trnL-CAA · NC_067672.1 · 142,568–142,653 bp · +
trnI-CAU · NC_067672.1 · 150,146–150,219 bp · +
rpl23 · NC_067672.1 · 150,385–150,666 bp · +
rpl2 · NC_067672.1 · 150,685–152,163 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Isodon oreophilus
ANNOTATED PLASTOME
NC_067672.1
152,274 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
ATP synthase
Ribosomal protein
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38068 76137 114206 152274 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK ON849_pgp086 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 11 85 75 Locate
psbA gene − 338 1396 1059 Locate
trnK-UUU gene − 1628 4207 2580 Locate
matK gene − 1948 3468 1521 Locate
ON849_pgp086 gene − 4746 5887 1142 Locate
trnQ-UUG gene − 6733 6804 72 Locate
psbK gene + 7199 7384 186 Locate
psbI gene + 7774 7884 111 Locate
trnS-GCU gene − 8039 8126 88 Locate
trnG-UCC gene + 8794 9553 760 Locate
trnR-UCU gene + 9743 9814 72 Locate
atpA gene − 9919 11442 1524 Locate
atpF gene − 11543 12791 1249 Locate
atpH gene − 13083 13328 246 Locate
atpI gene − 14273 15016 744 Locate
rps2 gene − 15242 15952 711 Locate
rpoC2 gene − 16166 20353 4188 Locate
rpoC1 gene − 20518 23351 2834 Locate
rpoB gene − 23378 26590 3213 Locate
trnC-GCA gene + 27782 27852 71 Locate
petN gene + 28015 28104 90 Locate
psbM gene − 29097 29201 105 Locate
trnD-GUC gene − 29720 29793 74 Locate
trnY-GUA gene − 29904 29987 84 Locate
trnE-UUC gene − 30065 30137 73 Locate
trnT-GGU gene + 30713 30784 72 Locate
psbD gene + 32157 33218 1062 Locate
psbC gene + 33166 34587 1422 Locate
trnS-UGA gene − 34823 34915 93 Locate
psbZ gene + 35256 35444 189 Locate
trnG-GCC gene + 35682 35752 71 Locate
trnfM-CAU gene − 35925 35998 74 Locate
rps14 gene − 36143 36445 303 Locate
psaB gene − 36568 38772 2205 Locate
psaA gene − 38798 41050 2253 Locate
ycf3 gene − 41850 43810 1961 Locate
trnS-GGA gene + 44656 44742 87 Locate
rps4 gene − 45039 45644 606 Locate
trnT-UGU gene − 46057 46129 73 Locate
trnL-UAA gene + 46823 47366 544 Locate
trnF-GAA gene + 47666 47738 73 Locate
ndhJ gene − 48417 48893 477 Locate
ndhK gene − 49004 49681 678 Locate
ndhC gene − 49733 50095 363 Locate
trnV-UAC gene − 51051 51708 658 Locate
trnM-CAU gene + 51889 51961 73 Locate
atpE gene − 52167 52568 402 Locate
atpB gene − 52565 54061 1497 Locate
rbcL gene + 54860 56305 1446 Locate
accD gene + 56988 58469 1482 Locate
psaI gene + 59167 59277 111 Locate
ycf4 gene + 59722 60276 555 Locate
cemA gene + 60862 61551 690 Locate
petA gene + 61766 62728 963 Locate
psbJ gene − 63734 63856 123 Locate
psbL gene − 63991 64107 117 Locate
psbF gene − 64131 64250 120 Locate
psbE gene − 64265 64516 252 Locate
petL gene + 65410 65505 96 Locate
petG gene + 65680 65793 114 Locate
trnW-CCA gene − 65916 65989 74 Locate
trnP-UGG gene − 66159 66232 74 Locate
psaJ gene + 66516 66650 135 Locate
rpl33 gene + 67098 67298 201 Locate
rps18 gene + 67465 67770 306 Locate
rpl20 gene − 68005 68391 387 Locate
rps12 gene − 69123 69236 114 Locate
clpP gene − 69355 71280 1926 Locate
psbB gene + 71753 73279 1527 Locate
psbT gene + 73464 73565 102 Locate
psbN gene − 73631 73762 132 Locate
psbH gene + 73868 74086 219 Locate
petB gene + 74221 75577 1357 Locate
petD gene + 75766 76959 1194 Locate
rpoA gene − 77136 78143 1008 Locate
rps11 gene − 78215 78631 417 Locate
rpl36 gene − 78741 78854 114 Locate
infA gene − 78950 79183 234 Locate
rps8 gene − 79309 79713 405 Locate
rpl14 gene − 79885 80253 369 Locate
rpl16 gene − 80391 81659 1269 Locate
rps3 gene − 81812 82474 663 Locate
rpl22 gene − 82459 82932 474 Locate
rps19 gene − 82997 83275 279 Locate
rpl2 gene − 83344 84822 1479 Locate
rpl23 gene − 84841 85122 282 Locate
trnI-CAU gene − 85288 85361 74 Locate
ycf2 gene + 85456 92259 6804 Locate
ycf15 gene + 92449 92598 150 Locate
trnL-CAA gene − 92859 92939 81 Locate
ndhB gene − 93502 95709 2208 Locate
rps7 gene − 95980 96447 468 Locate
rps12 gene − 96501 97284 784 Locate
trnV-GAC gene + 98939 99010 72 Locate
rrn16 gene + 99237 100727 1491 Locate
trnI-GAU gene + 101025 102043 1019 Locate
trnA-UGC gene + 102108 102986 879 Locate
rrn23 gene + 103150 105960 2811 Locate
rrn4.5 gene + 106059 106161 103 Locate
rrn5 gene + 106417 106537 121 Locate
trnR-ACG gene + 106781 106854 74 Locate
trnN-GUU gene − 107427 107498 72 Locate
ycf1 gene + 107839 108969 1131 Locate
ndhF gene − 108863 111094 2232 Locate
rpl32 gene + 111579 111749 171 Locate
trnL-UAG gene + 112507 112586 80 Locate
ccsA gene + 112674 113645 972 Locate
ndhD gene − 113876 115405 1530 Locate
psaC gene − 115496 115741 246 Locate
ndhE gene − 115997 116302 306 Locate
ndhG gene − 116517 117047 531 Locate
ndhI gene − 117416 117922 507 Locate
ndhA gene − 118003 120112 2110 Locate
ndhH gene − 120114 121295 1182 Locate
rps15 gene − 121410 121673 264 Locate
ycf1 gene − 122113 127668 5556 Locate
trnN-GUU gene + 128009 128080 72 Locate
trnR-ACG gene − 128653 128726 74 Locate
rrn5 gene − 128970 129090 121 Locate
rrn4.5 gene − 129346 129448 103 Locate
rrn23 gene − 129547 132357 2811 Locate
trnA-UGC gene − 132521 133399 879 Locate
trnI-GAU gene − 133464 134482 1019 Locate
rrn16 gene − 134780 136270 1491 Locate
trnV-GAC gene − 136497 136568 72 Locate
rps12 gene + 138223 139006 784 Locate
rps7 gene + 139060 139527 468 Locate
ndhB gene + 139798 142005 2208 Locate
trnL-CAA gene + 142568 142653 86 Locate
ycf15 gene − 142909 143058 150 Locate
ycf2 gene − 143248 150051 6804 Locate
trnI-CAU gene + 150146 150219 74 Locate
rpl23 gene + 150385 150666 282 Locate
rpl2 gene + 150685 152163 1479 Locate
Status Available
Accession NC_067672.1
Length 152,274 bp
GC content 37.6%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 16 Atp Synthase 6 Ribosomal Protein 25 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources