Isodon parvifolius chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · NC_067674.1 · 11–85 bp · −
psbA · NC_067674.1 · 393–1,451 bp · −
trnK-UUU · NC_067674.1 · 1,683–4,263 bp · −
matK · NC_067674.1 · 2,003–3,523 bp · −
ON847_pgp086 · NC_067674.1 · 4,790–5,935 bp · −
trnQ-UUG · NC_067674.1 · 6,881–6,952 bp · −
trnS-GCU · NC_067674.1 · 8,184–8,271 bp · −
atpA · NC_067674.1 · 10,158–11,681 bp · −
atpF · NC_067674.1 · 11,785–13,030 bp · −
atpH · NC_067674.1 · 13,322–13,567 bp · −
atpI · NC_067674.1 · 14,569–15,312 bp · −
rps2 · NC_067674.1 · 15,539–16,249 bp · −
rpoC2 · NC_067674.1 · 16,465–20,646 bp · −
rpoC1 · NC_067674.1 · 20,811–23,644 bp · −
rpoB · NC_067674.1 · 23,671–26,883 bp · −
psbM · NC_067674.1 · 29,387–29,491 bp · −
trnD-GUC · NC_067674.1 · 30,010–30,083 bp · −
trnY-GUA · NC_067674.1 · 30,189–30,272 bp · −
trnE-UUC · NC_067674.1 · 30,350–30,422 bp · −
trnS-UGA · NC_067674.1 · 35,102–35,194 bp · −
trnfM-CAU · NC_067674.1 · 36,229–36,302 bp · −
rps14 · NC_067674.1 · 36,448–36,750 bp · −
psaB · NC_067674.1 · 36,873–39,077 bp · −
psaA · NC_067674.1 · 39,103–41,355 bp · −
ycf3 · NC_067674.1 · 42,124–44,071 bp · −
rps4 · NC_067674.1 · 45,317–45,922 bp · −
trnT-UGU · NC_067674.1 · 46,354–46,426 bp · −
ndhJ · NC_067674.1 · 48,711–49,187 bp · −
ndhK · NC_067674.1 · 49,298–49,975 bp · −
ndhC · NC_067674.1 · 50,027–50,389 bp · −
trnV-UAC · NC_067674.1 · 51,346–52,002 bp · −
atpE · NC_067674.1 · 52,456–52,857 bp · −
atpB · NC_067674.1 · 52,854–54,350 bp · −
psbJ · NC_067674.1 · 64,100–64,222 bp · −
psbL · NC_067674.1 · 64,357–64,473 bp · −
psbF · NC_067674.1 · 64,497–64,616 bp · −
psbE · NC_067674.1 · 64,631–64,882 bp · −
trnW-CCA · NC_067674.1 · 66,281–66,354 bp · −
trnP-UGG · NC_067674.1 · 66,523–66,596 bp · −
rpl20 · NC_067674.1 · 68,406–68,768 bp · −
rps12 · NC_067674.1 · 69,501–69,614 bp · −
rps12 · NC_067674.1 · 96,908–97,700 bp · −
clpP · NC_067674.1 · 69,733–71,648 bp · −
psbN · NC_067674.1 · 73,999–74,130 bp · −
rpoA · NC_067674.1 · 77,504–78,511 bp · −
rps11 · NC_067674.1 · 78,583–78,999 bp · −
rpl36 · NC_067674.1 · 79,115–79,228 bp · −
infA · NC_067674.1 · 79,324–79,557 bp · −
rps8 · NC_067674.1 · 79,684–80,088 bp · −
rpl14 · NC_067674.1 · 80,271–80,639 bp · −
rpl16 · NC_067674.1 · 80,773–82,040 bp · −
rps3 · NC_067674.1 · 82,184–82,846 bp · −
rpl22 · NC_067674.1 · 82,831–83,304 bp · −
rps19 · NC_067674.1 · 83,369–83,647 bp · −
rpl2 · NC_067674.1 · 83,715–85,193 bp · −
rpl23 · NC_067674.1 · 85,212–85,493 bp · −
trnI-CAU · NC_067674.1 · 85,659–85,732 bp · −
trnL-CAA · NC_067674.1 · 93,257–93,337 bp · −
ndhB · NC_067674.1 · 93,909–96,116 bp · −
rps7 · NC_067674.1 · 96,387–96,854 bp · −
trnN-GUU · NC_067674.1 · 107,852–107,923 bp · −
ndhF · NC_067674.1 · 109,289–111,520 bp · −
ndhD · NC_067674.1 · 114,289–115,818 bp · −
psaC · NC_067674.1 · 115,909–116,154 bp · −
ndhE · NC_067674.1 · 116,410–116,715 bp · −
ndhG · NC_067674.1 · 116,930–117,460 bp · −
ndhI · NC_067674.1 · 117,821–118,327 bp · −
ndhA · NC_067674.1 · 118,408–120,531 bp · −
ndhH · NC_067674.1 · 120,533–121,714 bp · −
rps15 · NC_067674.1 · 121,829–122,101 bp · −
ycf1 · NC_067674.1 · 122,531–128,053 bp · −
trnR-ACG · NC_067674.1 · 129,033–129,106 bp · −
rrn5 · NC_067674.1 · 129,350–129,470 bp · −
rrn4.5 · NC_067674.1 · 129,726–129,828 bp · −
rrn23 · NC_067674.1 · 129,927–132,737 bp · −
trnA-UGC · NC_067674.1 · 132,909–133,787 bp · −
trnI-GAU · NC_067674.1 · 133,852–134,870 bp · −
rrn16 · NC_067674.1 · 135,168–136,658 bp · −
trnV-GAC · NC_067674.1 · 136,885–136,956 bp · −
ycf15 · NC_067674.1 · 143,322–143,471 bp · −
ycf2 · NC_067674.1 · 143,661–150,491 bp · −
psbK · NC_067674.1 · 7,346–7,531 bp · +
psbI · NC_067674.1 · 7,919–8,029 bp · +
trnG-UCC · NC_067674.1 · 9,033–9,792 bp · +
trnR-UCU · NC_067674.1 · 9,983–10,054 bp · +
trnC-GCA · NC_067674.1 · 28,074–28,144 bp · +
petN · NC_067674.1 · 28,307–28,396 bp · +
trnT-GGU · NC_067674.1 · 31,046–31,117 bp · +
psbD · NC_067674.1 · 32,435–33,496 bp · +
psbC · NC_067674.1 · 33,444–34,865 bp · +
psbZ · NC_067674.1 · 35,535–35,723 bp · +
trnG-GCC · NC_067674.1 · 35,968–36,038 bp · +
trnS-GGA · NC_067674.1 · 44,934–45,020 bp · +
trnL-UAA · NC_067674.1 · 47,112–47,677 bp · +
trnF-GAA · NC_067674.1 · 47,971–48,043 bp · +
trnM-CAU · NC_067674.1 · 52,183–52,255 bp · +
rbcL · NC_067674.1 · 55,163–56,596 bp · +
accD · NC_067674.1 · 57,306–58,787 bp · +
psaI · NC_067674.1 · 59,494–59,604 bp · +
ycf4 · NC_067674.1 · 60,051–60,605 bp · +
cemA · NC_067674.1 · 61,195–61,884 bp · +
petA · NC_067674.1 · 62,099–63,061 bp · +
petL · NC_067674.1 · 65,775–65,870 bp · +
petG · NC_067674.1 · 66,045–66,158 bp · +
psaJ · NC_067674.1 · 66,878–67,012 bp · +
rpl33 · NC_067674.1 · 67,473–67,673 bp · +
rps18 · NC_067674.1 · 67,840–68,145 bp · +
rps12 · NC_067674.1 · 138,618–139,410 bp · +
psbB · NC_067674.1 · 72,121–73,647 bp · +
psbT · NC_067674.1 · 73,832–73,933 bp · +
psbH · NC_067674.1 · 74,236–74,454 bp · +
petB · NC_067674.1 · 74,580–75,946 bp · +
petD · NC_067674.1 · 76,135–77,327 bp · +
ycf2 · NC_067674.1 · 85,827–92,657 bp · +
ycf15 · NC_067674.1 · 92,847–92,996 bp · +
trnV-GAC · NC_067674.1 · 99,362–99,433 bp · +
rrn16 · NC_067674.1 · 99,660–101,150 bp · +
trnI-GAU · NC_067674.1 · 101,448–102,466 bp · +
trnA-UGC · NC_067674.1 · 102,531–103,409 bp · +
rrn23 · NC_067674.1 · 103,581–106,391 bp · +
rrn4.5 · NC_067674.1 · 106,490–106,592 bp · +
rrn5 · NC_067674.1 · 106,848–106,968 bp · +
trnR-ACG · NC_067674.1 · 107,212–107,285 bp · +
ycf1 · NC_067674.1 · 108,265–109,395 bp · +
rpl32 · NC_067674.1 · 111,989–112,159 bp · +
trnL-UAG · NC_067674.1 · 112,918–112,997 bp · +
ccsA · NC_067674.1 · 113,086–114,057 bp · +
trnN-GUU · NC_067674.1 · 128,395–128,466 bp · +
rps7 · NC_067674.1 · 139,464–139,931 bp · +
ndhB · NC_067674.1 · 140,202–142,409 bp · +
trnL-CAA · NC_067674.1 · 142,981–143,061 bp · +
trnI-CAU · NC_067674.1 · 150,586–150,659 bp · +
rpl23 · NC_067674.1 · 150,825–151,106 bp · +
rpl2 · NC_067674.1 · 151,125–152,603 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Isodon parvifolius
ANNOTATED PLASTOME
NC_067674.1
152,713 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
ATP synthase
Ribosomal protein
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38178 76356 114535 152713 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK ON847_pgp086 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 11 85 75 Locate
psbA gene − 393 1451 1059 Locate
trnK-UUU gene − 1683 4263 2581 Locate
matK gene − 2003 3523 1521 Locate
ON847_pgp086 gene − 4790 5935 1146 Locate
trnQ-UUG gene − 6881 6952 72 Locate
psbK gene + 7346 7531 186 Locate
psbI gene + 7919 8029 111 Locate
trnS-GCU gene − 8184 8271 88 Locate
trnG-UCC gene + 9033 9792 760 Locate
trnR-UCU gene + 9983 10054 72 Locate
atpA gene − 10158 11681 1524 Locate
atpF gene − 11785 13030 1246 Locate
atpH gene − 13322 13567 246 Locate
atpI gene − 14569 15312 744 Locate
rps2 gene − 15539 16249 711 Locate
rpoC2 gene − 16465 20646 4182 Locate
rpoC1 gene − 20811 23644 2834 Locate
rpoB gene − 23671 26883 3213 Locate
trnC-GCA gene + 28074 28144 71 Locate
petN gene + 28307 28396 90 Locate
psbM gene − 29387 29491 105 Locate
trnD-GUC gene − 30010 30083 74 Locate
trnY-GUA gene − 30189 30272 84 Locate
trnE-UUC gene − 30350 30422 73 Locate
trnT-GGU gene + 31046 31117 72 Locate
psbD gene + 32435 33496 1062 Locate
psbC gene + 33444 34865 1422 Locate
trnS-UGA gene − 35102 35194 93 Locate
psbZ gene + 35535 35723 189 Locate
trnG-GCC gene + 35968 36038 71 Locate
trnfM-CAU gene − 36229 36302 74 Locate
rps14 gene − 36448 36750 303 Locate
psaB gene − 36873 39077 2205 Locate
psaA gene − 39103 41355 2253 Locate
ycf3 gene − 42124 44071 1948 Locate
trnS-GGA gene + 44934 45020 87 Locate
rps4 gene − 45317 45922 606 Locate
trnT-UGU gene − 46354 46426 73 Locate
trnL-UAA gene + 47112 47677 566 Locate
trnF-GAA gene + 47971 48043 73 Locate
ndhJ gene − 48711 49187 477 Locate
ndhK gene − 49298 49975 678 Locate
ndhC gene − 50027 50389 363 Locate
trnV-UAC gene − 51346 52002 657 Locate
trnM-CAU gene + 52183 52255 73 Locate
atpE gene − 52456 52857 402 Locate
atpB gene − 52854 54350 1497 Locate
rbcL gene + 55163 56596 1434 Locate
accD gene + 57306 58787 1482 Locate
psaI gene + 59494 59604 111 Locate
ycf4 gene + 60051 60605 555 Locate
cemA gene + 61195 61884 690 Locate
petA gene + 62099 63061 963 Locate
psbJ gene − 64100 64222 123 Locate
psbL gene − 64357 64473 117 Locate
psbF gene − 64497 64616 120 Locate
psbE gene − 64631 64882 252 Locate
petL gene + 65775 65870 96 Locate
petG gene + 66045 66158 114 Locate
trnW-CCA gene − 66281 66354 74 Locate
trnP-UGG gene − 66523 66596 74 Locate
psaJ gene + 66878 67012 135 Locate
rpl33 gene + 67473 67673 201 Locate
rps18 gene + 67840 68145 306 Locate
rpl20 gene − 68406 68768 363 Locate
rps12 gene − 69501 69614 114 Locate
clpP gene − 69733 71648 1916 Locate
psbB gene + 72121 73647 1527 Locate
psbT gene + 73832 73933 102 Locate
psbN gene − 73999 74130 132 Locate
psbH gene + 74236 74454 219 Locate
petB gene + 74580 75946 1367 Locate
petD gene + 76135 77327 1193 Locate
rpoA gene − 77504 78511 1008 Locate
rps11 gene − 78583 78999 417 Locate
rpl36 gene − 79115 79228 114 Locate
infA gene − 79324 79557 234 Locate
rps8 gene − 79684 80088 405 Locate
rpl14 gene − 80271 80639 369 Locate
rpl16 gene − 80773 82040 1268 Locate
rps3 gene − 82184 82846 663 Locate
rpl22 gene − 82831 83304 474 Locate
rps19 gene − 83369 83647 279 Locate
rpl2 gene − 83715 85193 1479 Locate
rpl23 gene − 85212 85493 282 Locate
trnI-CAU gene − 85659 85732 74 Locate
ycf2 gene + 85827 92657 6831 Locate
ycf15 gene + 92847 92996 150 Locate
trnL-CAA gene − 93257 93337 81 Locate
ndhB gene − 93909 96116 2208 Locate
rps7 gene − 96387 96854 468 Locate
rps12 gene − 96908 97700 793 Locate
trnV-GAC gene + 99362 99433 72 Locate
rrn16 gene + 99660 101150 1491 Locate
trnI-GAU gene + 101448 102466 1019 Locate
trnA-UGC gene + 102531 103409 879 Locate
rrn23 gene + 103581 106391 2811 Locate
rrn4.5 gene + 106490 106592 103 Locate
rrn5 gene + 106848 106968 121 Locate
trnR-ACG gene + 107212 107285 74 Locate
trnN-GUU gene − 107852 107923 72 Locate
ycf1 gene + 108265 109395 1131 Locate
ndhF gene − 109289 111520 2232 Locate
rpl32 gene + 111989 112159 171 Locate
trnL-UAG gene + 112918 112997 80 Locate
ccsA gene + 113086 114057 972 Locate
ndhD gene − 114289 115818 1530 Locate
psaC gene − 115909 116154 246 Locate
ndhE gene − 116410 116715 306 Locate
ndhG gene − 116930 117460 531 Locate
ndhI gene − 117821 118327 507 Locate
ndhA gene − 118408 120531 2124 Locate
ndhH gene − 120533 121714 1182 Locate
rps15 gene − 121829 122101 273 Locate
ycf1 gene − 122531 128053 5523 Locate
trnN-GUU gene + 128395 128466 72 Locate
trnR-ACG gene − 129033 129106 74 Locate
rrn5 gene − 129350 129470 121 Locate
rrn4.5 gene − 129726 129828 103 Locate
rrn23 gene − 129927 132737 2811 Locate
trnA-UGC gene − 132909 133787 879 Locate
trnI-GAU gene − 133852 134870 1019 Locate
rrn16 gene − 135168 136658 1491 Locate
trnV-GAC gene − 136885 136956 72 Locate
rps12 gene + 138618 139410 793 Locate
rps7 gene + 139464 139931 468 Locate
ndhB gene + 140202 142409 2208 Locate
trnL-CAA gene + 142981 143061 81 Locate
ycf15 gene − 143322 143471 150 Locate
ycf2 gene − 143661 150491 6831 Locate
trnI-CAU gene + 150586 150659 74 Locate
rpl23 gene + 150825 151106 282 Locate
rpl2 gene + 151125 152603 1479 Locate
Status Available
Accession NC_067674.1
Length 152,713 bp
GC content 37.6%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 16 Atp Synthase 6 Ribosomal Protein 25 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources