Isodon pharicus chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · NC_067675.1 · 11–85 bp · −
psbA · NC_067675.1 · 393–1,451 bp · −
trnK-UUU · NC_067675.1 · 1,683–4,270 bp · −
matK · NC_067675.1 · 2,010–3,530 bp · −
ON969_pgp086 · NC_067675.1 · 4,797–5,942 bp · −
trnQ-UUG · NC_067675.1 · 6,888–6,959 bp · −
trnS-GCU · NC_067675.1 · 8,191–8,278 bp · −
atpA · NC_067675.1 · 10,165–11,688 bp · −
atpF · NC_067675.1 · 11,793–13,037 bp · −
atpH · NC_067675.1 · 13,329–13,574 bp · −
atpI · NC_067675.1 · 14,576–15,319 bp · −
rps2 · NC_067675.1 · 15,545–16,255 bp · −
rpoC2 · NC_067675.1 · 16,471–20,652 bp · −
rpoC1 · NC_067675.1 · 20,817–23,650 bp · −
rpoB · NC_067675.1 · 23,677–26,889 bp · −
psbM · NC_067675.1 · 29,392–29,496 bp · −
trnD-GUC · NC_067675.1 · 30,015–30,088 bp · −
trnY-GUA · NC_067675.1 · 30,199–30,282 bp · −
trnE-UUC · NC_067675.1 · 30,360–30,432 bp · −
trnS-UGA · NC_067675.1 · 35,099–35,191 bp · −
trnfM-CAU · NC_067675.1 · 36,226–36,299 bp · −
rps14 · NC_067675.1 · 36,445–36,747 bp · −
psaB · NC_067675.1 · 36,870–39,074 bp · −
psaA · NC_067675.1 · 39,100–41,352 bp · −
ycf3 · NC_067675.1 · 42,126–44,073 bp · −
rps4 · NC_067675.1 · 45,320–45,925 bp · −
trnT-UGU · NC_067675.1 · 46,350–46,422 bp · −
ndhJ · NC_067675.1 · 48,687–49,163 bp · −
ndhK · NC_067675.1 · 49,274–49,951 bp · −
ndhC · NC_067675.1 · 50,003–50,365 bp · −
trnV-UAC · NC_067675.1 · 51,322–51,977 bp · −
atpE · NC_067675.1 · 52,431–52,832 bp · −
atpB · NC_067675.1 · 52,829–54,325 bp · −
psbJ · NC_067675.1 · 64,085–64,207 bp · −
psbL · NC_067675.1 · 64,342–64,458 bp · −
psbF · NC_067675.1 · 64,482–64,601 bp · −
psbE · NC_067675.1 · 64,616–64,867 bp · −
trnW-CCA · NC_067675.1 · 66,266–66,339 bp · −
trnP-UGG · NC_067675.1 · 66,508–66,581 bp · −
rpl20 · NC_067675.1 · 68,365–68,751 bp · −
rps12 · NC_067675.1 · 69,484–69,597 bp · −
rps12 · NC_067675.1 · 96,895–97,687 bp · −
clpP · NC_067675.1 · 69,716–71,632 bp · −
psbN · NC_067675.1 · 73,983–74,114 bp · −
rpoA · NC_067675.1 · 77,483–78,490 bp · −
rps11 · NC_067675.1 · 78,562–78,978 bp · −
rpl36 · NC_067675.1 · 79,094–79,207 bp · −
infA · NC_067675.1 · 79,303–79,536 bp · −
rps8 · NC_067675.1 · 79,663–80,067 bp · −
rpl14 · NC_067675.1 · 80,258–80,626 bp · −
rpl16 · NC_067675.1 · 80,760–82,027 bp · −
rps3 · NC_067675.1 · 82,171–82,833 bp · −
rpl22 · NC_067675.1 · 82,818–83,291 bp · −
rps19 · NC_067675.1 · 83,356–83,634 bp · −
rpl2 · NC_067675.1 · 83,702–85,180 bp · −
rpl23 · NC_067675.1 · 85,199–85,480 bp · −
trnI-CAU · NC_067675.1 · 85,646–85,719 bp · −
trnL-CAA · NC_067675.1 · 93,244–93,324 bp · −
ndhB · NC_067675.1 · 93,896–96,103 bp · −
rps7 · NC_067675.1 · 96,374–96,841 bp · −
trnN-GUU · NC_067675.1 · 107,839–107,910 bp · −
ndhF · NC_067675.1 · 109,276–111,507 bp · −
ndhD · NC_067675.1 · 114,281–115,810 bp · −
psaC · NC_067675.1 · 115,901–116,146 bp · −
ndhE · NC_067675.1 · 116,402–116,707 bp · −
ndhG · NC_067675.1 · 116,922–117,452 bp · −
ndhI · NC_067675.1 · 117,812–118,318 bp · −
ndhA · NC_067675.1 · 118,399–120,522 bp · −
ndhH · NC_067675.1 · 120,524–121,705 bp · −
rps15 · NC_067675.1 · 121,820–122,092 bp · −
ycf1 · NC_067675.1 · 122,522–128,038 bp · −
trnR-ACG · NC_067675.1 · 129,018–129,091 bp · −
rrn5 · NC_067675.1 · 129,335–129,455 bp · −
rrn4.5 · NC_067675.1 · 129,711–129,813 bp · −
rrn23 · NC_067675.1 · 129,912–132,722 bp · −
trnA-UGC · NC_067675.1 · 132,894–133,772 bp · −
trnI-GAU · NC_067675.1 · 133,837–134,855 bp · −
rrn16 · NC_067675.1 · 135,153–136,643 bp · −
trnV-GAC · NC_067675.1 · 136,870–136,941 bp · −
ycf15 · NC_067675.1 · 143,307–143,456 bp · −
ycf2 · NC_067675.1 · 143,646–150,476 bp · −
psbK · NC_067675.1 · 7,353–7,538 bp · +
psbI · NC_067675.1 · 7,926–8,036 bp · +
trnG-UCC · NC_067675.1 · 9,040–9,799 bp · +
trnR-UCU · NC_067675.1 · 9,990–10,061 bp · +
trnC-GCA · NC_067675.1 · 28,079–28,149 bp · +
petN · NC_067675.1 · 28,312–28,401 bp · +
trnT-GGU · NC_067675.1 · 31,042–31,113 bp · +
psbD · NC_067675.1 · 32,431–33,492 bp · +
psbC · NC_067675.1 · 33,440–34,861 bp · +
psbZ · NC_067675.1 · 35,532–35,720 bp · +
trnG-GCC · NC_067675.1 · 35,965–36,035 bp · +
trnS-GGA · NC_067675.1 · 44,937–45,023 bp · +
trnL-UAA · NC_067675.1 · 47,110–47,653 bp · +
trnF-GAA · NC_067675.1 · 47,947–48,019 bp · +
trnM-CAU · NC_067675.1 · 52,158–52,230 bp · +
rbcL · NC_067675.1 · 55,159–56,592 bp · +
accD · NC_067675.1 · 57,297–58,778 bp · +
psaI · NC_067675.1 · 59,480–59,590 bp · +
ycf4 · NC_067675.1 · 60,037–60,591 bp · +
cemA · NC_067675.1 · 61,182–61,871 bp · +
petA · NC_067675.1 · 62,086–63,048 bp · +
petL · NC_067675.1 · 65,760–65,855 bp · +
petG · NC_067675.1 · 66,030–66,143 bp · +
psaJ · NC_067675.1 · 66,863–66,997 bp · +
rpl33 · NC_067675.1 · 67,458–67,658 bp · +
rps18 · NC_067675.1 · 67,825–68,130 bp · +
rps12 · NC_067675.1 · 138,603–139,395 bp · +
psbB · NC_067675.1 · 72,105–73,631 bp · +
psbT · NC_067675.1 · 73,816–73,917 bp · +
psbH · NC_067675.1 · 74,220–74,438 bp · +
petB · NC_067675.1 · 74,564–75,925 bp · +
petD · NC_067675.1 · 76,114–77,306 bp · +
ycf2 · NC_067675.1 · 85,814–92,644 bp · +
ycf15 · NC_067675.1 · 92,834–92,983 bp · +
trnV-GAC · NC_067675.1 · 99,349–99,420 bp · +
rrn16 · NC_067675.1 · 99,647–101,137 bp · +
trnI-GAU · NC_067675.1 · 101,435–102,453 bp · +
trnA-UGC · NC_067675.1 · 102,518–103,396 bp · +
rrn23 · NC_067675.1 · 103,568–106,378 bp · +
rrn4.5 · NC_067675.1 · 106,477–106,579 bp · +
rrn5 · NC_067675.1 · 106,835–106,955 bp · +
trnR-ACG · NC_067675.1 · 107,199–107,272 bp · +
ycf1 · NC_067675.1 · 108,252–109,382 bp · +
rpl32 · NC_067675.1 · 111,976–112,146 bp · +
trnL-UAG · NC_067675.1 · 112,910–112,989 bp · +
ccsA · NC_067675.1 · 113,078–114,049 bp · +
trnN-GUU · NC_067675.1 · 128,380–128,451 bp · +
rps7 · NC_067675.1 · 139,449–139,916 bp · +
ndhB · NC_067675.1 · 140,187–142,394 bp · +
trnL-CAA · NC_067675.1 · 142,966–143,046 bp · +
trnI-CAU · NC_067675.1 · 150,571–150,644 bp · +
rpl23 · NC_067675.1 · 150,810–151,091 bp · +
rpl2 · NC_067675.1 · 151,110–152,588 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Isodon pharicus
ANNOTATED PLASTOME
NC_067675.1
152,698 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
ATP synthase
Ribosomal protein
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38174 76349 114524 152698 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK ON969_pgp086 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 11 85 75 Locate
psbA gene − 393 1451 1059 Locate
trnK-UUU gene − 1683 4270 2588 Locate
matK gene − 2010 3530 1521 Locate
ON969_pgp086 gene − 4797 5942 1146 Locate
trnQ-UUG gene − 6888 6959 72 Locate
psbK gene + 7353 7538 186 Locate
psbI gene + 7926 8036 111 Locate
trnS-GCU gene − 8191 8278 88 Locate
trnG-UCC gene + 9040 9799 760 Locate
trnR-UCU gene + 9990 10061 72 Locate
atpA gene − 10165 11688 1524 Locate
atpF gene − 11793 13037 1245 Locate
atpH gene − 13329 13574 246 Locate
atpI gene − 14576 15319 744 Locate
rps2 gene − 15545 16255 711 Locate
rpoC2 gene − 16471 20652 4182 Locate
rpoC1 gene − 20817 23650 2834 Locate
rpoB gene − 23677 26889 3213 Locate
trnC-GCA gene + 28079 28149 71 Locate
petN gene + 28312 28401 90 Locate
psbM gene − 29392 29496 105 Locate
trnD-GUC gene − 30015 30088 74 Locate
trnY-GUA gene − 30199 30282 84 Locate
trnE-UUC gene − 30360 30432 73 Locate
trnT-GGU gene + 31042 31113 72 Locate
psbD gene + 32431 33492 1062 Locate
psbC gene + 33440 34861 1422 Locate
trnS-UGA gene − 35099 35191 93 Locate
psbZ gene + 35532 35720 189 Locate
trnG-GCC gene + 35965 36035 71 Locate
trnfM-CAU gene − 36226 36299 74 Locate
rps14 gene − 36445 36747 303 Locate
psaB gene − 36870 39074 2205 Locate
psaA gene − 39100 41352 2253 Locate
ycf3 gene − 42126 44073 1948 Locate
trnS-GGA gene + 44937 45023 87 Locate
rps4 gene − 45320 45925 606 Locate
trnT-UGU gene − 46350 46422 73 Locate
trnL-UAA gene + 47110 47653 544 Locate
trnF-GAA gene + 47947 48019 73 Locate
ndhJ gene − 48687 49163 477 Locate
ndhK gene − 49274 49951 678 Locate
ndhC gene − 50003 50365 363 Locate
trnV-UAC gene − 51322 51977 656 Locate
trnM-CAU gene + 52158 52230 73 Locate
atpE gene − 52431 52832 402 Locate
atpB gene − 52829 54325 1497 Locate
rbcL gene + 55159 56592 1434 Locate
accD gene + 57297 58778 1482 Locate
psaI gene + 59480 59590 111 Locate
ycf4 gene + 60037 60591 555 Locate
cemA gene + 61182 61871 690 Locate
petA gene + 62086 63048 963 Locate
psbJ gene − 64085 64207 123 Locate
psbL gene − 64342 64458 117 Locate
psbF gene − 64482 64601 120 Locate
psbE gene − 64616 64867 252 Locate
petL gene + 65760 65855 96 Locate
petG gene + 66030 66143 114 Locate
trnW-CCA gene − 66266 66339 74 Locate
trnP-UGG gene − 66508 66581 74 Locate
psaJ gene + 66863 66997 135 Locate
rpl33 gene + 67458 67658 201 Locate
rps18 gene + 67825 68130 306 Locate
rpl20 gene − 68365 68751 387 Locate
rps12 gene − 69484 69597 114 Locate
clpP gene − 69716 71632 1917 Locate
psbB gene + 72105 73631 1527 Locate
psbT gene + 73816 73917 102 Locate
psbN gene − 73983 74114 132 Locate
psbH gene + 74220 74438 219 Locate
petB gene + 74564 75925 1362 Locate
petD gene + 76114 77306 1193 Locate
rpoA gene − 77483 78490 1008 Locate
rps11 gene − 78562 78978 417 Locate
rpl36 gene − 79094 79207 114 Locate
infA gene − 79303 79536 234 Locate
rps8 gene − 79663 80067 405 Locate
rpl14 gene − 80258 80626 369 Locate
rpl16 gene − 80760 82027 1268 Locate
rps3 gene − 82171 82833 663 Locate
rpl22 gene − 82818 83291 474 Locate
rps19 gene − 83356 83634 279 Locate
rpl2 gene − 83702 85180 1479 Locate
rpl23 gene − 85199 85480 282 Locate
trnI-CAU gene − 85646 85719 74 Locate
ycf2 gene + 85814 92644 6831 Locate
ycf15 gene + 92834 92983 150 Locate
trnL-CAA gene − 93244 93324 81 Locate
ndhB gene − 93896 96103 2208 Locate
rps7 gene − 96374 96841 468 Locate
rps12 gene − 96895 97687 793 Locate
trnV-GAC gene + 99349 99420 72 Locate
rrn16 gene + 99647 101137 1491 Locate
trnI-GAU gene + 101435 102453 1019 Locate
trnA-UGC gene + 102518 103396 879 Locate
rrn23 gene + 103568 106378 2811 Locate
rrn4.5 gene + 106477 106579 103 Locate
rrn5 gene + 106835 106955 121 Locate
trnR-ACG gene + 107199 107272 74 Locate
trnN-GUU gene − 107839 107910 72 Locate
ycf1 gene + 108252 109382 1131 Locate
ndhF gene − 109276 111507 2232 Locate
rpl32 gene + 111976 112146 171 Locate
trnL-UAG gene + 112910 112989 80 Locate
ccsA gene + 113078 114049 972 Locate
ndhD gene − 114281 115810 1530 Locate
psaC gene − 115901 116146 246 Locate
ndhE gene − 116402 116707 306 Locate
ndhG gene − 116922 117452 531 Locate
ndhI gene − 117812 118318 507 Locate
ndhA gene − 118399 120522 2124 Locate
ndhH gene − 120524 121705 1182 Locate
rps15 gene − 121820 122092 273 Locate
ycf1 gene − 122522 128038 5517 Locate
trnN-GUU gene + 128380 128451 72 Locate
trnR-ACG gene − 129018 129091 74 Locate
rrn5 gene − 129335 129455 121 Locate
rrn4.5 gene − 129711 129813 103 Locate
rrn23 gene − 129912 132722 2811 Locate
trnA-UGC gene − 132894 133772 879 Locate
trnI-GAU gene − 133837 134855 1019 Locate
rrn16 gene − 135153 136643 1491 Locate
trnV-GAC gene − 136870 136941 72 Locate
rps12 gene + 138603 139395 793 Locate
rps7 gene + 139449 139916 468 Locate
ndhB gene + 140187 142394 2208 Locate
trnL-CAA gene + 142966 143046 81 Locate
ycf15 gene − 143307 143456 150 Locate
ycf2 gene − 143646 150476 6831 Locate
trnI-CAU gene + 150571 150644 74 Locate
rpl23 gene + 150810 151091 282 Locate
rpl2 gene + 151110 152588 1479 Locate
Status Available
Accession NC_067675.1
Length 152,698 bp
GC content 37.6%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 16 Atp Synthase 6 Ribosomal Protein 25 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources