Isodon phyllostachys chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · NC_067677.1 · 11–85 bp · −
psbA · NC_067677.1 · 393–1,451 bp · −
trnK-UUU · NC_067677.1 · 1,683–4,263 bp · −
matK · NC_067677.1 · 2,003–3,523 bp · −
OOC26_pgp086 · NC_067677.1 · 4,789–5,934 bp · −
trnQ-UUG · NC_067677.1 · 6,880–6,951 bp · −
trnS-GCU · NC_067677.1 · 8,184–8,271 bp · −
atpA · NC_067677.1 · 10,156–11,679 bp · −
atpF · NC_067677.1 · 11,788–13,033 bp · −
atpH · NC_067677.1 · 13,325–13,570 bp · −
atpI · NC_067677.1 · 14,571–15,314 bp · −
rps2 · NC_067677.1 · 15,540–16,250 bp · −
rpoC2 · NC_067677.1 · 16,468–20,649 bp · −
rpoC1 · NC_067677.1 · 20,814–23,647 bp · −
rpoB · NC_067677.1 · 23,674–26,886 bp · −
psbM · NC_067677.1 · 29,399–29,503 bp · −
trnD-GUC · NC_067677.1 · 30,022–30,095 bp · −
trnY-GUA · NC_067677.1 · 30,206–30,289 bp · −
trnE-UUC · NC_067677.1 · 30,367–30,439 bp · −
trnS-UGA · NC_067677.1 · 35,106–35,198 bp · −
trnfM-CAU · NC_067677.1 · 36,233–36,306 bp · −
rps14 · NC_067677.1 · 36,452–36,754 bp · −
psaB · NC_067677.1 · 36,877–39,081 bp · −
psaA · NC_067677.1 · 39,107–41,359 bp · −
ycf3 · NC_067677.1 · 42,133–44,080 bp · −
rps4 · NC_067677.1 · 45,327–45,932 bp · −
trnT-UGU · NC_067677.1 · 46,357–46,429 bp · −
ndhJ · NC_067677.1 · 48,715–49,191 bp · −
ndhK · NC_067677.1 · 49,302–49,979 bp · −
ndhC · NC_067677.1 · 50,031–50,393 bp · −
trnV-UAC · NC_067677.1 · 51,350–52,005 bp · −
atpE · NC_067677.1 · 52,459–52,860 bp · −
atpB · NC_067677.1 · 52,857–54,353 bp · −
psbJ · NC_067677.1 · 64,070–64,192 bp · −
psbL · NC_067677.1 · 64,327–64,443 bp · −
psbF · NC_067677.1 · 64,467–64,586 bp · −
psbE · NC_067677.1 · 64,601–64,852 bp · −
trnW-CCA · NC_067677.1 · 66,251–66,324 bp · −
trnP-UGG · NC_067677.1 · 66,493–66,566 bp · −
rpl20 · NC_067677.1 · 68,356–68,742 bp · −
rps12 · NC_067677.1 · 69,476–69,589 bp · −
rps12 · NC_067677.1 · 96,889–97,681 bp · −
clpP · NC_067677.1 · 69,708–71,629 bp · −
psbN · NC_067677.1 · 73,981–74,112 bp · −
rpoA · NC_067677.1 · 77,484–78,491 bp · −
rps11 · NC_067677.1 · 78,563–78,979 bp · −
rpl36 · NC_067677.1 · 79,095–79,208 bp · −
infA · NC_067677.1 · 79,304–79,537 bp · −
rps8 · NC_067677.1 · 79,665–80,069 bp · −
rpl14 · NC_067677.1 · 80,252–80,620 bp · −
rpl16 · NC_067677.1 · 80,753–82,020 bp · −
rps3 · NC_067677.1 · 82,164–82,826 bp · −
rpl22 · NC_067677.1 · 82,811–83,284 bp · −
rps19 · NC_067677.1 · 83,349–83,627 bp · −
rpl2 · NC_067677.1 · 83,696–85,174 bp · −
rpl23 · NC_067677.1 · 85,193–85,474 bp · −
trnI-CAU · NC_067677.1 · 85,640–85,713 bp · −
trnL-CAA · NC_067677.1 · 93,238–93,318 bp · −
ndhB · NC_067677.1 · 93,890–96,097 bp · −
rps7 · NC_067677.1 · 96,368–96,835 bp · −
trnN-GUU · NC_067677.1 · 107,833–107,904 bp · −
ndhF · NC_067677.1 · 109,270–111,507 bp · −
ndhD · NC_067677.1 · 114,282–115,811 bp · −
psaC · NC_067677.1 · 115,902–116,147 bp · −
ndhE · NC_067677.1 · 116,403–116,708 bp · −
ndhG · NC_067677.1 · 116,923–117,453 bp · −
ndhI · NC_067677.1 · 117,813–118,319 bp · −
ndhA · NC_067677.1 · 118,395–120,518 bp · −
ndhH · NC_067677.1 · 120,520–121,701 bp · −
rps15 · NC_067677.1 · 121,816–122,088 bp · −
ycf1 · NC_067677.1 · 122,516–128,038 bp · −
trnR-ACG · NC_067677.1 · 129,018–129,091 bp · −
rrn5 · NC_067677.1 · 129,335–129,455 bp · −
rrn4.5 · NC_067677.1 · 129,711–129,813 bp · −
rrn23 · NC_067677.1 · 129,912–132,722 bp · −
trnA-UGC · NC_067677.1 · 132,894–133,772 bp · −
trnI-GAU · NC_067677.1 · 133,837–134,855 bp · −
rrn16 · NC_067677.1 · 135,153–136,643 bp · −
trnV-GAC · NC_067677.1 · 136,870–136,941 bp · −
ycf15 · NC_067677.1 · 143,307–143,456 bp · −
ycf2 · NC_067677.1 · 143,646–150,476 bp · −
psbK · NC_067677.1 · 7,345–7,530 bp · +
psbI · NC_067677.1 · 7,918–8,028 bp · +
trnG-UCC · NC_067677.1 · 9,033–9,790 bp · +
trnR-UCU · NC_067677.1 · 9,981–10,052 bp · +
trnC-GCA · NC_067677.1 · 28,076–28,146 bp · +
petN · NC_067677.1 · 28,309–28,398 bp · +
trnT-GGU · NC_067677.1 · 31,049–31,120 bp · +
psbD · NC_067677.1 · 32,439–33,500 bp · +
psbC · NC_067677.1 · 33,448–34,869 bp · +
psbZ · NC_067677.1 · 35,539–35,727 bp · +
trnG-GCC · NC_067677.1 · 35,972–36,042 bp · +
trnS-GGA · NC_067677.1 · 44,944–45,030 bp · +
trnL-UAA · NC_067677.1 · 47,116–47,681 bp · +
trnF-GAA · NC_067677.1 · 47,975–48,047 bp · +
trnM-CAU · NC_067677.1 · 52,186–52,258 bp · +
rbcL · NC_067677.1 · 55,145–56,578 bp · +
accD · NC_067677.1 · 57,283–58,764 bp · +
psaI · NC_067677.1 · 59,464–59,574 bp · +
ycf4 · NC_067677.1 · 60,021–60,575 bp · +
cemA · NC_067677.1 · 61,166–61,855 bp · +
petA · NC_067677.1 · 62,070–63,032 bp · +
petL · NC_067677.1 · 65,745–65,840 bp · +
petG · NC_067677.1 · 66,015–66,128 bp · +
psaJ · NC_067677.1 · 66,848–66,982 bp · +
rpl33 · NC_067677.1 · 67,450–67,650 bp · +
rps18 · NC_067677.1 · 67,817–68,122 bp · +
rps12 · NC_067677.1 · 138,603–139,395 bp · +
psbB · NC_067677.1 · 72,102–73,628 bp · +
psbT · NC_067677.1 · 73,814–73,915 bp · +
psbH · NC_067677.1 · 74,218–74,436 bp · +
petB · NC_067677.1 · 74,562–75,927 bp · +
petD · NC_067677.1 · 76,116–77,307 bp · +
ycf2 · NC_067677.1 · 85,808–92,638 bp · +
ycf15 · NC_067677.1 · 92,828–92,977 bp · +
trnV-GAC · NC_067677.1 · 99,343–99,414 bp · +
rrn16 · NC_067677.1 · 99,641–101,131 bp · +
trnI-GAU · NC_067677.1 · 101,429–102,447 bp · +
trnA-UGC · NC_067677.1 · 102,512–103,390 bp · +
rrn23 · NC_067677.1 · 103,562–106,372 bp · +
rrn4.5 · NC_067677.1 · 106,471–106,573 bp · +
rrn5 · NC_067677.1 · 106,829–106,949 bp · +
trnR-ACG · NC_067677.1 · 107,193–107,266 bp · +
ycf1 · NC_067677.1 · 108,246–109,376 bp · +
rpl32 · NC_067677.1 · 111,976–112,146 bp · +
trnL-UAG · NC_067677.1 · 112,911–112,990 bp · +
ccsA · NC_067677.1 · 113,079–114,050 bp · +
trnN-GUU · NC_067677.1 · 128,380–128,451 bp · +
rps7 · NC_067677.1 · 139,449–139,916 bp · +
ndhB · NC_067677.1 · 140,187–142,394 bp · +
trnL-CAA · NC_067677.1 · 142,966–143,046 bp · +
trnI-CAU · NC_067677.1 · 150,571–150,644 bp · +
rpl23 · NC_067677.1 · 150,810–151,091 bp · +
rpl2 · NC_067677.1 · 151,110–152,588 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Isodon phyllostachys
ANNOTATED PLASTOME
NC_067677.1
152,699 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
ATP synthase
Ribosomal protein
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38175 76350 114524 152699 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK OOC26_pgp086 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 11 85 75 Locate
psbA gene − 393 1451 1059 Locate
trnK-UUU gene − 1683 4263 2581 Locate
matK gene − 2003 3523 1521 Locate
OOC26_pgp086 gene − 4789 5934 1146 Locate
trnQ-UUG gene − 6880 6951 72 Locate
psbK gene + 7345 7530 186 Locate
psbI gene + 7918 8028 111 Locate
trnS-GCU gene − 8184 8271 88 Locate
trnG-UCC gene + 9033 9790 758 Locate
trnR-UCU gene + 9981 10052 72 Locate
atpA gene − 10156 11679 1524 Locate
atpF gene − 11788 13033 1246 Locate
atpH gene − 13325 13570 246 Locate
atpI gene − 14571 15314 744 Locate
rps2 gene − 15540 16250 711 Locate
rpoC2 gene − 16468 20649 4182 Locate
rpoC1 gene − 20814 23647 2834 Locate
rpoB gene − 23674 26886 3213 Locate
trnC-GCA gene + 28076 28146 71 Locate
petN gene + 28309 28398 90 Locate
psbM gene − 29399 29503 105 Locate
trnD-GUC gene − 30022 30095 74 Locate
trnY-GUA gene − 30206 30289 84 Locate
trnE-UUC gene − 30367 30439 73 Locate
trnT-GGU gene + 31049 31120 72 Locate
psbD gene + 32439 33500 1062 Locate
psbC gene + 33448 34869 1422 Locate
trnS-UGA gene − 35106 35198 93 Locate
psbZ gene + 35539 35727 189 Locate
trnG-GCC gene + 35972 36042 71 Locate
trnfM-CAU gene − 36233 36306 74 Locate
rps14 gene − 36452 36754 303 Locate
psaB gene − 36877 39081 2205 Locate
psaA gene − 39107 41359 2253 Locate
ycf3 gene − 42133 44080 1948 Locate
trnS-GGA gene + 44944 45030 87 Locate
rps4 gene − 45327 45932 606 Locate
trnT-UGU gene − 46357 46429 73 Locate
trnL-UAA gene + 47116 47681 566 Locate
trnF-GAA gene + 47975 48047 73 Locate
ndhJ gene − 48715 49191 477 Locate
ndhK gene − 49302 49979 678 Locate
ndhC gene − 50031 50393 363 Locate
trnV-UAC gene − 51350 52005 656 Locate
trnM-CAU gene + 52186 52258 73 Locate
atpE gene − 52459 52860 402 Locate
atpB gene − 52857 54353 1497 Locate
rbcL gene + 55145 56578 1434 Locate
accD gene + 57283 58764 1482 Locate
psaI gene + 59464 59574 111 Locate
ycf4 gene + 60021 60575 555 Locate
cemA gene + 61166 61855 690 Locate
petA gene + 62070 63032 963 Locate
psbJ gene − 64070 64192 123 Locate
psbL gene − 64327 64443 117 Locate
psbF gene − 64467 64586 120 Locate
psbE gene − 64601 64852 252 Locate
petL gene + 65745 65840 96 Locate
petG gene + 66015 66128 114 Locate
trnW-CCA gene − 66251 66324 74 Locate
trnP-UGG gene − 66493 66566 74 Locate
psaJ gene + 66848 66982 135 Locate
rpl33 gene + 67450 67650 201 Locate
rps18 gene + 67817 68122 306 Locate
rpl20 gene − 68356 68742 387 Locate
rps12 gene − 69476 69589 114 Locate
clpP gene − 69708 71629 1922 Locate
psbB gene + 72102 73628 1527 Locate
psbT gene + 73814 73915 102 Locate
psbN gene − 73981 74112 132 Locate
psbH gene + 74218 74436 219 Locate
petB gene + 74562 75927 1366 Locate
petD gene + 76116 77307 1192 Locate
rpoA gene − 77484 78491 1008 Locate
rps11 gene − 78563 78979 417 Locate
rpl36 gene − 79095 79208 114 Locate
infA gene − 79304 79537 234 Locate
rps8 gene − 79665 80069 405 Locate
rpl14 gene − 80252 80620 369 Locate
rpl16 gene − 80753 82020 1268 Locate
rps3 gene − 82164 82826 663 Locate
rpl22 gene − 82811 83284 474 Locate
rps19 gene − 83349 83627 279 Locate
rpl2 gene − 83696 85174 1479 Locate
rpl23 gene − 85193 85474 282 Locate
trnI-CAU gene − 85640 85713 74 Locate
ycf2 gene + 85808 92638 6831 Locate
ycf15 gene + 92828 92977 150 Locate
trnL-CAA gene − 93238 93318 81 Locate
ndhB gene − 93890 96097 2208 Locate
rps7 gene − 96368 96835 468 Locate
rps12 gene − 96889 97681 793 Locate
trnV-GAC gene + 99343 99414 72 Locate
rrn16 gene + 99641 101131 1491 Locate
trnI-GAU gene + 101429 102447 1019 Locate
trnA-UGC gene + 102512 103390 879 Locate
rrn23 gene + 103562 106372 2811 Locate
rrn4.5 gene + 106471 106573 103 Locate
rrn5 gene + 106829 106949 121 Locate
trnR-ACG gene + 107193 107266 74 Locate
trnN-GUU gene − 107833 107904 72 Locate
ycf1 gene + 108246 109376 1131 Locate
ndhF gene − 109270 111507 2238 Locate
rpl32 gene + 111976 112146 171 Locate
trnL-UAG gene + 112911 112990 80 Locate
ccsA gene + 113079 114050 972 Locate
ndhD gene − 114282 115811 1530 Locate
psaC gene − 115902 116147 246 Locate
ndhE gene − 116403 116708 306 Locate
ndhG gene − 116923 117453 531 Locate
ndhI gene − 117813 118319 507 Locate
ndhA gene − 118395 120518 2124 Locate
ndhH gene − 120520 121701 1182 Locate
rps15 gene − 121816 122088 273 Locate
ycf1 gene − 122516 128038 5523 Locate
trnN-GUU gene + 128380 128451 72 Locate
trnR-ACG gene − 129018 129091 74 Locate
rrn5 gene − 129335 129455 121 Locate
rrn4.5 gene − 129711 129813 103 Locate
rrn23 gene − 129912 132722 2811 Locate
trnA-UGC gene − 132894 133772 879 Locate
trnI-GAU gene − 133837 134855 1019 Locate
rrn16 gene − 135153 136643 1491 Locate
trnV-GAC gene − 136870 136941 72 Locate
rps12 gene + 138603 139395 793 Locate
rps7 gene + 139449 139916 468 Locate
ndhB gene + 140187 142394 2208 Locate
trnL-CAA gene + 142966 143046 81 Locate
ycf15 gene − 143307 143456 150 Locate
ycf2 gene − 143646 150476 6831 Locate
trnI-CAU gene + 150571 150644 74 Locate
rpl23 gene + 150810 151091 282 Locate
rpl2 gene + 151110 152588 1479 Locate
Status Available
Accession NC_067677.1
Length 152,699 bp
GC content 37.6%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 16 Atp Synthase 6 Ribosomal Protein 25 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources