Isodon pleiophyllus chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · NC_067678.1 · 11–85 bp · −
psbA · NC_067678.1 · 393–1,451 bp · −
trnK-UUU · NC_067678.1 · 1,683–4,263 bp · −
matK · NC_067678.1 · 2,003–3,523 bp · −
OOC25_pgp086 · NC_067678.1 · 4,789–5,934 bp · −
trnQ-UUG · NC_067678.1 · 6,880–6,951 bp · −
trnS-GCU · NC_067678.1 · 8,184–8,271 bp · −
atpA · NC_067678.1 · 10,159–11,682 bp · −
atpF · NC_067678.1 · 11,791–13,035 bp · −
atpH · NC_067678.1 · 13,327–13,572 bp · −
atpI · NC_067678.1 · 14,573–15,316 bp · −
rps2 · NC_067678.1 · 15,542–16,252 bp · −
rpoC2 · NC_067678.1 · 16,470–20,651 bp · −
rpoC1 · NC_067678.1 · 20,816–23,649 bp · −
rpoB · NC_067678.1 · 23,676–26,888 bp · −
psbM · NC_067678.1 · 29,392–29,496 bp · −
trnD-GUC · NC_067678.1 · 30,015–30,088 bp · −
trnY-GUA · NC_067678.1 · 30,199–30,282 bp · −
trnE-UUC · NC_067678.1 · 30,360–30,432 bp · −
trnS-UGA · NC_067678.1 · 35,097–35,189 bp · −
trnfM-CAU · NC_067678.1 · 36,221–36,294 bp · −
rps14 · NC_067678.1 · 36,441–36,743 bp · −
psaB · NC_067678.1 · 36,866–39,070 bp · −
psaA · NC_067678.1 · 39,096–41,348 bp · −
ycf3 · NC_067678.1 · 42,123–44,070 bp · −
rps4 · NC_067678.1 · 45,317–45,922 bp · −
trnT-UGU · NC_067678.1 · 46,317–46,389 bp · −
ndhJ · NC_067678.1 · 48,674–49,150 bp · −
ndhK · NC_067678.1 · 49,261–49,938 bp · −
ndhC · NC_067678.1 · 49,990–50,352 bp · −
trnV-UAC · NC_067678.1 · 51,309–51,960 bp · −
atpE · NC_067678.1 · 52,414–52,815 bp · −
atpB · NC_067678.1 · 52,812–54,308 bp · −
psbJ · NC_067678.1 · 64,014–64,136 bp · −
psbL · NC_067678.1 · 64,271–64,387 bp · −
psbF · NC_067678.1 · 64,411–64,530 bp · −
psbE · NC_067678.1 · 64,545–64,796 bp · −
trnW-CCA · NC_067678.1 · 66,216–66,289 bp · −
trnP-UGG · NC_067678.1 · 66,458–66,531 bp · −
rpl20 · NC_067678.1 · 68,319–68,705 bp · −
rps12 · NC_067678.1 · 69,433–69,546 bp · −
rps12 · NC_067678.1 · 96,837–97,629 bp · −
clpP · NC_067678.1 · 69,665–71,584 bp · −
psbN · NC_067678.1 · 73,934–74,065 bp · −
rpoA · NC_067678.1 · 77,439–78,446 bp · −
rps11 · NC_067678.1 · 78,518–78,934 bp · −
rpl36 · NC_067678.1 · 79,050–79,163 bp · −
infA · NC_067678.1 · 79,259–79,492 bp · −
rps8 · NC_067678.1 · 79,620–80,024 bp · −
rpl14 · NC_067678.1 · 80,207–80,575 bp · −
rpl16 · NC_067678.1 · 80,709–81,969 bp · −
rps3 · NC_067678.1 · 82,113–82,775 bp · −
rpl22 · NC_067678.1 · 82,760–83,233 bp · −
rps19 · NC_067678.1 · 83,298–83,576 bp · −
rpl2 · NC_067678.1 · 83,644–85,122 bp · −
rpl23 · NC_067678.1 · 85,141–85,422 bp · −
trnI-CAU · NC_067678.1 · 85,588–85,661 bp · −
trnL-CAA · NC_067678.1 · 93,186–93,266 bp · −
ndhB · NC_067678.1 · 93,838–96,045 bp · −
rps7 · NC_067678.1 · 96,316–96,783 bp · −
trnN-GUU · NC_067678.1 · 107,779–107,850 bp · −
ndhF · NC_067678.1 · 109,216–111,447 bp · −
ndhD · NC_067678.1 · 114,229–115,758 bp · −
psaC · NC_067678.1 · 115,849–116,094 bp · −
ndhE · NC_067678.1 · 116,350–116,655 bp · −
ndhG · NC_067678.1 · 116,871–117,401 bp · −
ndhI · NC_067678.1 · 117,761–118,267 bp · −
ndhA · NC_067678.1 · 118,348–120,471 bp · −
ndhH · NC_067678.1 · 120,473–121,654 bp · −
rps15 · NC_067678.1 · 121,769–122,041 bp · −
ycf1 · NC_067678.1 · 122,471–127,993 bp · −
trnR-ACG · NC_067678.1 · 128,973–129,046 bp · −
rrn5 · NC_067678.1 · 129,280–129,400 bp · −
rrn4.5 · NC_067678.1 · 129,656–129,758 bp · −
rrn23 · NC_067678.1 · 129,857–132,667 bp · −
trnA-UGC · NC_067678.1 · 132,839–133,725 bp · −
trnI-GAU · NC_067678.1 · 133,790–134,808 bp · −
rrn16 · NC_067678.1 · 135,106–136,596 bp · −
trnV-GAC · NC_067678.1 · 136,823–136,894 bp · −
ycf15 · NC_067678.1 · 143,260–143,409 bp · −
ycf2 · NC_067678.1 · 143,599–150,429 bp · −
psbK · NC_067678.1 · 7,345–7,530 bp · +
psbI · NC_067678.1 · 7,918–8,028 bp · +
trnG-UCC · NC_067678.1 · 9,034–9,793 bp · +
trnR-UCU · NC_067678.1 · 9,984–10,055 bp · +
trnC-GCA · NC_067678.1 · 28,078–28,148 bp · +
petN · NC_067678.1 · 28,311–28,400 bp · +
trnT-GGU · NC_067678.1 · 31,042–31,113 bp · +
psbD · NC_067678.1 · 32,431–33,492 bp · +
psbC · NC_067678.1 · 33,440–34,861 bp · +
psbZ · NC_067678.1 · 35,530–35,718 bp · +
trnG-GCC · NC_067678.1 · 35,963–36,033 bp · +
trnS-GGA · NC_067678.1 · 44,934–45,020 bp · +
trnL-UAA · NC_067678.1 · 47,076–47,640 bp · +
trnF-GAA · NC_067678.1 · 47,934–48,006 bp · +
trnM-CAU · NC_067678.1 · 52,141–52,213 bp · +
rbcL · NC_067678.1 · 55,099–56,532 bp · +
accD · NC_067678.1 · 57,231–58,712 bp · +
psaI · NC_067678.1 · 59,413–59,523 bp · +
ycf4 · NC_067678.1 · 59,970–60,524 bp · +
cemA · NC_067678.1 · 61,108–61,797 bp · +
petA · NC_067678.1 · 62,012–62,974 bp · +
petL · NC_067678.1 · 65,710–65,805 bp · +
petG · NC_067678.1 · 65,980–66,093 bp · +
psaJ · NC_067678.1 · 66,813–66,947 bp · +
rpl33 · NC_067678.1 · 67,411–67,611 bp · +
rps18 · NC_067678.1 · 67,778–68,083 bp · +
rps12 · NC_067678.1 · 138,556–139,348 bp · +
psbB · NC_067678.1 · 72,057–73,583 bp · +
psbT · NC_067678.1 · 73,767–73,868 bp · +
psbH · NC_067678.1 · 74,171–74,389 bp · +
petB · NC_067678.1 · 74,515–75,881 bp · +
petD · NC_067678.1 · 76,070–77,262 bp · +
ycf2 · NC_067678.1 · 85,756–92,586 bp · +
ycf15 · NC_067678.1 · 92,776–92,925 bp · +
trnV-GAC · NC_067678.1 · 99,291–99,362 bp · +
rrn16 · NC_067678.1 · 99,589–101,079 bp · +
trnI-GAU · NC_067678.1 · 101,377–102,395 bp · +
trnA-UGC · NC_067678.1 · 102,460–103,346 bp · +
rrn23 · NC_067678.1 · 103,518–106,328 bp · +
rrn4.5 · NC_067678.1 · 106,427–106,529 bp · +
rrn5 · NC_067678.1 · 106,785–106,905 bp · +
trnR-ACG · NC_067678.1 · 107,139–107,212 bp · +
ycf1 · NC_067678.1 · 108,192–109,322 bp · +
rpl32 · NC_067678.1 · 111,923–112,093 bp · +
trnL-UAG · NC_067678.1 · 112,858–112,937 bp · +
ccsA · NC_067678.1 · 113,026–113,997 bp · +
trnN-GUU · NC_067678.1 · 128,335–128,406 bp · +
rps7 · NC_067678.1 · 139,402–139,869 bp · +
ndhB · NC_067678.1 · 140,140–142,347 bp · +
trnL-CAA · NC_067678.1 · 142,919–142,999 bp · +
trnI-CAU · NC_067678.1 · 150,524–150,597 bp · +
rpl23 · NC_067678.1 · 150,763–151,044 bp · +
rpl2 · NC_067678.1 · 151,063–152,541 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Isodon pleiophyllus
ANNOTATED PLASTOME
NC_067678.1
152,651 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
ATP synthase
Ribosomal protein
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38163 76326 114488 152651 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK OOC25_pgp086 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 11 85 75 Locate
psbA gene − 393 1451 1059 Locate
trnK-UUU gene − 1683 4263 2581 Locate
matK gene − 2003 3523 1521 Locate
OOC25_pgp086 gene − 4789 5934 1146 Locate
trnQ-UUG gene − 6880 6951 72 Locate
psbK gene + 7345 7530 186 Locate
psbI gene + 7918 8028 111 Locate
trnS-GCU gene − 8184 8271 88 Locate
trnG-UCC gene + 9034 9793 760 Locate
trnR-UCU gene + 9984 10055 72 Locate
atpA gene − 10159 11682 1524 Locate
atpF gene − 11791 13035 1245 Locate
atpH gene − 13327 13572 246 Locate
atpI gene − 14573 15316 744 Locate
rps2 gene − 15542 16252 711 Locate
rpoC2 gene − 16470 20651 4182 Locate
rpoC1 gene − 20816 23649 2834 Locate
rpoB gene − 23676 26888 3213 Locate
trnC-GCA gene + 28078 28148 71 Locate
petN gene + 28311 28400 90 Locate
psbM gene − 29392 29496 105 Locate
trnD-GUC gene − 30015 30088 74 Locate
trnY-GUA gene − 30199 30282 84 Locate
trnE-UUC gene − 30360 30432 73 Locate
trnT-GGU gene + 31042 31113 72 Locate
psbD gene + 32431 33492 1062 Locate
psbC gene + 33440 34861 1422 Locate
trnS-UGA gene − 35097 35189 93 Locate
psbZ gene + 35530 35718 189 Locate
trnG-GCC gene + 35963 36033 71 Locate
trnfM-CAU gene − 36221 36294 74 Locate
rps14 gene − 36441 36743 303 Locate
psaB gene − 36866 39070 2205 Locate
psaA gene − 39096 41348 2253 Locate
ycf3 gene − 42123 44070 1948 Locate
trnS-GGA gene + 44934 45020 87 Locate
rps4 gene − 45317 45922 606 Locate
trnT-UGU gene − 46317 46389 73 Locate
trnL-UAA gene + 47076 47640 565 Locate
trnF-GAA gene + 47934 48006 73 Locate
ndhJ gene − 48674 49150 477 Locate
ndhK gene − 49261 49938 678 Locate
ndhC gene − 49990 50352 363 Locate
trnV-UAC gene − 51309 51960 652 Locate
trnM-CAU gene + 52141 52213 73 Locate
atpE gene − 52414 52815 402 Locate
atpB gene − 52812 54308 1497 Locate
rbcL gene + 55099 56532 1434 Locate
accD gene + 57231 58712 1482 Locate
psaI gene + 59413 59523 111 Locate
ycf4 gene + 59970 60524 555 Locate
cemA gene + 61108 61797 690 Locate
petA gene + 62012 62974 963 Locate
psbJ gene − 64014 64136 123 Locate
psbL gene − 64271 64387 117 Locate
psbF gene − 64411 64530 120 Locate
psbE gene − 64545 64796 252 Locate
petL gene + 65710 65805 96 Locate
petG gene + 65980 66093 114 Locate
trnW-CCA gene − 66216 66289 74 Locate
trnP-UGG gene − 66458 66531 74 Locate
psaJ gene + 66813 66947 135 Locate
rpl33 gene + 67411 67611 201 Locate
rps18 gene + 67778 68083 306 Locate
rpl20 gene − 68319 68705 387 Locate
rps12 gene − 69433 69546 114 Locate
clpP gene − 69665 71584 1920 Locate
psbB gene + 72057 73583 1527 Locate
psbT gene + 73767 73868 102 Locate
psbN gene − 73934 74065 132 Locate
psbH gene + 74171 74389 219 Locate
petB gene + 74515 75881 1367 Locate
petD gene + 76070 77262 1193 Locate
rpoA gene − 77439 78446 1008 Locate
rps11 gene − 78518 78934 417 Locate
rpl36 gene − 79050 79163 114 Locate
infA gene − 79259 79492 234 Locate
rps8 gene − 79620 80024 405 Locate
rpl14 gene − 80207 80575 369 Locate
rpl16 gene − 80709 81969 1261 Locate
rps3 gene − 82113 82775 663 Locate
rpl22 gene − 82760 83233 474 Locate
rps19 gene − 83298 83576 279 Locate
rpl2 gene − 83644 85122 1479 Locate
rpl23 gene − 85141 85422 282 Locate
trnI-CAU gene − 85588 85661 74 Locate
ycf2 gene + 85756 92586 6831 Locate
ycf15 gene + 92776 92925 150 Locate
trnL-CAA gene − 93186 93266 81 Locate
ndhB gene − 93838 96045 2208 Locate
rps7 gene − 96316 96783 468 Locate
rps12 gene − 96837 97629 793 Locate
trnV-GAC gene + 99291 99362 72 Locate
rrn16 gene + 99589 101079 1491 Locate
trnI-GAU gene + 101377 102395 1019 Locate
trnA-UGC gene + 102460 103346 887 Locate
rrn23 gene + 103518 106328 2811 Locate
rrn4.5 gene + 106427 106529 103 Locate
rrn5 gene + 106785 106905 121 Locate
trnR-ACG gene + 107139 107212 74 Locate
trnN-GUU gene − 107779 107850 72 Locate
ycf1 gene + 108192 109322 1131 Locate
ndhF gene − 109216 111447 2232 Locate
rpl32 gene + 111923 112093 171 Locate
trnL-UAG gene + 112858 112937 80 Locate
ccsA gene + 113026 113997 972 Locate
ndhD gene − 114229 115758 1530 Locate
psaC gene − 115849 116094 246 Locate
ndhE gene − 116350 116655 306 Locate
ndhG gene − 116871 117401 531 Locate
ndhI gene − 117761 118267 507 Locate
ndhA gene − 118348 120471 2124 Locate
ndhH gene − 120473 121654 1182 Locate
rps15 gene − 121769 122041 273 Locate
ycf1 gene − 122471 127993 5523 Locate
trnN-GUU gene + 128335 128406 72 Locate
trnR-ACG gene − 128973 129046 74 Locate
rrn5 gene − 129280 129400 121 Locate
rrn4.5 gene − 129656 129758 103 Locate
rrn23 gene − 129857 132667 2811 Locate
trnA-UGC gene − 132839 133725 887 Locate
trnI-GAU gene − 133790 134808 1019 Locate
rrn16 gene − 135106 136596 1491 Locate
trnV-GAC gene − 136823 136894 72 Locate
rps12 gene + 138556 139348 793 Locate
rps7 gene + 139402 139869 468 Locate
ndhB gene + 140140 142347 2208 Locate
trnL-CAA gene + 142919 142999 81 Locate
ycf15 gene − 143260 143409 150 Locate
ycf2 gene − 143599 150429 6831 Locate
trnI-CAU gene + 150524 150597 74 Locate
rpl23 gene + 150763 151044 282 Locate
rpl2 gene + 151063 152541 1479 Locate
Status Available
Accession NC_067678.1
Length 152,651 bp
GC content 37.6%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 16 Atp Synthase 6 Ribosomal Protein 25 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources