Isodon polystachys chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · NC_067697.1 · 11–85 bp · −
psbA · NC_067697.1 · 393–1,451 bp · −
trnK-UUU · NC_067697.1 · 1,683–4,262 bp · −
matK · NC_067697.1 · 2,003–3,523 bp · −
ON846_pgp086 · NC_067697.1 · 4,789–5,934 bp · −
trnQ-UUG · NC_067697.1 · 6,880–6,951 bp · −
trnS-GCU · NC_067697.1 · 8,183–8,270 bp · −
atpA · NC_067697.1 · 10,156–11,679 bp · −
atpF · NC_067697.1 · 11,789–13,034 bp · −
atpH · NC_067697.1 · 13,326–13,571 bp · −
atpI · NC_067697.1 · 14,572–15,315 bp · −
rps2 · NC_067697.1 · 15,541–16,251 bp · −
rpoC2 · NC_067697.1 · 16,469–20,650 bp · −
rpoC1 · NC_067697.1 · 20,815–23,648 bp · −
rpoB · NC_067697.1 · 23,675–26,887 bp · −
psbM · NC_067697.1 · 29,400–29,504 bp · −
trnD-GUC · NC_067697.1 · 30,023–30,096 bp · −
trnY-GUA · NC_067697.1 · 30,207–30,290 bp · −
trnE-UUC · NC_067697.1 · 30,368–30,440 bp · −
trnS-UGA · NC_067697.1 · 35,106–35,198 bp · −
trnfM-CAU · NC_067697.1 · 36,232–36,305 bp · −
rps14 · NC_067697.1 · 36,451–36,753 bp · −
psaB · NC_067697.1 · 36,876–39,080 bp · −
psaA · NC_067697.1 · 39,106–41,358 bp · −
ycf3 · NC_067697.1 · 42,127–44,074 bp · −
rps4 · NC_067697.1 · 45,320–45,925 bp · −
trnT-UGU · NC_067697.1 · 46,350–46,422 bp · −
ndhJ · NC_067697.1 · 48,709–49,185 bp · −
ndhK · NC_067697.1 · 49,296–49,973 bp · −
ndhC · NC_067697.1 · 50,025–50,387 bp · −
trnV-UAC · NC_067697.1 · 51,344–51,999 bp · −
atpE · NC_067697.1 · 52,453–52,854 bp · −
atpB · NC_067697.1 · 52,851–54,347 bp · −
psbJ · NC_067697.1 · 64,064–64,186 bp · −
psbL · NC_067697.1 · 64,321–64,437 bp · −
psbF · NC_067697.1 · 64,461–64,580 bp · −
psbE · NC_067697.1 · 64,595–64,846 bp · −
trnW-CCA · NC_067697.1 · 66,245–66,318 bp · −
trnP-UGG · NC_067697.1 · 66,487–66,560 bp · −
rpl20 · NC_067697.1 · 68,345–68,731 bp · −
rps12 · NC_067697.1 · 69,464–69,577 bp · −
rps12 · NC_067697.1 · 96,876–97,668 bp · −
clpP · NC_067697.1 · 69,696–71,617 bp · −
psbN · NC_067697.1 · 73,967–74,098 bp · −
rpoA · NC_067697.1 · 77,472–78,479 bp · −
rps11 · NC_067697.1 · 78,551–78,967 bp · −
rpl36 · NC_067697.1 · 79,083–79,196 bp · −
infA · NC_067697.1 · 79,292–79,525 bp · −
rps8 · NC_067697.1 · 79,651–80,055 bp · −
rpl14 · NC_067697.1 · 80,238–80,606 bp · −
rpl16 · NC_067697.1 · 80,740–82,007 bp · −
rps3 · NC_067697.1 · 82,151–82,813 bp · −
rpl22 · NC_067697.1 · 82,798–83,271 bp · −
rps19 · NC_067697.1 · 83,336–83,614 bp · −
rpl2 · NC_067697.1 · 83,683–85,161 bp · −
rpl23 · NC_067697.1 · 85,180–85,461 bp · −
trnI-CAU · NC_067697.1 · 85,627–85,700 bp · −
trnL-CAA · NC_067697.1 · 93,225–93,305 bp · −
ndhB · NC_067697.1 · 93,877–96,084 bp · −
rps7 · NC_067697.1 · 96,355–96,822 bp · −
trnN-GUU · NC_067697.1 · 107,820–107,891 bp · −
ndhF · NC_067697.1 · 109,257–111,488 bp · −
ndhD · NC_067697.1 · 114,262–115,791 bp · −
psaC · NC_067697.1 · 115,882–116,127 bp · −
ndhE · NC_067697.1 · 116,383–116,688 bp · −
ndhG · NC_067697.1 · 116,903–117,433 bp · −
ndhI · NC_067697.1 · 117,793–118,299 bp · −
ndhA · NC_067697.1 · 118,375–120,498 bp · −
ndhH · NC_067697.1 · 120,500–121,681 bp · −
rps15 · NC_067697.1 · 121,796–122,068 bp · −
ycf1 · NC_067697.1 · 122,498–128,020 bp · −
trnR-ACG · NC_067697.1 · 129,000–129,073 bp · −
rrn5 · NC_067697.1 · 129,317–129,437 bp · −
rrn4.5 · NC_067697.1 · 129,693–129,795 bp · −
rrn23 · NC_067697.1 · 129,894–132,704 bp · −
trnA-UGC · NC_067697.1 · 132,876–133,754 bp · −
trnI-GAU · NC_067697.1 · 133,819–134,837 bp · −
rrn16 · NC_067697.1 · 135,135–136,625 bp · −
trnV-GAC · NC_067697.1 · 136,852–136,923 bp · −
ycf15 · NC_067697.1 · 143,289–143,438 bp · −
ycf2 · NC_067697.1 · 143,628–150,458 bp · −
psbK · NC_067697.1 · 7,345–7,530 bp · +
psbI · NC_067697.1 · 7,918–8,028 bp · +
trnG-UCC · NC_067697.1 · 9,032–9,790 bp · +
trnR-UCU · NC_067697.1 · 9,981–10,052 bp · +
trnC-GCA · NC_067697.1 · 28,077–28,147 bp · +
petN · NC_067697.1 · 28,310–28,399 bp · +
trnT-GGU · NC_067697.1 · 31,050–31,121 bp · +
psbD · NC_067697.1 · 32,440–33,501 bp · +
psbC · NC_067697.1 · 33,449–34,870 bp · +
psbZ · NC_067697.1 · 35,539–35,727 bp · +
trnG-GCC · NC_067697.1 · 35,972–36,042 bp · +
trnS-GGA · NC_067697.1 · 44,937–45,023 bp · +
trnL-UAA · NC_067697.1 · 47,109–47,675 bp · +
trnF-GAA · NC_067697.1 · 47,969–48,041 bp · +
trnM-CAU · NC_067697.1 · 52,180–52,252 bp · +
rbcL · NC_067697.1 · 55,139–56,572 bp · +
accD · NC_067697.1 · 57,277–58,758 bp · +
psaI · NC_067697.1 · 59,458–59,568 bp · +
ycf4 · NC_067697.1 · 60,014–60,568 bp · +
cemA · NC_067697.1 · 61,160–61,849 bp · +
petA · NC_067697.1 · 62,064–63,026 bp · +
petL · NC_067697.1 · 65,739–65,834 bp · +
petG · NC_067697.1 · 66,009–66,122 bp · +
psaJ · NC_067697.1 · 66,842–66,976 bp · +
rpl33 · NC_067697.1 · 67,438–67,638 bp · +
rps18 · NC_067697.1 · 67,805–68,110 bp · +
rps12 · NC_067697.1 · 138,585–139,377 bp · +
psbB · NC_067697.1 · 72,090–73,616 bp · +
psbT · NC_067697.1 · 73,800–73,901 bp · +
psbH · NC_067697.1 · 74,204–74,422 bp · +
petB · NC_067697.1 · 74,548–75,914 bp · +
petD · NC_067697.1 · 76,103–77,295 bp · +
ycf2 · NC_067697.1 · 85,795–92,625 bp · +
ycf15 · NC_067697.1 · 92,815–92,964 bp · +
trnV-GAC · NC_067697.1 · 99,330–99,401 bp · +
rrn16 · NC_067697.1 · 99,628–101,118 bp · +
trnI-GAU · NC_067697.1 · 101,416–102,434 bp · +
trnA-UGC · NC_067697.1 · 102,499–103,377 bp · +
rrn23 · NC_067697.1 · 103,549–106,359 bp · +
rrn4.5 · NC_067697.1 · 106,458–106,560 bp · +
rrn5 · NC_067697.1 · 106,816–106,936 bp · +
trnR-ACG · NC_067697.1 · 107,180–107,253 bp · +
ycf1 · NC_067697.1 · 108,233–109,363 bp · +
rpl32 · NC_067697.1 · 111,957–112,127 bp · +
trnL-UAG · NC_067697.1 · 112,891–112,970 bp · +
ccsA · NC_067697.1 · 113,059–114,030 bp · +
trnN-GUU · NC_067697.1 · 128,362–128,433 bp · +
rps7 · NC_067697.1 · 139,431–139,898 bp · +
ndhB · NC_067697.1 · 140,169–142,376 bp · +
trnL-CAA · NC_067697.1 · 142,948–143,028 bp · +
trnI-CAU · NC_067697.1 · 150,553–150,626 bp · +
rpl23 · NC_067697.1 · 150,792–151,073 bp · +
rpl2 · NC_067697.1 · 151,092–152,570 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Isodon polystachys
ANNOTATED PLASTOME
NC_067697.1
152,681 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
ATP synthase
Ribosomal protein
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38170 76340 114511 152681 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK ON846_pgp086 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 11 85 75 Locate
psbA gene − 393 1451 1059 Locate
trnK-UUU gene − 1683 4262 2580 Locate
matK gene − 2003 3523 1521 Locate
ON846_pgp086 gene − 4789 5934 1146 Locate
trnQ-UUG gene − 6880 6951 72 Locate
psbK gene + 7345 7530 186 Locate
psbI gene + 7918 8028 111 Locate
trnS-GCU gene − 8183 8270 88 Locate
trnG-UCC gene + 9032 9790 759 Locate
trnR-UCU gene + 9981 10052 72 Locate
atpA gene − 10156 11679 1524 Locate
atpF gene − 11789 13034 1246 Locate
atpH gene − 13326 13571 246 Locate
atpI gene − 14572 15315 744 Locate
rps2 gene − 15541 16251 711 Locate
rpoC2 gene − 16469 20650 4182 Locate
rpoC1 gene − 20815 23648 2834 Locate
rpoB gene − 23675 26887 3213 Locate
trnC-GCA gene + 28077 28147 71 Locate
petN gene + 28310 28399 90 Locate
psbM gene − 29400 29504 105 Locate
trnD-GUC gene − 30023 30096 74 Locate
trnY-GUA gene − 30207 30290 84 Locate
trnE-UUC gene − 30368 30440 73 Locate
trnT-GGU gene + 31050 31121 72 Locate
psbD gene + 32440 33501 1062 Locate
psbC gene + 33449 34870 1422 Locate
trnS-UGA gene − 35106 35198 93 Locate
psbZ gene + 35539 35727 189 Locate
trnG-GCC gene + 35972 36042 71 Locate
trnfM-CAU gene − 36232 36305 74 Locate
rps14 gene − 36451 36753 303 Locate
psaB gene − 36876 39080 2205 Locate
psaA gene − 39106 41358 2253 Locate
ycf3 gene − 42127 44074 1948 Locate
trnS-GGA gene + 44937 45023 87 Locate
rps4 gene − 45320 45925 606 Locate
trnT-UGU gene − 46350 46422 73 Locate
trnL-UAA gene + 47109 47675 567 Locate
trnF-GAA gene + 47969 48041 73 Locate
ndhJ gene − 48709 49185 477 Locate
ndhK gene − 49296 49973 678 Locate
ndhC gene − 50025 50387 363 Locate
trnV-UAC gene − 51344 51999 656 Locate
trnM-CAU gene + 52180 52252 73 Locate
atpE gene − 52453 52854 402 Locate
atpB gene − 52851 54347 1497 Locate
rbcL gene + 55139 56572 1434 Locate
accD gene + 57277 58758 1482 Locate
psaI gene + 59458 59568 111 Locate
ycf4 gene + 60014 60568 555 Locate
cemA gene + 61160 61849 690 Locate
petA gene + 62064 63026 963 Locate
psbJ gene − 64064 64186 123 Locate
psbL gene − 64321 64437 117 Locate
psbF gene − 64461 64580 120 Locate
psbE gene − 64595 64846 252 Locate
petL gene + 65739 65834 96 Locate
petG gene + 66009 66122 114 Locate
trnW-CCA gene − 66245 66318 74 Locate
trnP-UGG gene − 66487 66560 74 Locate
psaJ gene + 66842 66976 135 Locate
rpl33 gene + 67438 67638 201 Locate
rps18 gene + 67805 68110 306 Locate
rpl20 gene − 68345 68731 387 Locate
rps12 gene − 69464 69577 114 Locate
clpP gene − 69696 71617 1922 Locate
psbB gene + 72090 73616 1527 Locate
psbT gene + 73800 73901 102 Locate
psbN gene − 73967 74098 132 Locate
psbH gene + 74204 74422 219 Locate
petB gene + 74548 75914 1367 Locate
petD gene + 76103 77295 1193 Locate
rpoA gene − 77472 78479 1008 Locate
rps11 gene − 78551 78967 417 Locate
rpl36 gene − 79083 79196 114 Locate
infA gene − 79292 79525 234 Locate
rps8 gene − 79651 80055 405 Locate
rpl14 gene − 80238 80606 369 Locate
rpl16 gene − 80740 82007 1268 Locate
rps3 gene − 82151 82813 663 Locate
rpl22 gene − 82798 83271 474 Locate
rps19 gene − 83336 83614 279 Locate
rpl2 gene − 83683 85161 1479 Locate
rpl23 gene − 85180 85461 282 Locate
trnI-CAU gene − 85627 85700 74 Locate
ycf2 gene + 85795 92625 6831 Locate
ycf15 gene + 92815 92964 150 Locate
trnL-CAA gene − 93225 93305 81 Locate
ndhB gene − 93877 96084 2208 Locate
rps7 gene − 96355 96822 468 Locate
rps12 gene − 96876 97668 793 Locate
trnV-GAC gene + 99330 99401 72 Locate
rrn16 gene + 99628 101118 1491 Locate
trnI-GAU gene + 101416 102434 1019 Locate
trnA-UGC gene + 102499 103377 879 Locate
rrn23 gene + 103549 106359 2811 Locate
rrn4.5 gene + 106458 106560 103 Locate
rrn5 gene + 106816 106936 121 Locate
trnR-ACG gene + 107180 107253 74 Locate
trnN-GUU gene − 107820 107891 72 Locate
ycf1 gene + 108233 109363 1131 Locate
ndhF gene − 109257 111488 2232 Locate
rpl32 gene + 111957 112127 171 Locate
trnL-UAG gene + 112891 112970 80 Locate
ccsA gene + 113059 114030 972 Locate
ndhD gene − 114262 115791 1530 Locate
psaC gene − 115882 116127 246 Locate
ndhE gene − 116383 116688 306 Locate
ndhG gene − 116903 117433 531 Locate
ndhI gene − 117793 118299 507 Locate
ndhA gene − 118375 120498 2124 Locate
ndhH gene − 120500 121681 1182 Locate
rps15 gene − 121796 122068 273 Locate
ycf1 gene − 122498 128020 5523 Locate
trnN-GUU gene + 128362 128433 72 Locate
trnR-ACG gene − 129000 129073 74 Locate
rrn5 gene − 129317 129437 121 Locate
rrn4.5 gene − 129693 129795 103 Locate
rrn23 gene − 129894 132704 2811 Locate
trnA-UGC gene − 132876 133754 879 Locate
trnI-GAU gene − 133819 134837 1019 Locate
rrn16 gene − 135135 136625 1491 Locate
trnV-GAC gene − 136852 136923 72 Locate
rps12 gene + 138585 139377 793 Locate
rps7 gene + 139431 139898 468 Locate
ndhB gene + 140169 142376 2208 Locate
trnL-CAA gene + 142948 143028 81 Locate
ycf15 gene − 143289 143438 150 Locate
ycf2 gene − 143628 150458 6831 Locate
trnI-CAU gene + 150553 150626 74 Locate
rpl23 gene + 150792 151073 282 Locate
rpl2 gene + 151092 152570 1479 Locate
Status Available
Accession NC_067697.1
Length 152,681 bp
GC content 37.6%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 16 Atp Synthase 6 Ribosomal Protein 25 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources