Isodon ramosissimus chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · NC_067709.1 · 13–87 bp · −
psbA · NC_067709.1 · 382–1,440 bp · −
trnK-UUU · NC_067709.1 · 1,672–4,242 bp · −
matK · NC_067709.1 · 1,987–3,507 bp · −
ON845_pgp086 · NC_067709.1 · 4,771–5,911 bp · −
trnQ-UUG · NC_067709.1 · 6,866–6,937 bp · −
trnS-GCU · NC_067709.1 · 8,173–8,260 bp · −
atpA · NC_067709.1 · 10,176–11,699 bp · −
atpF · NC_067709.1 · 11,807–13,052 bp · −
atpH · NC_067709.1 · 13,343–13,588 bp · −
atpI · NC_067709.1 · 14,588–15,331 bp · −
rps2 · NC_067709.1 · 15,557–16,267 bp · −
rpoC2 · NC_067709.1 · 16,481–20,662 bp · −
rpoC1 · NC_067709.1 · 20,827–23,658 bp · −
rpoB · NC_067709.1 · 23,685–26,897 bp · −
psbM · NC_067709.1 · 29,366–29,470 bp · −
trnD-GUC · NC_067709.1 · 29,985–30,058 bp · −
trnY-GUA · NC_067709.1 · 30,169–30,252 bp · −
trnE-UUC · NC_067709.1 · 30,330–30,402 bp · −
trnS-UGA · NC_067709.1 · 35,113–35,205 bp · −
trnfM-CAU · NC_067709.1 · 36,220–36,293 bp · −
rps14 · NC_067709.1 · 36,444–36,746 bp · −
psaB · NC_067709.1 · 36,869–39,073 bp · −
psaA · NC_067709.1 · 39,099–41,351 bp · −
ycf3 · NC_067709.1 · 42,120–44,079 bp · −
rps4 · NC_067709.1 · 45,313–45,918 bp · −
trnT-UGU · NC_067709.1 · 46,312–46,384 bp · −
ndhJ · NC_067709.1 · 48,633–49,109 bp · −
ndhK · NC_067709.1 · 49,220–49,897 bp · −
ndhC · NC_067709.1 · 49,949–50,311 bp · −
trnV-UAC · NC_067709.1 · 51,258–51,913 bp · −
atpE · NC_067709.1 · 52,367–52,768 bp · −
atpB · NC_067709.1 · 52,765–54,261 bp · −
psbJ · NC_067709.1 · 63,901–64,023 bp · −
psbL · NC_067709.1 · 64,158–64,274 bp · −
psbF · NC_067709.1 · 64,298–64,417 bp · −
psbE · NC_067709.1 · 64,432–64,683 bp · −
trnW-CCA · NC_067709.1 · 66,077–66,150 bp · −
trnP-UGG · NC_067709.1 · 66,319–66,392 bp · −
rpl20 · NC_067709.1 · 68,169–68,555 bp · −
rps12 · NC_067709.1 · 69,288–69,401 bp · −
rps12 · NC_067709.1 · 96,624–97,417 bp · −
clpP · NC_067709.1 · 69,519–71,429 bp · −
psbN · NC_067709.1 · 73,780–73,911 bp · −
rpoA · NC_067709.1 · 77,292–78,305 bp · −
rps11 · NC_067709.1 · 78,377–78,793 bp · −
rpl36 · NC_067709.1 · 78,909–79,022 bp · −
infA · NC_067709.1 · 79,118–79,351 bp · −
rps8 · NC_067709.1 · 79,477–79,881 bp · −
rpl14 · NC_067709.1 · 80,053–80,421 bp · −
rpl16 · NC_067709.1 · 80,555–81,738 bp · −
rps3 · NC_067709.1 · 81,887–82,549 bp · −
rpl22 · NC_067709.1 · 82,534–83,007 bp · −
rps19 · NC_067709.1 · 83,072–83,350 bp · −
rpl2 · NC_067709.1 · 83,418–84,896 bp · −
rpl23 · NC_067709.1 · 84,915–85,196 bp · −
trnI-CAU · NC_067709.1 · 85,362–85,435 bp · −
trnL-CAA · NC_067709.1 · 92,972–93,052 bp · −
ndhB · NC_067709.1 · 93,625–95,832 bp · −
rps7 · NC_067709.1 · 96,103–96,570 bp · −
trnN-GUU · NC_067709.1 · 107,574–107,645 bp · −
ndhF · NC_067709.1 · 109,011–111,242 bp · −
ndhD · NC_067709.1 · 114,012–115,541 bp · −
psaC · NC_067709.1 · 115,632–115,877 bp · −
ndhE · NC_067709.1 · 116,133–116,438 bp · −
ndhG · NC_067709.1 · 116,653–117,183 bp · −
ndhI · NC_067709.1 · 117,545–118,051 bp · −
ndhA · NC_067709.1 · 118,127–120,239 bp · −
ndhH · NC_067709.1 · 120,241–121,422 bp · −
rps15 · NC_067709.1 · 121,537–121,809 bp · −
ycf1 · NC_067709.1 · 122,253–127,802 bp · −
trnR-ACG · NC_067709.1 · 128,787–128,860 bp · −
rrn5 · NC_067709.1 · 129,104–129,224 bp · −
rrn4.5 · NC_067709.1 · 129,480–129,582 bp · −
rrn23 · NC_067709.1 · 129,681–132,491 bp · −
trnA-UGC · NC_067709.1 · 132,663–133,541 bp · −
trnI-GAU · NC_067709.1 · 133,606–134,624 bp · −
rrn16 · NC_067709.1 · 134,922–136,412 bp · −
trnV-GAC · NC_067709.1 · 136,639–136,710 bp · −
ycf15 · NC_067709.1 · 143,078–143,227 bp · −
ycf2 · NC_067709.1 · 143,417–150,265 bp · −
psbK · NC_067709.1 · 7,331–7,516 bp · +
psbI · NC_067709.1 · 7,907–8,017 bp · +
trnG-UCC · NC_067709.1 · 9,058–9,816 bp · +
trnR-UCU · NC_067709.1 · 10,001–10,072 bp · +
trnC-GCA · NC_067709.1 · 28,068–28,138 bp · +
petN · NC_067709.1 · 28,295–28,384 bp · +
trnT-GGU · NC_067709.1 · 30,994–31,065 bp · +
psbD · NC_067709.1 · 32,445–33,506 bp · +
psbC · NC_067709.1 · 33,454–34,875 bp · +
psbZ · NC_067709.1 · 35,546–35,734 bp · +
trnG-GCC · NC_067709.1 · 35,979–36,049 bp · +
trnS-GGA · NC_067709.1 · 44,935–45,021 bp · +
trnL-UAA · NC_067709.1 · 47,071–47,614 bp · +
trnF-GAA · NC_067709.1 · 47,906–47,978 bp · +
trnM-CAU · NC_067709.1 · 52,094–52,166 bp · +
rbcL · NC_067709.1 · 55,060–56,493 bp · +
accD · NC_067709.1 · 57,198–58,679 bp · +
psaI · NC_067709.1 · 59,371–59,481 bp · +
ycf4 · NC_067709.1 · 59,933–60,487 bp · +
cemA · NC_067709.1 · 61,007–61,696 bp · +
petA · NC_067709.1 · 61,911–62,873 bp · +
petL · NC_067709.1 · 65,571–65,666 bp · +
petG · NC_067709.1 · 65,841–65,954 bp · +
psaJ · NC_067709.1 · 66,676–66,810 bp · +
rpl33 · NC_067709.1 · 67,263–67,463 bp · +
rps18 · NC_067709.1 · 67,630–67,935 bp · +
rps12 · NC_067709.1 · 138,372–139,165 bp · +
psbB · NC_067709.1 · 71,902–73,428 bp · +
psbT · NC_067709.1 · 73,613–73,714 bp · +
psbH · NC_067709.1 · 74,017–74,235 bp · +
petB · NC_067709.1 · 74,370–75,734 bp · +
petD · NC_067709.1 · 75,923–77,115 bp · +
ycf2 · NC_067709.1 · 85,524–92,372 bp · +
ycf15 · NC_067709.1 · 92,562–92,711 bp · +
trnV-GAC · NC_067709.1 · 99,079–99,150 bp · +
rrn16 · NC_067709.1 · 99,377–100,867 bp · +
trnI-GAU · NC_067709.1 · 101,165–102,183 bp · +
trnA-UGC · NC_067709.1 · 102,248–103,126 bp · +
rrn23 · NC_067709.1 · 103,298–106,108 bp · +
rrn4.5 · NC_067709.1 · 106,207–106,309 bp · +
rrn5 · NC_067709.1 · 106,565–106,685 bp · +
trnR-ACG · NC_067709.1 · 106,929–107,002 bp · +
ycf1 · NC_067709.1 · 107,987–109,117 bp · +
rpl32 · NC_067709.1 · 111,718–111,888 bp · +
trnL-UAG · NC_067709.1 · 112,640–112,719 bp · +
ccsA · NC_067709.1 · 112,808–113,779 bp · +
trnN-GUU · NC_067709.1 · 128,144–128,215 bp · +
rps7 · NC_067709.1 · 139,219–139,686 bp · +
ndhB · NC_067709.1 · 139,957–142,164 bp · +
trnL-CAA · NC_067709.1 · 142,737–142,817 bp · +
trnI-CAU · NC_067709.1 · 150,354–150,427 bp · +
rpl23 · NC_067709.1 · 150,593–150,874 bp · +
rpl2 · NC_067709.1 · 150,893–152,371 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Isodon ramosissimus
ANNOTATED PLASTOME
NC_067709.1
152,473 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
ATP synthase
Ribosomal protein
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38118 76236 114355 152473 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK ON845_pgp086 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 13 87 75 Locate
psbA gene − 382 1440 1059 Locate
trnK-UUU gene − 1672 4242 2571 Locate
matK gene − 1987 3507 1521 Locate
ON845_pgp086 gene − 4771 5911 1141 Locate
trnQ-UUG gene − 6866 6937 72 Locate
psbK gene + 7331 7516 186 Locate
psbI gene + 7907 8017 111 Locate
trnS-GCU gene − 8173 8260 88 Locate
trnG-UCC gene + 9058 9816 759 Locate
trnR-UCU gene + 10001 10072 72 Locate
atpA gene − 10176 11699 1524 Locate
atpF gene − 11807 13052 1246 Locate
atpH gene − 13343 13588 246 Locate
atpI gene − 14588 15331 744 Locate
rps2 gene − 15557 16267 711 Locate
rpoC2 gene − 16481 20662 4182 Locate
rpoC1 gene − 20827 23658 2832 Locate
rpoB gene − 23685 26897 3213 Locate
trnC-GCA gene + 28068 28138 71 Locate
petN gene + 28295 28384 90 Locate
psbM gene − 29366 29470 105 Locate
trnD-GUC gene − 29985 30058 74 Locate
trnY-GUA gene − 30169 30252 84 Locate
trnE-UUC gene − 30330 30402 73 Locate
trnT-GGU gene + 30994 31065 72 Locate
psbD gene + 32445 33506 1062 Locate
psbC gene + 33454 34875 1422 Locate
trnS-UGA gene − 35113 35205 93 Locate
psbZ gene + 35546 35734 189 Locate
trnG-GCC gene + 35979 36049 71 Locate
trnfM-CAU gene − 36220 36293 74 Locate
rps14 gene − 36444 36746 303 Locate
psaB gene − 36869 39073 2205 Locate
psaA gene − 39099 41351 2253 Locate
ycf3 gene − 42120 44079 1960 Locate
trnS-GGA gene + 44935 45021 87 Locate
rps4 gene − 45313 45918 606 Locate
trnT-UGU gene − 46312 46384 73 Locate
trnL-UAA gene + 47071 47614 544 Locate
trnF-GAA gene + 47906 47978 73 Locate
ndhJ gene − 48633 49109 477 Locate
ndhK gene − 49220 49897 678 Locate
ndhC gene − 49949 50311 363 Locate
trnV-UAC gene − 51258 51913 656 Locate
trnM-CAU gene + 52094 52166 73 Locate
atpE gene − 52367 52768 402 Locate
atpB gene − 52765 54261 1497 Locate
rbcL gene + 55060 56493 1434 Locate
accD gene + 57198 58679 1482 Locate
psaI gene + 59371 59481 111 Locate
ycf4 gene + 59933 60487 555 Locate
cemA gene + 61007 61696 690 Locate
petA gene + 61911 62873 963 Locate
psbJ gene − 63901 64023 123 Locate
psbL gene − 64158 64274 117 Locate
psbF gene − 64298 64417 120 Locate
psbE gene − 64432 64683 252 Locate
petL gene + 65571 65666 96 Locate
petG gene + 65841 65954 114 Locate
trnW-CCA gene − 66077 66150 74 Locate
trnP-UGG gene − 66319 66392 74 Locate
psaJ gene + 66676 66810 135 Locate
rpl33 gene + 67263 67463 201 Locate
rps18 gene + 67630 67935 306 Locate
rpl20 gene − 68169 68555 387 Locate
rps12 gene − 69288 69401 114 Locate
clpP gene − 69519 71429 1911 Locate
psbB gene + 71902 73428 1527 Locate
psbT gene + 73613 73714 102 Locate
psbN gene − 73780 73911 132 Locate
psbH gene + 74017 74235 219 Locate
petB gene + 74370 75734 1365 Locate
petD gene + 75923 77115 1193 Locate
rpoA gene − 77292 78305 1014 Locate
rps11 gene − 78377 78793 417 Locate
rpl36 gene − 78909 79022 114 Locate
infA gene − 79118 79351 234 Locate
rps8 gene − 79477 79881 405 Locate
rpl14 gene − 80053 80421 369 Locate
rpl16 gene − 80555 81738 1184 Locate
rps3 gene − 81887 82549 663 Locate
rpl22 gene − 82534 83007 474 Locate
rps19 gene − 83072 83350 279 Locate
rpl2 gene − 83418 84896 1479 Locate
rpl23 gene − 84915 85196 282 Locate
trnI-CAU gene − 85362 85435 74 Locate
ycf2 gene + 85524 92372 6849 Locate
ycf15 gene + 92562 92711 150 Locate
trnL-CAA gene − 92972 93052 81 Locate
ndhB gene − 93625 95832 2208 Locate
rps7 gene − 96103 96570 468 Locate
rps12 gene − 96624 97417 794 Locate
trnV-GAC gene + 99079 99150 72 Locate
rrn16 gene + 99377 100867 1491 Locate
trnI-GAU gene + 101165 102183 1019 Locate
trnA-UGC gene + 102248 103126 879 Locate
rrn23 gene + 103298 106108 2811 Locate
rrn4.5 gene + 106207 106309 103 Locate
rrn5 gene + 106565 106685 121 Locate
trnR-ACG gene + 106929 107002 74 Locate
trnN-GUU gene − 107574 107645 72 Locate
ycf1 gene + 107987 109117 1131 Locate
ndhF gene − 109011 111242 2232 Locate
rpl32 gene + 111718 111888 171 Locate
trnL-UAG gene + 112640 112719 80 Locate
ccsA gene + 112808 113779 972 Locate
ndhD gene − 114012 115541 1530 Locate
psaC gene − 115632 115877 246 Locate
ndhE gene − 116133 116438 306 Locate
ndhG gene − 116653 117183 531 Locate
ndhI gene − 117545 118051 507 Locate
ndhA gene − 118127 120239 2113 Locate
ndhH gene − 120241 121422 1182 Locate
rps15 gene − 121537 121809 273 Locate
ycf1 gene − 122253 127802 5550 Locate
trnN-GUU gene + 128144 128215 72 Locate
trnR-ACG gene − 128787 128860 74 Locate
rrn5 gene − 129104 129224 121 Locate
rrn4.5 gene − 129480 129582 103 Locate
rrn23 gene − 129681 132491 2811 Locate
trnA-UGC gene − 132663 133541 879 Locate
trnI-GAU gene − 133606 134624 1019 Locate
rrn16 gene − 134922 136412 1491 Locate
trnV-GAC gene − 136639 136710 72 Locate
rps12 gene + 138372 139165 794 Locate
rps7 gene + 139219 139686 468 Locate
ndhB gene + 139957 142164 2208 Locate
trnL-CAA gene + 142737 142817 81 Locate
ycf15 gene − 143078 143227 150 Locate
ycf2 gene − 143417 150265 6849 Locate
trnI-CAU gene + 150354 150427 74 Locate
rpl23 gene + 150593 150874 282 Locate
rpl2 gene + 150893 152371 1479 Locate
Status Available
Accession NC_067709.1
Length 152,473 bp
GC content 37.5%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 16 Atp Synthase 6 Ribosomal Protein 25 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources