Isodon rosthornii chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · NC_067699.1 · 11–85 bp · −
psbA · NC_067699.1 · 397–1,455 bp · −
trnK-UUU · NC_067699.1 · 1,687–4,267 bp · −
matK · NC_067699.1 · 2,007–3,527 bp · −
OOC24_pgp086 · NC_067699.1 · 4,794–5,939 bp · −
trnQ-UUG · NC_067699.1 · 6,885–6,956 bp · −
trnS-GCU · NC_067699.1 · 8,190–8,277 bp · −
atpA · NC_067699.1 · 10,186–11,709 bp · −
atpF · NC_067699.1 · 11,818–13,064 bp · −
atpH · NC_067699.1 · 13,356–13,601 bp · −
atpI · NC_067699.1 · 14,602–15,345 bp · −
rps2 · NC_067699.1 · 15,576–16,286 bp · −
rpoC2 · NC_067699.1 · 16,504–20,685 bp · −
rpoC1 · NC_067699.1 · 20,850–23,683 bp · −
rpoB · NC_067699.1 · 23,710–26,922 bp · −
psbM · NC_067699.1 · 28,960–29,064 bp · −
trnD-GUC · NC_067699.1 · 29,575–29,648 bp · −
trnY-GUA · NC_067699.1 · 29,759–29,842 bp · −
trnE-UUC · NC_067699.1 · 29,920–29,992 bp · −
trnS-UGA · NC_067699.1 · 34,660–34,752 bp · −
trnfM-CAU · NC_067699.1 · 35,785–35,858 bp · −
rps14 · NC_067699.1 · 36,004–36,306 bp · −
psaB · NC_067699.1 · 36,429–38,633 bp · −
psaA · NC_067699.1 · 38,659–40,911 bp · −
ycf3 · NC_067699.1 · 41,694–43,641 bp · −
rps4 · NC_067699.1 · 44,886–45,491 bp · −
trnT-UGU · NC_067699.1 · 45,916–45,988 bp · −
ndhJ · NC_067699.1 · 48,279–48,755 bp · −
ndhK · NC_067699.1 · 48,866–49,543 bp · −
ndhC · NC_067699.1 · 49,595–49,957 bp · −
trnV-UAC · NC_067699.1 · 50,914–51,569 bp · −
atpE · NC_067699.1 · 52,023–52,424 bp · −
atpB · NC_067699.1 · 52,421–53,917 bp · −
psbJ · NC_067699.1 · 63,635–63,757 bp · −
psbL · NC_067699.1 · 63,892–64,008 bp · −
psbF · NC_067699.1 · 64,032–64,151 bp · −
psbE · NC_067699.1 · 64,166–64,417 bp · −
trnW-CCA · NC_067699.1 · 65,815–65,888 bp · −
trnP-UGG · NC_067699.1 · 66,057–66,130 bp · −
rpl20 · NC_067699.1 · 67,977–68,363 bp · −
rps12 · NC_067699.1 · 69,095–69,208 bp · −
rps12 · NC_067699.1 · 96,523–97,315 bp · −
clpP · NC_067699.1 · 69,327–71,263 bp · −
psbN · NC_067699.1 · 73,614–73,745 bp · −
rpoA · NC_067699.1 · 77,119–78,126 bp · −
rps11 · NC_067699.1 · 78,198–78,614 bp · −
rpl36 · NC_067699.1 · 78,730–78,843 bp · −
infA · NC_067699.1 · 78,939–79,172 bp · −
rps8 · NC_067699.1 · 79,299–79,703 bp · −
rpl14 · NC_067699.1 · 79,886–80,254 bp · −
rpl16 · NC_067699.1 · 80,388–81,655 bp · −
rps3 · NC_067699.1 · 81,799–82,461 bp · −
rpl22 · NC_067699.1 · 82,446–82,919 bp · −
rps19 · NC_067699.1 · 82,984–83,262 bp · −
rpl2 · NC_067699.1 · 83,330–84,808 bp · −
rpl23 · NC_067699.1 · 84,827–85,108 bp · −
trnI-CAU · NC_067699.1 · 85,274–85,347 bp · −
trnL-CAA · NC_067699.1 · 92,872–92,952 bp · −
ndhB · NC_067699.1 · 93,524–95,731 bp · −
rps7 · NC_067699.1 · 96,002–96,469 bp · −
trnN-GUU · NC_067699.1 · 107,467–107,538 bp · −
ndhF · NC_067699.1 · 108,904–111,135 bp · −
ndhD · NC_067699.1 · 113,911–115,440 bp · −
psaC · NC_067699.1 · 115,531–115,776 bp · −
ndhE · NC_067699.1 · 116,032–116,337 bp · −
ndhG · NC_067699.1 · 116,546–117,076 bp · −
ndhI · NC_067699.1 · 117,435–117,941 bp · −
ndhA · NC_067699.1 · 118,022–120,140 bp · −
ndhH · NC_067699.1 · 120,142–121,323 bp · −
rps15 · NC_067699.1 · 121,438–121,710 bp · −
ycf1 · NC_067699.1 · 122,140–127,662 bp · −
trnR-ACG · NC_067699.1 · 128,642–128,715 bp · −
rrn5 · NC_067699.1 · 128,959–129,079 bp · −
rrn4.5 · NC_067699.1 · 129,335–129,437 bp · −
rrn23 · NC_067699.1 · 129,536–132,346 bp · −
trnA-UGC · NC_067699.1 · 132,518–133,396 bp · −
trnI-GAU · NC_067699.1 · 133,461–134,479 bp · −
rrn16 · NC_067699.1 · 134,777–136,267 bp · −
trnV-GAC · NC_067699.1 · 136,494–136,565 bp · −
ycf15 · NC_067699.1 · 142,931–143,080 bp · −
ycf2 · NC_067699.1 · 143,270–150,100 bp · −
psbK · NC_067699.1 · 7,350–7,535 bp · +
psbI · NC_067699.1 · 7,923–8,033 bp · +
trnG-UCC · NC_067699.1 · 9,061–9,820 bp · +
trnR-UCU · NC_067699.1 · 10,011–10,082 bp · +
trnC-GCA · NC_067699.1 · 28,111–28,181 bp · +
petN · NC_067699.1 · 28,344–28,433 bp · +
trnT-GGU · NC_067699.1 · 30,602–30,673 bp · +
psbD · NC_067699.1 · 31,992–33,053 bp · +
psbC · NC_067699.1 · 33,001–34,422 bp · +
psbZ · NC_067699.1 · 35,093–35,281 bp · +
trnG-GCC · NC_067699.1 · 35,526–35,596 bp · +
trnS-GGA · NC_067699.1 · 44,503–44,589 bp · +
trnL-UAA · NC_067699.1 · 46,681–47,245 bp · +
trnF-GAA · NC_067699.1 · 47,539–47,611 bp · +
trnM-CAU · NC_067699.1 · 51,750–51,822 bp · +
rbcL · NC_067699.1 · 54,708–56,141 bp · +
accD · NC_067699.1 · 56,846–58,327 bp · +
psaI · NC_067699.1 · 59,028–59,138 bp · +
ycf4 · NC_067699.1 · 59,586–60,140 bp · +
cemA · NC_067699.1 · 60,731–61,420 bp · +
petA · NC_067699.1 · 61,635–62,597 bp · +
petL · NC_067699.1 · 65,309–65,404 bp · +
petG · NC_067699.1 · 65,579–65,692 bp · +
psaJ · NC_067699.1 · 66,412–66,546 bp · +
rpl33 · NC_067699.1 · 67,070–67,270 bp · +
rps18 · NC_067699.1 · 67,437–67,742 bp · +
rps12 · NC_067699.1 · 138,227–139,019 bp · +
psbB · NC_067699.1 · 71,736–73,262 bp · +
psbT · NC_067699.1 · 73,447–73,548 bp · +
psbH · NC_067699.1 · 73,851–74,069 bp · +
petB · NC_067699.1 · 74,195–75,561 bp · +
petD · NC_067699.1 · 75,750–76,942 bp · +
ycf2 · NC_067699.1 · 85,442–92,272 bp · +
ycf15 · NC_067699.1 · 92,462–92,611 bp · +
trnV-GAC · NC_067699.1 · 98,977–99,048 bp · +
rrn16 · NC_067699.1 · 99,275–100,765 bp · +
trnI-GAU · NC_067699.1 · 101,063–102,081 bp · +
trnA-UGC · NC_067699.1 · 102,146–103,024 bp · +
rrn23 · NC_067699.1 · 103,196–106,006 bp · +
rrn4.5 · NC_067699.1 · 106,105–106,207 bp · +
rrn5 · NC_067699.1 · 106,463–106,583 bp · +
trnR-ACG · NC_067699.1 · 106,827–106,900 bp · +
ycf1 · NC_067699.1 · 107,880–109,010 bp · +
rpl32 · NC_067699.1 · 111,604–111,774 bp · +
trnL-UAG · NC_067699.1 · 112,540–112,619 bp · +
ccsA · NC_067699.1 · 112,708–113,679 bp · +
trnN-GUU · NC_067699.1 · 128,004–128,075 bp · +
rps7 · NC_067699.1 · 139,073–139,540 bp · +
ndhB · NC_067699.1 · 139,811–142,018 bp · +
trnL-CAA · NC_067699.1 · 142,590–142,670 bp · +
trnI-CAU · NC_067699.1 · 150,195–150,268 bp · +
rpl23 · NC_067699.1 · 150,434–150,715 bp · +
rpl2 · NC_067699.1 · 150,734–152,212 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Isodon rosthornii
ANNOTATED PLASTOME
NC_067699.1
152,322 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
ATP synthase
Ribosomal protein
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38080 76161 114242 152322 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK OOC24_pgp086 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 11 85 75 Locate
psbA gene − 397 1455 1059 Locate
trnK-UUU gene − 1687 4267 2581 Locate
matK gene − 2007 3527 1521 Locate
OOC24_pgp086 gene − 4794 5939 1146 Locate
trnQ-UUG gene − 6885 6956 72 Locate
psbK gene + 7350 7535 186 Locate
psbI gene + 7923 8033 111 Locate
trnS-GCU gene − 8190 8277 88 Locate
trnG-UCC gene + 9061 9820 760 Locate
trnR-UCU gene + 10011 10082 72 Locate
atpA gene − 10186 11709 1524 Locate
atpF gene − 11818 13064 1247 Locate
atpH gene − 13356 13601 246 Locate
atpI gene − 14602 15345 744 Locate
rps2 gene − 15576 16286 711 Locate
rpoC2 gene − 16504 20685 4182 Locate
rpoC1 gene − 20850 23683 2834 Locate
rpoB gene − 23710 26922 3213 Locate
trnC-GCA gene + 28111 28181 71 Locate
petN gene + 28344 28433 90 Locate
psbM gene − 28960 29064 105 Locate
trnD-GUC gene − 29575 29648 74 Locate
trnY-GUA gene − 29759 29842 84 Locate
trnE-UUC gene − 29920 29992 73 Locate
trnT-GGU gene + 30602 30673 72 Locate
psbD gene + 31992 33053 1062 Locate
psbC gene + 33001 34422 1422 Locate
trnS-UGA gene − 34660 34752 93 Locate
psbZ gene + 35093 35281 189 Locate
trnG-GCC gene + 35526 35596 71 Locate
trnfM-CAU gene − 35785 35858 74 Locate
rps14 gene − 36004 36306 303 Locate
psaB gene − 36429 38633 2205 Locate
psaA gene − 38659 40911 2253 Locate
ycf3 gene − 41694 43641 1948 Locate
trnS-GGA gene + 44503 44589 87 Locate
rps4 gene − 44886 45491 606 Locate
trnT-UGU gene − 45916 45988 73 Locate
trnL-UAA gene + 46681 47245 565 Locate
trnF-GAA gene + 47539 47611 73 Locate
ndhJ gene − 48279 48755 477 Locate
ndhK gene − 48866 49543 678 Locate
ndhC gene − 49595 49957 363 Locate
trnV-UAC gene − 50914 51569 656 Locate
trnM-CAU gene + 51750 51822 73 Locate
atpE gene − 52023 52424 402 Locate
atpB gene − 52421 53917 1497 Locate
rbcL gene + 54708 56141 1434 Locate
accD gene + 56846 58327 1482 Locate
psaI gene + 59028 59138 111 Locate
ycf4 gene + 59586 60140 555 Locate
cemA gene + 60731 61420 690 Locate
petA gene + 61635 62597 963 Locate
psbJ gene − 63635 63757 123 Locate
psbL gene − 63892 64008 117 Locate
psbF gene − 64032 64151 120 Locate
psbE gene − 64166 64417 252 Locate
petL gene + 65309 65404 96 Locate
petG gene + 65579 65692 114 Locate
trnW-CCA gene − 65815 65888 74 Locate
trnP-UGG gene − 66057 66130 74 Locate
psaJ gene + 66412 66546 135 Locate
rpl33 gene + 67070 67270 201 Locate
rps18 gene + 67437 67742 306 Locate
rpl20 gene − 67977 68363 387 Locate
rps12 gene − 69095 69208 114 Locate
clpP gene − 69327 71263 1937 Locate
psbB gene + 71736 73262 1527 Locate
psbT gene + 73447 73548 102 Locate
psbN gene − 73614 73745 132 Locate
psbH gene + 73851 74069 219 Locate
petB gene + 74195 75561 1367 Locate
petD gene + 75750 76942 1193 Locate
rpoA gene − 77119 78126 1008 Locate
rps11 gene − 78198 78614 417 Locate
rpl36 gene − 78730 78843 114 Locate
infA gene − 78939 79172 234 Locate
rps8 gene − 79299 79703 405 Locate
rpl14 gene − 79886 80254 369 Locate
rpl16 gene − 80388 81655 1268 Locate
rps3 gene − 81799 82461 663 Locate
rpl22 gene − 82446 82919 474 Locate
rps19 gene − 82984 83262 279 Locate
rpl2 gene − 83330 84808 1479 Locate
rpl23 gene − 84827 85108 282 Locate
trnI-CAU gene − 85274 85347 74 Locate
ycf2 gene + 85442 92272 6831 Locate
ycf15 gene + 92462 92611 150 Locate
trnL-CAA gene − 92872 92952 81 Locate
ndhB gene − 93524 95731 2208 Locate
rps7 gene − 96002 96469 468 Locate
rps12 gene − 96523 97315 793 Locate
trnV-GAC gene + 98977 99048 72 Locate
rrn16 gene + 99275 100765 1491 Locate
trnI-GAU gene + 101063 102081 1019 Locate
trnA-UGC gene + 102146 103024 879 Locate
rrn23 gene + 103196 106006 2811 Locate
rrn4.5 gene + 106105 106207 103 Locate
rrn5 gene + 106463 106583 121 Locate
trnR-ACG gene + 106827 106900 74 Locate
trnN-GUU gene − 107467 107538 72 Locate
ycf1 gene + 107880 109010 1131 Locate
ndhF gene − 108904 111135 2232 Locate
rpl32 gene + 111604 111774 171 Locate
trnL-UAG gene + 112540 112619 80 Locate
ccsA gene + 112708 113679 972 Locate
ndhD gene − 113911 115440 1530 Locate
psaC gene − 115531 115776 246 Locate
ndhE gene − 116032 116337 306 Locate
ndhG gene − 116546 117076 531 Locate
ndhI gene − 117435 117941 507 Locate
ndhA gene − 118022 120140 2119 Locate
ndhH gene − 120142 121323 1182 Locate
rps15 gene − 121438 121710 273 Locate
ycf1 gene − 122140 127662 5523 Locate
trnN-GUU gene + 128004 128075 72 Locate
trnR-ACG gene − 128642 128715 74 Locate
rrn5 gene − 128959 129079 121 Locate
rrn4.5 gene − 129335 129437 103 Locate
rrn23 gene − 129536 132346 2811 Locate
trnA-UGC gene − 132518 133396 879 Locate
trnI-GAU gene − 133461 134479 1019 Locate
rrn16 gene − 134777 136267 1491 Locate
trnV-GAC gene − 136494 136565 72 Locate
rps12 gene + 138227 139019 793 Locate
rps7 gene + 139073 139540 468 Locate
ndhB gene + 139811 142018 2208 Locate
trnL-CAA gene + 142590 142670 81 Locate
ycf15 gene − 142931 143080 150 Locate
ycf2 gene − 143270 150100 6831 Locate
trnI-CAU gene + 150195 150268 74 Locate
rpl23 gene + 150434 150715 282 Locate
rpl2 gene + 150734 152212 1479 Locate
Status Available
Accession NC_067699.1
Length 152,322 bp
GC content 37.6%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 16 Atp Synthase 6 Ribosomal Protein 25 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources