Isodon rugosiformis chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · NC_067679.1 · 11–85 bp · −
psbA · NC_067679.1 · 388–1,446 bp · −
trnK-UUU · NC_067679.1 · 1,678–4,258 bp · −
matK · NC_067679.1 · 1,998–3,518 bp · −
OOC23_pgp086 · NC_067679.1 · 4,785–5,930 bp · −
trnQ-UUG · NC_067679.1 · 6,875–6,946 bp · −
trnS-GCU · NC_067679.1 · 8,179–8,266 bp · −
atpA · NC_067679.1 · 10,161–11,684 bp · −
atpF · NC_067679.1 · 11,789–13,034 bp · −
atpH · NC_067679.1 · 13,326–13,571 bp · −
atpI · NC_067679.1 · 14,572–15,315 bp · −
rps2 · NC_067679.1 · 15,541–16,251 bp · −
rpoC2 · NC_067679.1 · 16,468–20,649 bp · −
rpoC1 · NC_067679.1 · 20,814–23,647 bp · −
rpoB · NC_067679.1 · 23,674–26,886 bp · −
psbM · NC_067679.1 · 29,383–29,487 bp · −
trnD-GUC · NC_067679.1 · 30,006–30,079 bp · −
trnY-GUA · NC_067679.1 · 30,190–30,273 bp · −
trnE-UUC · NC_067679.1 · 30,352–30,424 bp · −
trnS-UGA · NC_067679.1 · 35,059–35,151 bp · −
trnfM-CAU · NC_067679.1 · 36,184–36,257 bp · −
rps14 · NC_067679.1 · 36,403–36,705 bp · −
psaB · NC_067679.1 · 36,828–39,032 bp · −
psaA · NC_067679.1 · 39,058–41,310 bp · −
ycf3 · NC_067679.1 · 42,084–44,030 bp · −
rps4 · NC_067679.1 · 45,277–45,882 bp · −
trnT-UGU · NC_067679.1 · 46,307–46,379 bp · −
ndhJ · NC_067679.1 · 48,663–49,139 bp · −
ndhK · NC_067679.1 · 49,286–49,927 bp · −
ndhC · NC_067679.1 · 49,979–50,341 bp · −
trnV-UAC · NC_067679.1 · 51,298–51,953 bp · −
atpE · NC_067679.1 · 52,407–52,808 bp · −
atpB · NC_067679.1 · 52,805–54,301 bp · −
psbJ · NC_067679.1 · 64,018–64,140 bp · −
psbL · NC_067679.1 · 64,275–64,391 bp · −
psbF · NC_067679.1 · 64,415–64,534 bp · −
psbE · NC_067679.1 · 64,549–64,800 bp · −
trnW-CCA · NC_067679.1 · 66,199–66,272 bp · −
trnP-UGG · NC_067679.1 · 66,441–66,514 bp · −
rpl20 · NC_067679.1 · 68,306–68,692 bp · −
rps12 · NC_067679.1 · 69,425–69,538 bp · −
rps12 · NC_067679.1 · 96,833–97,625 bp · −
clpP · NC_067679.1 · 69,657–71,572 bp · −
psbN · NC_067679.1 · 73,922–74,053 bp · −
rpoA · NC_067679.1 · 77,428–78,435 bp · −
rps11 · NC_067679.1 · 78,507–78,923 bp · −
rpl36 · NC_067679.1 · 79,039–79,152 bp · −
infA · NC_067679.1 · 79,248–79,481 bp · −
rps8 · NC_067679.1 · 79,609–80,013 bp · −
rpl14 · NC_067679.1 · 80,196–80,564 bp · −
rpl16 · NC_067679.1 · 80,698–81,965 bp · −
rps3 · NC_067679.1 · 82,109–82,771 bp · −
rpl22 · NC_067679.1 · 82,756–83,229 bp · −
rps19 · NC_067679.1 · 83,294–83,572 bp · −
rpl2 · NC_067679.1 · 83,640–85,118 bp · −
rpl23 · NC_067679.1 · 85,137–85,418 bp · −
trnI-CAU · NC_067679.1 · 85,584–85,657 bp · −
trnL-CAA · NC_067679.1 · 93,182–93,262 bp · −
ndhB · NC_067679.1 · 93,834–96,041 bp · −
rps7 · NC_067679.1 · 96,312–96,779 bp · −
trnN-GUU · NC_067679.1 · 107,777–107,848 bp · −
ndhF · NC_067679.1 · 109,214–111,445 bp · −
ndhD · NC_067679.1 · 114,228–115,757 bp · −
psaC · NC_067679.1 · 115,848–116,093 bp · −
ndhE · NC_067679.1 · 116,349–116,654 bp · −
ndhG · NC_067679.1 · 116,869–117,399 bp · −
ndhI · NC_067679.1 · 117,758–118,264 bp · −
ndhA · NC_067679.1 · 118,345–120,468 bp · −
ndhH · NC_067679.1 · 120,470–121,651 bp · −
rps15 · NC_067679.1 · 121,766–122,038 bp · −
ycf1 · NC_067679.1 · 122,468–127,990 bp · −
trnR-ACG · NC_067679.1 · 128,970–129,043 bp · −
rrn5 · NC_067679.1 · 129,287–129,407 bp · −
rrn4.5 · NC_067679.1 · 129,663–129,765 bp · −
rrn23 · NC_067679.1 · 129,864–132,674 bp · −
trnA-UGC · NC_067679.1 · 132,846–133,724 bp · −
trnI-GAU · NC_067679.1 · 133,789–134,807 bp · −
rrn16 · NC_067679.1 · 135,105–136,595 bp · −
trnV-GAC · NC_067679.1 · 136,822–136,893 bp · −
ycf15 · NC_067679.1 · 143,259–143,408 bp · −
ycf2 · NC_067679.1 · 143,598–150,428 bp · −
psbK · NC_067679.1 · 7,340–7,525 bp · +
psbI · NC_067679.1 · 7,913–8,023 bp · +
trnG-UCC · NC_067679.1 · 9,036–9,795 bp · +
trnR-UCU · NC_067679.1 · 9,986–10,057 bp · +
trnC-GCA · NC_067679.1 · 28,069–28,139 bp · +
petN · NC_067679.1 · 28,302–28,391 bp · +
trnT-GGU · NC_067679.1 · 31,004–31,075 bp · +
psbD · NC_067679.1 · 32,393–33,454 bp · +
psbC · NC_067679.1 · 33,402–34,823 bp · +
psbZ · NC_067679.1 · 35,492–35,680 bp · +
trnG-GCC · NC_067679.1 · 35,925–35,995 bp · +
trnS-GGA · NC_067679.1 · 44,894–44,980 bp · +
trnL-UAA · NC_067679.1 · 47,066–47,630 bp · +
trnF-GAA · NC_067679.1 · 47,923–47,995 bp · +
trnM-CAU · NC_067679.1 · 52,134–52,206 bp · +
rbcL · NC_067679.1 · 55,091–56,524 bp · +
accD · NC_067679.1 · 57,229–58,710 bp · +
psaI · NC_067679.1 · 59,411–59,521 bp · +
ycf4 · NC_067679.1 · 59,969–60,523 bp · +
cemA · NC_067679.1 · 61,114–61,803 bp · +
petA · NC_067679.1 · 62,018–62,980 bp · +
petL · NC_067679.1 · 65,693–65,788 bp · +
petG · NC_067679.1 · 65,963–66,076 bp · +
psaJ · NC_067679.1 · 66,801–66,935 bp · +
rpl33 · NC_067679.1 · 67,398–67,598 bp · +
rps18 · NC_067679.1 · 67,765–68,070 bp · +
rps12 · NC_067679.1 · 138,555–139,347 bp · +
psbB · NC_067679.1 · 72,045–73,571 bp · +
psbT · NC_067679.1 · 73,755–73,856 bp · +
psbH · NC_067679.1 · 74,159–74,377 bp · +
petB · NC_067679.1 · 74,503–75,870 bp · +
petD · NC_067679.1 · 76,059–77,251 bp · +
ycf2 · NC_067679.1 · 85,752–92,582 bp · +
ycf15 · NC_067679.1 · 92,772–92,921 bp · +
trnV-GAC · NC_067679.1 · 99,287–99,358 bp · +
rrn16 · NC_067679.1 · 99,585–101,075 bp · +
trnI-GAU · NC_067679.1 · 101,373–102,391 bp · +
trnA-UGC · NC_067679.1 · 102,456–103,334 bp · +
rrn23 · NC_067679.1 · 103,506–106,316 bp · +
rrn4.5 · NC_067679.1 · 106,415–106,517 bp · +
rrn5 · NC_067679.1 · 106,773–106,893 bp · +
trnR-ACG · NC_067679.1 · 107,137–107,210 bp · +
ycf1 · NC_067679.1 · 108,190–109,320 bp · +
rpl32 · NC_067679.1 · 111,921–112,091 bp · +
trnL-UAG · NC_067679.1 · 112,856–112,935 bp · +
ccsA · NC_067679.1 · 113,024–113,995 bp · +
trnN-GUU · NC_067679.1 · 128,332–128,403 bp · +
rps7 · NC_067679.1 · 139,401–139,868 bp · +
ndhB · NC_067679.1 · 140,139–142,346 bp · +
trnL-CAA · NC_067679.1 · 142,918–142,998 bp · +
trnI-CAU · NC_067679.1 · 150,523–150,596 bp · +
rpl23 · NC_067679.1 · 150,762–151,043 bp · +
rpl2 · NC_067679.1 · 151,062–152,540 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Isodon rugosiformis
ANNOTATED PLASTOME
NC_067679.1
152,650 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
ATP synthase
Ribosomal protein
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38162 76325 114488 152650 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK OOC23_pgp086 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 11 85 75 Locate
psbA gene − 388 1446 1059 Locate
trnK-UUU gene − 1678 4258 2581 Locate
matK gene − 1998 3518 1521 Locate
OOC23_pgp086 gene − 4785 5930 1146 Locate
trnQ-UUG gene − 6875 6946 72 Locate
psbK gene + 7340 7525 186 Locate
psbI gene + 7913 8023 111 Locate
trnS-GCU gene − 8179 8266 88 Locate
trnG-UCC gene + 9036 9795 760 Locate
trnR-UCU gene + 9986 10057 72 Locate
atpA gene − 10161 11684 1524 Locate
atpF gene − 11789 13034 1246 Locate
atpH gene − 13326 13571 246 Locate
atpI gene − 14572 15315 744 Locate
rps2 gene − 15541 16251 711 Locate
rpoC2 gene − 16468 20649 4182 Locate
rpoC1 gene − 20814 23647 2834 Locate
rpoB gene − 23674 26886 3213 Locate
trnC-GCA gene + 28069 28139 71 Locate
petN gene + 28302 28391 90 Locate
psbM gene − 29383 29487 105 Locate
trnD-GUC gene − 30006 30079 74 Locate
trnY-GUA gene − 30190 30273 84 Locate
trnE-UUC gene − 30352 30424 73 Locate
trnT-GGU gene + 31004 31075 72 Locate
psbD gene + 32393 33454 1062 Locate
psbC gene + 33402 34823 1422 Locate
trnS-UGA gene − 35059 35151 93 Locate
psbZ gene + 35492 35680 189 Locate
trnG-GCC gene + 35925 35995 71 Locate
trnfM-CAU gene − 36184 36257 74 Locate
rps14 gene − 36403 36705 303 Locate
psaB gene − 36828 39032 2205 Locate
psaA gene − 39058 41310 2253 Locate
ycf3 gene − 42084 44030 1947 Locate
trnS-GGA gene + 44894 44980 87 Locate
rps4 gene − 45277 45882 606 Locate
trnT-UGU gene − 46307 46379 73 Locate
trnL-UAA gene + 47066 47630 565 Locate
trnF-GAA gene + 47923 47995 73 Locate
ndhJ gene − 48663 49139 477 Locate
ndhK gene − 49286 49927 642 Locate
ndhC gene − 49979 50341 363 Locate
trnV-UAC gene − 51298 51953 656 Locate
trnM-CAU gene + 52134 52206 73 Locate
atpE gene − 52407 52808 402 Locate
atpB gene − 52805 54301 1497 Locate
rbcL gene + 55091 56524 1434 Locate
accD gene + 57229 58710 1482 Locate
psaI gene + 59411 59521 111 Locate
ycf4 gene + 59969 60523 555 Locate
cemA gene + 61114 61803 690 Locate
petA gene + 62018 62980 963 Locate
psbJ gene − 64018 64140 123 Locate
psbL gene − 64275 64391 117 Locate
psbF gene − 64415 64534 120 Locate
psbE gene − 64549 64800 252 Locate
petL gene + 65693 65788 96 Locate
petG gene + 65963 66076 114 Locate
trnW-CCA gene − 66199 66272 74 Locate
trnP-UGG gene − 66441 66514 74 Locate
psaJ gene + 66801 66935 135 Locate
rpl33 gene + 67398 67598 201 Locate
rps18 gene + 67765 68070 306 Locate
rpl20 gene − 68306 68692 387 Locate
rps12 gene − 69425 69538 114 Locate
clpP gene − 69657 71572 1916 Locate
psbB gene + 72045 73571 1527 Locate
psbT gene + 73755 73856 102 Locate
psbN gene − 73922 74053 132 Locate
psbH gene + 74159 74377 219 Locate
petB gene + 74503 75870 1368 Locate
petD gene + 76059 77251 1193 Locate
rpoA gene − 77428 78435 1008 Locate
rps11 gene − 78507 78923 417 Locate
rpl36 gene − 79039 79152 114 Locate
infA gene − 79248 79481 234 Locate
rps8 gene − 79609 80013 405 Locate
rpl14 gene − 80196 80564 369 Locate
rpl16 gene − 80698 81965 1268 Locate
rps3 gene − 82109 82771 663 Locate
rpl22 gene − 82756 83229 474 Locate
rps19 gene − 83294 83572 279 Locate
rpl2 gene − 83640 85118 1479 Locate
rpl23 gene − 85137 85418 282 Locate
trnI-CAU gene − 85584 85657 74 Locate
ycf2 gene + 85752 92582 6831 Locate
ycf15 gene + 92772 92921 150 Locate
trnL-CAA gene − 93182 93262 81 Locate
ndhB gene − 93834 96041 2208 Locate
rps7 gene − 96312 96779 468 Locate
rps12 gene − 96833 97625 793 Locate
trnV-GAC gene + 99287 99358 72 Locate
rrn16 gene + 99585 101075 1491 Locate
trnI-GAU gene + 101373 102391 1019 Locate
trnA-UGC gene + 102456 103334 879 Locate
rrn23 gene + 103506 106316 2811 Locate
rrn4.5 gene + 106415 106517 103 Locate
rrn5 gene + 106773 106893 121 Locate
trnR-ACG gene + 107137 107210 74 Locate
trnN-GUU gene − 107777 107848 72 Locate
ycf1 gene + 108190 109320 1131 Locate
ndhF gene − 109214 111445 2232 Locate
rpl32 gene + 111921 112091 171 Locate
trnL-UAG gene + 112856 112935 80 Locate
ccsA gene + 113024 113995 972 Locate
ndhD gene − 114228 115757 1530 Locate
psaC gene − 115848 116093 246 Locate
ndhE gene − 116349 116654 306 Locate
ndhG gene − 116869 117399 531 Locate
ndhI gene − 117758 118264 507 Locate
ndhA gene − 118345 120468 2124 Locate
ndhH gene − 120470 121651 1182 Locate
rps15 gene − 121766 122038 273 Locate
ycf1 gene − 122468 127990 5523 Locate
trnN-GUU gene + 128332 128403 72 Locate
trnR-ACG gene − 128970 129043 74 Locate
rrn5 gene − 129287 129407 121 Locate
rrn4.5 gene − 129663 129765 103 Locate
rrn23 gene − 129864 132674 2811 Locate
trnA-UGC gene − 132846 133724 879 Locate
trnI-GAU gene − 133789 134807 1019 Locate
rrn16 gene − 135105 136595 1491 Locate
trnV-GAC gene − 136822 136893 72 Locate
rps12 gene + 138555 139347 793 Locate
rps7 gene + 139401 139868 468 Locate
ndhB gene + 140139 142346 2208 Locate
trnL-CAA gene + 142918 142998 81 Locate
ycf15 gene − 143259 143408 150 Locate
ycf2 gene − 143598 150428 6831 Locate
trnI-CAU gene + 150523 150596 74 Locate
rpl23 gene + 150762 151043 282 Locate
rpl2 gene + 151062 152540 1479 Locate
Status Available
Accession NC_067679.1
Length 152,650 bp
GC content 37.6%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 16 Atp Synthase 6 Ribosomal Protein 25 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources