Isodon rugosus chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · NC_067680.1 · 11–85 bp · −
psbA · NC_067680.1 · 388–1,446 bp · −
trnK-UUU · NC_067680.1 · 1,678–4,258 bp · −
matK · NC_067680.1 · 1,998–3,518 bp · −
ON946_pgp086 · NC_067680.1 · 4,784–5,929 bp · −
trnQ-UUG · NC_067680.1 · 6,873–6,944 bp · −
trnS-GCU · NC_067680.1 · 8,176–8,263 bp · −
atpA · NC_067680.1 · 10,158–11,681 bp · −
atpF · NC_067680.1 · 11,792–13,037 bp · −
atpH · NC_067680.1 · 13,329–13,574 bp · −
atpI · NC_067680.1 · 14,575–15,318 bp · −
rps2 · NC_067680.1 · 15,544–16,254 bp · −
rpoC2 · NC_067680.1 · 16,471–20,652 bp · −
rpoC1 · NC_067680.1 · 20,817–23,650 bp · −
rpoB · NC_067680.1 · 23,677–26,889 bp · −
psbM · NC_067680.1 · 29,386–29,490 bp · −
trnD-GUC · NC_067680.1 · 30,009–30,082 bp · −
trnY-GUA · NC_067680.1 · 30,193–30,276 bp · −
trnE-UUC · NC_067680.1 · 30,354–30,426 bp · −
trnS-UGA · NC_067680.1 · 35,091–35,183 bp · −
trnfM-CAU · NC_067680.1 · 36,217–36,290 bp · −
rps14 · NC_067680.1 · 36,436–36,738 bp · −
psaB · NC_067680.1 · 36,861–39,065 bp · −
psaA · NC_067680.1 · 39,091–41,343 bp · −
ycf3 · NC_067680.1 · 42,111–44,057 bp · −
rps4 · NC_067680.1 · 45,304–45,909 bp · −
trnT-UGU · NC_067680.1 · 46,333–46,405 bp · −
ndhJ · NC_067680.1 · 48,689–49,165 bp · −
ndhK · NC_067680.1 · 49,312–49,953 bp · −
ndhC · NC_067680.1 · 50,005–50,367 bp · −
trnV-UAC · NC_067680.1 · 51,324–51,979 bp · −
atpE · NC_067680.1 · 52,433–52,834 bp · −
atpB · NC_067680.1 · 52,831–54,327 bp · −
psbJ · NC_067680.1 · 64,044–64,166 bp · −
psbL · NC_067680.1 · 64,301–64,417 bp · −
psbF · NC_067680.1 · 64,441–64,560 bp · −
psbE · NC_067680.1 · 64,575–64,826 bp · −
trnW-CCA · NC_067680.1 · 66,225–66,298 bp · −
trnP-UGG · NC_067680.1 · 66,467–66,540 bp · −
rpl20 · NC_067680.1 · 68,332–68,718 bp · −
rps12 · NC_067680.1 · 69,452–69,565 bp · −
rps12 · NC_067680.1 · 96,859–97,651 bp · −
clpP · NC_067680.1 · 69,684–71,599 bp · −
psbN · NC_067680.1 · 73,948–74,079 bp · −
rpoA · NC_067680.1 · 77,454–78,461 bp · −
rps11 · NC_067680.1 · 78,533–78,949 bp · −
rpl36 · NC_067680.1 · 79,065–79,178 bp · −
infA · NC_067680.1 · 79,274–79,507 bp · −
rps8 · NC_067680.1 · 79,634–80,038 bp · −
rpl14 · NC_067680.1 · 80,221–80,589 bp · −
rpl16 · NC_067680.1 · 80,723–81,990 bp · −
rps3 · NC_067680.1 · 82,134–82,796 bp · −
rpl22 · NC_067680.1 · 82,781–83,254 bp · −
rps19 · NC_067680.1 · 83,319–83,597 bp · −
rpl2 · NC_067680.1 · 83,666–85,144 bp · −
rpl23 · NC_067680.1 · 85,163–85,444 bp · −
trnI-CAU · NC_067680.1 · 85,610–85,683 bp · −
trnL-CAA · NC_067680.1 · 93,208–93,288 bp · −
ndhB · NC_067680.1 · 93,860–96,067 bp · −
rps7 · NC_067680.1 · 96,338–96,805 bp · −
trnN-GUU · NC_067680.1 · 107,803–107,874 bp · −
ndhF · NC_067680.1 · 109,240–111,471 bp · −
ndhD · NC_067680.1 · 114,254–115,783 bp · −
psaC · NC_067680.1 · 115,874–116,119 bp · −
ndhE · NC_067680.1 · 116,375–116,680 bp · −
ndhG · NC_067680.1 · 116,895–117,425 bp · −
ndhI · NC_067680.1 · 117,784–118,290 bp · −
ndhA · NC_067680.1 · 118,371–120,494 bp · −
ndhH · NC_067680.1 · 120,496–121,677 bp · −
rps15 · NC_067680.1 · 121,792–122,064 bp · −
ycf1 · NC_067680.1 · 122,494–128,016 bp · −
trnR-ACG · NC_067680.1 · 128,996–129,069 bp · −
rrn5 · NC_067680.1 · 129,313–129,433 bp · −
rrn4.5 · NC_067680.1 · 129,689–129,791 bp · −
rrn23 · NC_067680.1 · 129,890–132,700 bp · −
trnA-UGC · NC_067680.1 · 132,872–133,750 bp · −
trnI-GAU · NC_067680.1 · 133,815–134,833 bp · −
rrn16 · NC_067680.1 · 135,131–136,621 bp · −
trnV-GAC · NC_067680.1 · 136,848–136,919 bp · −
ycf15 · NC_067680.1 · 143,285–143,434 bp · −
ycf2 · NC_067680.1 · 143,624–150,454 bp · −
psbK · NC_067680.1 · 7,338–7,523 bp · +
psbI · NC_067680.1 · 7,911–8,021 bp · +
trnG-UCC · NC_067680.1 · 9,033–9,792 bp · +
trnR-UCU · NC_067680.1 · 9,983–10,054 bp · +
trnC-GCA · NC_067680.1 · 28,072–28,142 bp · +
petN · NC_067680.1 · 28,305–28,394 bp · +
trnT-GGU · NC_067680.1 · 31,036–31,107 bp · +
psbD · NC_067680.1 · 32,425–33,486 bp · +
psbC · NC_067680.1 · 33,434–34,855 bp · +
psbZ · NC_067680.1 · 35,524–35,712 bp · +
trnG-GCC · NC_067680.1 · 35,957–36,027 bp · +
trnS-GGA · NC_067680.1 · 44,921–45,007 bp · +
trnL-UAA · NC_067680.1 · 47,091–47,655 bp · +
trnF-GAA · NC_067680.1 · 47,949–48,021 bp · +
trnM-CAU · NC_067680.1 · 52,160–52,232 bp · +
rbcL · NC_067680.1 · 55,119–56,552 bp · +
accD · NC_067680.1 · 57,257–58,738 bp · +
psaI · NC_067680.1 · 59,439–59,549 bp · +
ycf4 · NC_067680.1 · 59,996–60,550 bp · +
cemA · NC_067680.1 · 61,141–61,830 bp · +
petA · NC_067680.1 · 62,045–63,007 bp · +
petL · NC_067680.1 · 65,719–65,814 bp · +
petG · NC_067680.1 · 65,989–66,102 bp · +
psaJ · NC_067680.1 · 66,827–66,961 bp · +
rpl33 · NC_067680.1 · 67,424–67,624 bp · +
rps18 · NC_067680.1 · 67,791–68,096 bp · +
rps12 · NC_067680.1 · 138,581–139,373 bp · +
psbB · NC_067680.1 · 72,072–73,598 bp · +
psbT · NC_067680.1 · 73,781–73,882 bp · +
psbH · NC_067680.1 · 74,185–74,403 bp · +
petB · NC_067680.1 · 74,529–75,896 bp · +
petD · NC_067680.1 · 76,085–77,277 bp · +
ycf2 · NC_067680.1 · 85,778–92,608 bp · +
ycf15 · NC_067680.1 · 92,798–92,947 bp · +
trnV-GAC · NC_067680.1 · 99,313–99,384 bp · +
rrn16 · NC_067680.1 · 99,611–101,101 bp · +
trnI-GAU · NC_067680.1 · 101,399–102,417 bp · +
trnA-UGC · NC_067680.1 · 102,482–103,360 bp · +
rrn23 · NC_067680.1 · 103,532–106,342 bp · +
rrn4.5 · NC_067680.1 · 106,441–106,543 bp · +
rrn5 · NC_067680.1 · 106,799–106,919 bp · +
trnR-ACG · NC_067680.1 · 107,163–107,236 bp · +
ycf1 · NC_067680.1 · 108,216–109,346 bp · +
rpl32 · NC_067680.1 · 111,947–112,117 bp · +
trnL-UAG · NC_067680.1 · 112,882–112,961 bp · +
ccsA · NC_067680.1 · 113,050–114,021 bp · +
trnN-GUU · NC_067680.1 · 128,358–128,429 bp · +
rps7 · NC_067680.1 · 139,427–139,894 bp · +
ndhB · NC_067680.1 · 140,165–142,372 bp · +
trnL-CAA · NC_067680.1 · 142,944–143,024 bp · +
trnI-CAU · NC_067680.1 · 150,549–150,622 bp · +
rpl23 · NC_067680.1 · 150,788–151,069 bp · +
rpl2 · NC_067680.1 · 151,088–152,566 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Isodon rugosus
ANNOTATED PLASTOME
NC_067680.1
152,677 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
ATP synthase
Ribosomal protein
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38169 76338 114508 152677 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK ON946_pgp086 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 11 85 75 Locate
psbA gene − 388 1446 1059 Locate
trnK-UUU gene − 1678 4258 2581 Locate
matK gene − 1998 3518 1521 Locate
ON946_pgp086 gene − 4784 5929 1146 Locate
trnQ-UUG gene − 6873 6944 72 Locate
psbK gene + 7338 7523 186 Locate
psbI gene + 7911 8021 111 Locate
trnS-GCU gene − 8176 8263 88 Locate
trnG-UCC gene + 9033 9792 760 Locate
trnR-UCU gene + 9983 10054 72 Locate
atpA gene − 10158 11681 1524 Locate
atpF gene − 11792 13037 1246 Locate
atpH gene − 13329 13574 246 Locate
atpI gene − 14575 15318 744 Locate
rps2 gene − 15544 16254 711 Locate
rpoC2 gene − 16471 20652 4182 Locate
rpoC1 gene − 20817 23650 2834 Locate
rpoB gene − 23677 26889 3213 Locate
trnC-GCA gene + 28072 28142 71 Locate
petN gene + 28305 28394 90 Locate
psbM gene − 29386 29490 105 Locate
trnD-GUC gene − 30009 30082 74 Locate
trnY-GUA gene − 30193 30276 84 Locate
trnE-UUC gene − 30354 30426 73 Locate
trnT-GGU gene + 31036 31107 72 Locate
psbD gene + 32425 33486 1062 Locate
psbC gene + 33434 34855 1422 Locate
trnS-UGA gene − 35091 35183 93 Locate
psbZ gene + 35524 35712 189 Locate
trnG-GCC gene + 35957 36027 71 Locate
trnfM-CAU gene − 36217 36290 74 Locate
rps14 gene − 36436 36738 303 Locate
psaB gene − 36861 39065 2205 Locate
psaA gene − 39091 41343 2253 Locate
ycf3 gene − 42111 44057 1947 Locate
trnS-GGA gene + 44921 45007 87 Locate
rps4 gene − 45304 45909 606 Locate
trnT-UGU gene − 46333 46405 73 Locate
trnL-UAA gene + 47091 47655 565 Locate
trnF-GAA gene + 47949 48021 73 Locate
ndhJ gene − 48689 49165 477 Locate
ndhK gene − 49312 49953 642 Locate
ndhC gene − 50005 50367 363 Locate
trnV-UAC gene − 51324 51979 656 Locate
trnM-CAU gene + 52160 52232 73 Locate
atpE gene − 52433 52834 402 Locate
atpB gene − 52831 54327 1497 Locate
rbcL gene + 55119 56552 1434 Locate
accD gene + 57257 58738 1482 Locate
psaI gene + 59439 59549 111 Locate
ycf4 gene + 59996 60550 555 Locate
cemA gene + 61141 61830 690 Locate
petA gene + 62045 63007 963 Locate
psbJ gene − 64044 64166 123 Locate
psbL gene − 64301 64417 117 Locate
psbF gene − 64441 64560 120 Locate
psbE gene − 64575 64826 252 Locate
petL gene + 65719 65814 96 Locate
petG gene + 65989 66102 114 Locate
trnW-CCA gene − 66225 66298 74 Locate
trnP-UGG gene − 66467 66540 74 Locate
psaJ gene + 66827 66961 135 Locate
rpl33 gene + 67424 67624 201 Locate
rps18 gene + 67791 68096 306 Locate
rpl20 gene − 68332 68718 387 Locate
rps12 gene − 69452 69565 114 Locate
clpP gene − 69684 71599 1916 Locate
psbB gene + 72072 73598 1527 Locate
psbT gene + 73781 73882 102 Locate
psbN gene − 73948 74079 132 Locate
psbH gene + 74185 74403 219 Locate
petB gene + 74529 75896 1368 Locate
petD gene + 76085 77277 1193 Locate
rpoA gene − 77454 78461 1008 Locate
rps11 gene − 78533 78949 417 Locate
rpl36 gene − 79065 79178 114 Locate
infA gene − 79274 79507 234 Locate
rps8 gene − 79634 80038 405 Locate
rpl14 gene − 80221 80589 369 Locate
rpl16 gene − 80723 81990 1268 Locate
rps3 gene − 82134 82796 663 Locate
rpl22 gene − 82781 83254 474 Locate
rps19 gene − 83319 83597 279 Locate
rpl2 gene − 83666 85144 1479 Locate
rpl23 gene − 85163 85444 282 Locate
trnI-CAU gene − 85610 85683 74 Locate
ycf2 gene + 85778 92608 6831 Locate
ycf15 gene + 92798 92947 150 Locate
trnL-CAA gene − 93208 93288 81 Locate
ndhB gene − 93860 96067 2208 Locate
rps7 gene − 96338 96805 468 Locate
rps12 gene − 96859 97651 793 Locate
trnV-GAC gene + 99313 99384 72 Locate
rrn16 gene + 99611 101101 1491 Locate
trnI-GAU gene + 101399 102417 1019 Locate
trnA-UGC gene + 102482 103360 879 Locate
rrn23 gene + 103532 106342 2811 Locate
rrn4.5 gene + 106441 106543 103 Locate
rrn5 gene + 106799 106919 121 Locate
trnR-ACG gene + 107163 107236 74 Locate
trnN-GUU gene − 107803 107874 72 Locate
ycf1 gene + 108216 109346 1131 Locate
ndhF gene − 109240 111471 2232 Locate
rpl32 gene + 111947 112117 171 Locate
trnL-UAG gene + 112882 112961 80 Locate
ccsA gene + 113050 114021 972 Locate
ndhD gene − 114254 115783 1530 Locate
psaC gene − 115874 116119 246 Locate
ndhE gene − 116375 116680 306 Locate
ndhG gene − 116895 117425 531 Locate
ndhI gene − 117784 118290 507 Locate
ndhA gene − 118371 120494 2124 Locate
ndhH gene − 120496 121677 1182 Locate
rps15 gene − 121792 122064 273 Locate
ycf1 gene − 122494 128016 5523 Locate
trnN-GUU gene + 128358 128429 72 Locate
trnR-ACG gene − 128996 129069 74 Locate
rrn5 gene − 129313 129433 121 Locate
rrn4.5 gene − 129689 129791 103 Locate
rrn23 gene − 129890 132700 2811 Locate
trnA-UGC gene − 132872 133750 879 Locate
trnI-GAU gene − 133815 134833 1019 Locate
rrn16 gene − 135131 136621 1491 Locate
trnV-GAC gene − 136848 136919 72 Locate
rps12 gene + 138581 139373 793 Locate
rps7 gene + 139427 139894 468 Locate
ndhB gene + 140165 142372 2208 Locate
trnL-CAA gene + 142944 143024 81 Locate
ycf15 gene − 143285 143434 150 Locate
ycf2 gene − 143624 150454 6831 Locate
trnI-CAU gene + 150549 150622 74 Locate
rpl23 gene + 150788 151069 282 Locate
rpl2 gene + 151088 152566 1479 Locate
Status Available
Accession NC_067680.1
Length 152,677 bp
GC content 37.6%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 16 Atp Synthase 6 Ribosomal Protein 25 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources