Isodon schimperi chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · NC_067708.1 · 11–85 bp · −
psbA · NC_067708.1 · 390–1,448 bp · −
trnK-UUU · NC_067708.1 · 1,680–4,255 bp · −
matK · NC_067708.1 · 2,000–3,520 bp · −
ON844_pgp086 · NC_067708.1 · 4,784–5,917 bp · −
trnQ-UUG · NC_067708.1 · 6,864–6,935 bp · −
trnS-GCU · NC_067708.1 · 8,169–8,256 bp · −
atpA · NC_067708.1 · 10,133–11,656 bp · −
atpF · NC_067708.1 · 11,766–13,011 bp · −
atpH · NC_067708.1 · 13,303–13,548 bp · −
atpI · NC_067708.1 · 14,518–15,261 bp · −
rps2 · NC_067708.1 · 15,490–16,200 bp · −
rpoC2 · NC_067708.1 · 16,414–20,595 bp · −
rpoC1 · NC_067708.1 · 20,760–23,591 bp · −
rpoB · NC_067708.1 · 23,618–26,830 bp · −
psbM · NC_067708.1 · 29,321–29,425 bp · −
trnD-GUC · NC_067708.1 · 29,939–30,012 bp · −
trnY-GUA · NC_067708.1 · 30,123–30,206 bp · −
trnE-UUC · NC_067708.1 · 30,284–30,356 bp · −
trnS-UGA · NC_067708.1 · 35,063–35,155 bp · −
trnfM-CAU · NC_067708.1 · 36,168–36,241 bp · −
rps14 · NC_067708.1 · 36,386–36,688 bp · −
psaB · NC_067708.1 · 36,810–39,014 bp · −
psaA · NC_067708.1 · 39,040–41,292 bp · −
ycf3 · NC_067708.1 · 42,082–44,030 bp · −
rps4 · NC_067708.1 · 45,257–45,862 bp · −
trnT-UGU · NC_067708.1 · 46,258–46,330 bp · −
ndhJ · NC_067708.1 · 48,580–49,056 bp · −
ndhK · NC_067708.1 · 49,167–49,844 bp · −
ndhC · NC_067708.1 · 49,896–50,258 bp · −
trnV-UAC · NC_067708.1 · 51,205–51,860 bp · −
atpE · NC_067708.1 · 52,313–52,714 bp · −
atpB · NC_067708.1 · 52,711–54,207 bp · −
psbJ · NC_067708.1 · 63,874–63,996 bp · −
psbL · NC_067708.1 · 64,131–64,247 bp · −
psbF · NC_067708.1 · 64,271–64,390 bp · −
psbE · NC_067708.1 · 64,405–64,656 bp · −
trnW-CCA · NC_067708.1 · 66,047–66,120 bp · −
trnP-UGG · NC_067708.1 · 66,289–66,362 bp · −
rpl20 · NC_067708.1 · 68,140–68,526 bp · −
rps12 · NC_067708.1 · 69,258–69,371 bp · −
rps12 · NC_067708.1 · 96,608–97,401 bp · −
clpP · NC_067708.1 · 69,489–71,400 bp · −
psbN · NC_067708.1 · 73,753–73,884 bp · −
rpoA · NC_067708.1 · 77,286–78,293 bp · −
rps11 · NC_067708.1 · 78,365–78,781 bp · −
rpl36 · NC_067708.1 · 78,897–79,010 bp · −
infA · NC_067708.1 · 79,106–79,339 bp · −
rps8 · NC_067708.1 · 79,468–79,872 bp · −
rpl14 · NC_067708.1 · 80,044–80,412 bp · −
rpl16 · NC_067708.1 · 80,546–81,730 bp · −
rps3 · NC_067708.1 · 81,874–82,536 bp · −
rpl22 · NC_067708.1 · 82,521–82,994 bp · −
rps19 · NC_067708.1 · 83,059–83,337 bp · −
rpl2 · NC_067708.1 · 83,406–84,884 bp · −
rpl23 · NC_067708.1 · 84,903–85,184 bp · −
trnI-CAU · NC_067708.1 · 85,350–85,423 bp · −
trnL-CAA · NC_067708.1 · 92,957–93,037 bp · −
ndhB · NC_067708.1 · 93,609–95,816 bp · −
rps7 · NC_067708.1 · 96,087–96,554 bp · −
trnN-GUU · NC_067708.1 · 107,556–107,627 bp · −
ndhF · NC_067708.1 · 108,993–111,224 bp · −
ndhD · NC_067708.1 · 113,990–115,519 bp · −
psaC · NC_067708.1 · 115,610–115,855 bp · −
ndhE · NC_067708.1 · 116,111–116,416 bp · −
ndhG · NC_067708.1 · 116,631–117,161 bp · −
ndhI · NC_067708.1 · 117,523–118,029 bp · −
ndhA · NC_067708.1 · 118,110–120,223 bp · −
ndhH · NC_067708.1 · 120,225–121,406 bp · −
rps15 · NC_067708.1 · 121,521–121,793 bp · −
ycf1 · NC_067708.1 · 122,227–127,776 bp · −
trnR-ACG · NC_067708.1 · 128,761–128,834 bp · −
rrn5 · NC_067708.1 · 129,078–129,198 bp · −
rrn4.5 · NC_067708.1 · 129,454–129,556 bp · −
rrn23 · NC_067708.1 · 129,655–132,465 bp · −
trnA-UGC · NC_067708.1 · 132,637–133,515 bp · −
trnI-GAU · NC_067708.1 · 133,580–134,597 bp · −
rrn16 · NC_067708.1 · 134,895–136,385 bp · −
trnV-GAC · NC_067708.1 · 136,612–136,683 bp · −
ycf15 · NC_067708.1 · 143,049–143,198 bp · −
ycf2 · NC_067708.1 · 143,388–150,227 bp · −
psbK · NC_067708.1 · 7,329–7,514 bp · +
psbI · NC_067708.1 · 7,904–8,014 bp · +
trnG-UCC · NC_067708.1 · 9,014–9,772 bp · +
trnR-UCU · NC_067708.1 · 9,957–10,028 bp · +
trnC-GCA · NC_067708.1 · 28,012–28,082 bp · +
petN · NC_067708.1 · 28,244–28,333 bp · +
trnT-GGU · NC_067708.1 · 30,942–31,013 bp · +
psbD · NC_067708.1 · 32,395–33,456 bp · +
psbC · NC_067708.1 · 33,404–34,825 bp · +
psbZ · NC_067708.1 · 35,496–35,684 bp · +
trnG-GCC · NC_067708.1 · 35,929–35,999 bp · +
trnS-GGA · NC_067708.1 · 44,879–44,965 bp · +
trnL-UAA · NC_067708.1 · 47,016–47,559 bp · +
trnF-GAA · NC_067708.1 · 47,851–47,923 bp · +
trnM-CAU · NC_067708.1 · 52,041–52,113 bp · +
rbcL · NC_067708.1 · 55,006–56,439 bp · +
accD · NC_067708.1 · 57,151–58,632 bp · +
psaI · NC_067708.1 · 59,328–59,438 bp · +
ycf4 · NC_067708.1 · 59,893–60,447 bp · +
cemA · NC_067708.1 · 60,968–61,657 bp · +
petA · NC_067708.1 · 61,872–62,834 bp · +
petL · NC_067708.1 · 65,541–65,636 bp · +
petG · NC_067708.1 · 65,811–65,924 bp · +
psaJ · NC_067708.1 · 66,646–66,780 bp · +
rpl33 · NC_067708.1 · 67,231–67,431 bp · +
rps18 · NC_067708.1 · 67,598–67,903 bp · +
rps12 · NC_067708.1 · 138,344–139,137 bp · +
psbB · NC_067708.1 · 71,873–73,399 bp · +
psbT · NC_067708.1 · 73,586–73,687 bp · +
psbH · NC_067708.1 · 73,990–74,208 bp · +
petB · NC_067708.1 · 74,343–75,728 bp · +
petD · NC_067708.1 · 75,917–77,109 bp · +
ycf2 · NC_067708.1 · 85,518–92,357 bp · +
ycf15 · NC_067708.1 · 92,547–92,696 bp · +
trnV-GAC · NC_067708.1 · 99,062–99,133 bp · +
rrn16 · NC_067708.1 · 99,360–100,850 bp · +
trnI-GAU · NC_067708.1 · 101,148–102,165 bp · +
trnA-UGC · NC_067708.1 · 102,230–103,108 bp · +
rrn23 · NC_067708.1 · 103,280–106,090 bp · +
rrn4.5 · NC_067708.1 · 106,189–106,291 bp · +
rrn5 · NC_067708.1 · 106,547–106,667 bp · +
trnR-ACG · NC_067708.1 · 106,911–106,984 bp · +
ycf1 · NC_067708.1 · 107,969–109,099 bp · +
rpl32 · NC_067708.1 · 111,700–111,870 bp · +
trnL-UAG · NC_067708.1 · 112,618–112,697 bp · +
ccsA · NC_067708.1 · 112,786–113,757 bp · +
trnN-GUU · NC_067708.1 · 128,118–128,189 bp · +
rps7 · NC_067708.1 · 139,191–139,658 bp · +
ndhB · NC_067708.1 · 139,929–142,136 bp · +
trnL-CAA · NC_067708.1 · 142,708–142,788 bp · +
trnI-CAU · NC_067708.1 · 150,322–150,395 bp · +
rpl23 · NC_067708.1 · 150,561–150,842 bp · +
rpl2 · NC_067708.1 · 150,861–152,339 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Isodon schimperi
ANNOTATED PLASTOME
NC_067708.1
152,450 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
ATP synthase
Ribosomal protein
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38112 76225 114338 152450 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK ON844_pgp086 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 11 85 75 Locate
psbA gene − 390 1448 1059 Locate
trnK-UUU gene − 1680 4255 2576 Locate
matK gene − 2000 3520 1521 Locate
ON844_pgp086 gene − 4784 5917 1134 Locate
trnQ-UUG gene − 6864 6935 72 Locate
psbK gene + 7329 7514 186 Locate
psbI gene + 7904 8014 111 Locate
trnS-GCU gene − 8169 8256 88 Locate
trnG-UCC gene + 9014 9772 759 Locate
trnR-UCU gene + 9957 10028 72 Locate
atpA gene − 10133 11656 1524 Locate
atpF gene − 11766 13011 1246 Locate
atpH gene − 13303 13548 246 Locate
atpI gene − 14518 15261 744 Locate
rps2 gene − 15490 16200 711 Locate
rpoC2 gene − 16414 20595 4182 Locate
rpoC1 gene − 20760 23591 2832 Locate
rpoB gene − 23618 26830 3213 Locate
trnC-GCA gene + 28012 28082 71 Locate
petN gene + 28244 28333 90 Locate
psbM gene − 29321 29425 105 Locate
trnD-GUC gene − 29939 30012 74 Locate
trnY-GUA gene − 30123 30206 84 Locate
trnE-UUC gene − 30284 30356 73 Locate
trnT-GGU gene + 30942 31013 72 Locate
psbD gene + 32395 33456 1062 Locate
psbC gene + 33404 34825 1422 Locate
trnS-UGA gene − 35063 35155 93 Locate
psbZ gene + 35496 35684 189 Locate
trnG-GCC gene + 35929 35999 71 Locate
trnfM-CAU gene − 36168 36241 74 Locate
rps14 gene − 36386 36688 303 Locate
psaB gene − 36810 39014 2205 Locate
psaA gene − 39040 41292 2253 Locate
ycf3 gene − 42082 44030 1949 Locate
trnS-GGA gene + 44879 44965 87 Locate
rps4 gene − 45257 45862 606 Locate
trnT-UGU gene − 46258 46330 73 Locate
trnL-UAA gene + 47016 47559 544 Locate
trnF-GAA gene + 47851 47923 73 Locate
ndhJ gene − 48580 49056 477 Locate
ndhK gene − 49167 49844 678 Locate
ndhC gene − 49896 50258 363 Locate
trnV-UAC gene − 51205 51860 656 Locate
trnM-CAU gene + 52041 52113 73 Locate
atpE gene − 52313 52714 402 Locate
atpB gene − 52711 54207 1497 Locate
rbcL gene + 55006 56439 1434 Locate
accD gene + 57151 58632 1482 Locate
psaI gene + 59328 59438 111 Locate
ycf4 gene + 59893 60447 555 Locate
cemA gene + 60968 61657 690 Locate
petA gene + 61872 62834 963 Locate
psbJ gene − 63874 63996 123 Locate
psbL gene − 64131 64247 117 Locate
psbF gene − 64271 64390 120 Locate
psbE gene − 64405 64656 252 Locate
petL gene + 65541 65636 96 Locate
petG gene + 65811 65924 114 Locate
trnW-CCA gene − 66047 66120 74 Locate
trnP-UGG gene − 66289 66362 74 Locate
psaJ gene + 66646 66780 135 Locate
rpl33 gene + 67231 67431 201 Locate
rps18 gene + 67598 67903 306 Locate
rpl20 gene − 68140 68526 387 Locate
rps12 gene − 69258 69371 114 Locate
clpP gene − 69489 71400 1912 Locate
psbB gene + 71873 73399 1527 Locate
psbT gene + 73586 73687 102 Locate
psbN gene − 73753 73884 132 Locate
psbH gene + 73990 74208 219 Locate
petB gene + 74343 75728 1386 Locate
petD gene + 75917 77109 1193 Locate
rpoA gene − 77286 78293 1008 Locate
rps11 gene − 78365 78781 417 Locate
rpl36 gene − 78897 79010 114 Locate
infA gene − 79106 79339 234 Locate
rps8 gene − 79468 79872 405 Locate
rpl14 gene − 80044 80412 369 Locate
rpl16 gene − 80546 81730 1185 Locate
rps3 gene − 81874 82536 663 Locate
rpl22 gene − 82521 82994 474 Locate
rps19 gene − 83059 83337 279 Locate
rpl2 gene − 83406 84884 1479 Locate
rpl23 gene − 84903 85184 282 Locate
trnI-CAU gene − 85350 85423 74 Locate
ycf2 gene + 85518 92357 6840 Locate
ycf15 gene + 92547 92696 150 Locate
trnL-CAA gene − 92957 93037 81 Locate
ndhB gene − 93609 95816 2208 Locate
rps7 gene − 96087 96554 468 Locate
rps12 gene − 96608 97401 794 Locate
trnV-GAC gene + 99062 99133 72 Locate
rrn16 gene + 99360 100850 1491 Locate
trnI-GAU gene + 101148 102165 1018 Locate
trnA-UGC gene + 102230 103108 879 Locate
rrn23 gene + 103280 106090 2811 Locate
rrn4.5 gene + 106189 106291 103 Locate
rrn5 gene + 106547 106667 121 Locate
trnR-ACG gene + 106911 106984 74 Locate
trnN-GUU gene − 107556 107627 72 Locate
ycf1 gene + 107969 109099 1131 Locate
ndhF gene − 108993 111224 2232 Locate
rpl32 gene + 111700 111870 171 Locate
trnL-UAG gene + 112618 112697 80 Locate
ccsA gene + 112786 113757 972 Locate
ndhD gene − 113990 115519 1530 Locate
psaC gene − 115610 115855 246 Locate
ndhE gene − 116111 116416 306 Locate
ndhG gene − 116631 117161 531 Locate
ndhI gene − 117523 118029 507 Locate
ndhA gene − 118110 120223 2114 Locate
ndhH gene − 120225 121406 1182 Locate
rps15 gene − 121521 121793 273 Locate
ycf1 gene − 122227 127776 5550 Locate
trnN-GUU gene + 128118 128189 72 Locate
trnR-ACG gene − 128761 128834 74 Locate
rrn5 gene − 129078 129198 121 Locate
rrn4.5 gene − 129454 129556 103 Locate
rrn23 gene − 129655 132465 2811 Locate
trnA-UGC gene − 132637 133515 879 Locate
trnI-GAU gene − 133580 134597 1018 Locate
rrn16 gene − 134895 136385 1491 Locate
trnV-GAC gene − 136612 136683 72 Locate
rps12 gene + 138344 139137 794 Locate
rps7 gene + 139191 139658 468 Locate
ndhB gene + 139929 142136 2208 Locate
trnL-CAA gene + 142708 142788 81 Locate
ycf15 gene − 143049 143198 150 Locate
ycf2 gene − 143388 150227 6840 Locate
trnI-CAU gene + 150322 150395 74 Locate
rpl23 gene + 150561 150842 282 Locate
rpl2 gene + 150861 152339 1479 Locate
Status Available
Accession NC_067708.1
Length 152,450 bp
GC content 37.6%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 16 Atp Synthase 6 Ribosomal Protein 25 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources