Isodon scoparius chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · NC_067681.1 · 11–85 bp · −
psbA · NC_067681.1 · 393–1,451 bp · −
trnK-UUU · NC_067681.1 · 1,683–4,263 bp · −
matK · NC_067681.1 · 2,003–3,523 bp · −
OOC22_pgp086 · NC_067681.1 · 4,789–5,934 bp · −
trnQ-UUG · NC_067681.1 · 6,880–6,951 bp · −
trnS-GCU · NC_067681.1 · 8,188–8,275 bp · −
atpA · NC_067681.1 · 10,162–11,685 bp · −
atpF · NC_067681.1 · 11,797–13,041 bp · −
atpH · NC_067681.1 · 13,333–13,578 bp · −
atpI · NC_067681.1 · 14,579–15,322 bp · −
rps2 · NC_067681.1 · 15,547–16,257 bp · −
rpoC2 · NC_067681.1 · 16,474–20,655 bp · −
rpoC1 · NC_067681.1 · 20,820–23,653 bp · −
rpoB · NC_067681.1 · 23,680–26,892 bp · −
psbM · NC_067681.1 · 29,396–29,500 bp · −
trnD-GUC · NC_067681.1 · 30,019–30,092 bp · −
trnY-GUA · NC_067681.1 · 30,203–30,286 bp · −
trnE-UUC · NC_067681.1 · 30,364–30,436 bp · −
trnS-UGA · NC_067681.1 · 35,101–35,193 bp · −
trnfM-CAU · NC_067681.1 · 36,226–36,299 bp · −
rps14 · NC_067681.1 · 36,445–36,747 bp · −
psaB · NC_067681.1 · 36,870–39,074 bp · −
psaA · NC_067681.1 · 39,100–41,352 bp · −
ycf3 · NC_067681.1 · 42,126–44,072 bp · −
rps4 · NC_067681.1 · 45,312–45,917 bp · −
trnT-UGU · NC_067681.1 · 46,312–46,384 bp · −
ndhJ · NC_067681.1 · 48,654–49,130 bp · −
ndhK · NC_067681.1 · 49,277–49,918 bp · −
ndhC · NC_067681.1 · 49,970–50,332 bp · −
trnV-UAC · NC_067681.1 · 51,289–51,944 bp · −
atpE · NC_067681.1 · 52,398–52,799 bp · −
atpB · NC_067681.1 · 52,796–54,292 bp · −
psbJ · NC_067681.1 · 64,005–64,127 bp · −
psbL · NC_067681.1 · 64,262–64,378 bp · −
psbF · NC_067681.1 · 64,402–64,521 bp · −
psbE · NC_067681.1 · 64,536–64,787 bp · −
trnW-CCA · NC_067681.1 · 66,186–66,259 bp · −
trnP-UGG · NC_067681.1 · 66,428–66,501 bp · −
rpl20 · NC_067681.1 · 68,285–68,671 bp · −
rps12 · NC_067681.1 · 69,405–69,518 bp · −
rps12 · NC_067681.1 · 96,817–97,609 bp · −
clpP · NC_067681.1 · 69,637–71,554 bp · −
psbN · NC_067681.1 · 73,906–74,037 bp · −
rpoA · NC_067681.1 · 77,412–78,419 bp · −
rps11 · NC_067681.1 · 78,492–78,908 bp · −
rpl36 · NC_067681.1 · 79,024–79,137 bp · −
infA · NC_067681.1 · 79,233–79,466 bp · −
rps8 · NC_067681.1 · 79,593–79,997 bp · −
rpl14 · NC_067681.1 · 80,180–80,548 bp · −
rpl16 · NC_067681.1 · 80,682–81,949 bp · −
rps3 · NC_067681.1 · 82,093–82,755 bp · −
rpl22 · NC_067681.1 · 82,740–83,213 bp · −
rps19 · NC_067681.1 · 83,278–83,556 bp · −
rpl2 · NC_067681.1 · 83,624–85,102 bp · −
rpl23 · NC_067681.1 · 85,121–85,402 bp · −
trnI-CAU · NC_067681.1 · 85,568–85,641 bp · −
trnL-CAA · NC_067681.1 · 93,166–93,246 bp · −
ndhB · NC_067681.1 · 93,818–96,025 bp · −
rps7 · NC_067681.1 · 96,296–96,763 bp · −
trnN-GUU · NC_067681.1 · 107,755–107,826 bp · −
ndhF · NC_067681.1 · 109,192–111,423 bp · −
ndhD · NC_067681.1 · 114,205–115,734 bp · −
psaC · NC_067681.1 · 115,825–116,070 bp · −
ndhE · NC_067681.1 · 116,326–116,631 bp · −
ndhG · NC_067681.1 · 116,846–117,376 bp · −
ndhI · NC_067681.1 · 117,736–118,242 bp · −
ndhA · NC_067681.1 · 118,323–120,444 bp · −
ndhH · NC_067681.1 · 120,446–121,627 bp · −
rps15 · NC_067681.1 · 121,750–122,022 bp · −
ycf1 · NC_067681.1 · 122,452–127,956 bp · −
trnR-ACG · NC_067681.1 · 128,930–129,003 bp · −
rrn5 · NC_067681.1 · 129,247–129,367 bp · −
rrn4.5 · NC_067681.1 · 129,623–129,725 bp · −
rrn23 · NC_067681.1 · 129,824–132,634 bp · −
trnA-UGC · NC_067681.1 · 132,806–133,684 bp · −
trnI-GAU · NC_067681.1 · 133,749–134,767 bp · −
rrn16 · NC_067681.1 · 135,065–136,555 bp · −
trnV-GAC · NC_067681.1 · 136,782–136,853 bp · −
ycf15 · NC_067681.1 · 143,219–143,368 bp · −
ycf2 · NC_067681.1 · 143,558–150,388 bp · −
psbK · NC_067681.1 · 7,345–7,530 bp · +
psbI · NC_067681.1 · 7,918–8,028 bp · +
trnG-UCC · NC_067681.1 · 9,038–9,796 bp · +
trnR-UCU · NC_067681.1 · 9,987–10,058 bp · +
trnC-GCA · NC_067681.1 · 28,082–28,152 bp · +
petN · NC_067681.1 · 28,315–28,404 bp · +
trnT-GGU · NC_067681.1 · 31,046–31,117 bp · +
psbD · NC_067681.1 · 32,435–33,496 bp · +
psbC · NC_067681.1 · 33,444–34,865 bp · +
psbZ · NC_067681.1 · 35,534–35,722 bp · +
trnG-GCC · NC_067681.1 · 35,967–36,037 bp · +
trnS-GGA · NC_067681.1 · 44,936–45,022 bp · +
trnL-UAA · NC_067681.1 · 47,056–47,620 bp · +
trnF-GAA · NC_067681.1 · 47,914–47,986 bp · +
trnM-CAU · NC_067681.1 · 52,125–52,197 bp · +
rbcL · NC_067681.1 · 55,083–56,516 bp · +
accD · NC_067681.1 · 57,222–58,703 bp · +
psaI · NC_067681.1 · 59,405–59,515 bp · +
ycf4 · NC_067681.1 · 59,962–60,516 bp · +
cemA · NC_067681.1 · 61,100–61,789 bp · +
petA · NC_067681.1 · 62,004–62,966 bp · +
petL · NC_067681.1 · 65,680–65,775 bp · +
petG · NC_067681.1 · 65,950–66,063 bp · +
psaJ · NC_067681.1 · 66,783–66,917 bp · +
rpl33 · NC_067681.1 · 67,378–67,578 bp · +
rps18 · NC_067681.1 · 67,745–68,050 bp · +
rps12 · NC_067681.1 · 138,515–139,307 bp · +
psbB · NC_067681.1 · 72,027–73,553 bp · +
psbT · NC_067681.1 · 73,739–73,840 bp · +
psbH · NC_067681.1 · 74,143–74,361 bp · +
petB · NC_067681.1 · 74,487–75,853 bp · +
petD · NC_067681.1 · 76,042–77,235 bp · +
ycf2 · NC_067681.1 · 85,736–92,566 bp · +
ycf15 · NC_067681.1 · 92,756–92,905 bp · +
trnV-GAC · NC_067681.1 · 99,271–99,342 bp · +
rrn16 · NC_067681.1 · 99,569–101,059 bp · +
trnI-GAU · NC_067681.1 · 101,357–102,375 bp · +
trnA-UGC · NC_067681.1 · 102,440–103,318 bp · +
rrn23 · NC_067681.1 · 103,490–106,300 bp · +
rrn4.5 · NC_067681.1 · 106,399–106,501 bp · +
rrn5 · NC_067681.1 · 106,757–106,877 bp · +
trnR-ACG · NC_067681.1 · 107,121–107,194 bp · +
ycf1 · NC_067681.1 · 108,168–109,298 bp · +
rpl32 · NC_067681.1 · 111,900–112,070 bp · +
trnL-UAG · NC_067681.1 · 112,834–112,913 bp · +
ccsA · NC_067681.1 · 113,002–113,973 bp · +
trnN-GUU · NC_067681.1 · 128,298–128,369 bp · +
rps7 · NC_067681.1 · 139,361–139,828 bp · +
ndhB · NC_067681.1 · 140,099–142,306 bp · +
trnL-CAA · NC_067681.1 · 142,878–142,958 bp · +
trnI-CAU · NC_067681.1 · 150,483–150,556 bp · +
rpl23 · NC_067681.1 · 150,722–151,003 bp · +
rpl2 · NC_067681.1 · 151,022–152,500 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Isodon scoparius
ANNOTATED PLASTOME
NC_067681.1
152,610 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
ATP synthase
Ribosomal protein
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38152 76305 114458 152610 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK OOC22_pgp086 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 11 85 75 Locate
psbA gene − 393 1451 1059 Locate
trnK-UUU gene − 1683 4263 2581 Locate
matK gene − 2003 3523 1521 Locate
OOC22_pgp086 gene − 4789 5934 1146 Locate
trnQ-UUG gene − 6880 6951 72 Locate
psbK gene + 7345 7530 186 Locate
psbI gene + 7918 8028 111 Locate
trnS-GCU gene − 8188 8275 88 Locate
trnG-UCC gene + 9038 9796 759 Locate
trnR-UCU gene + 9987 10058 72 Locate
atpA gene − 10162 11685 1524 Locate
atpF gene − 11797 13041 1245 Locate
atpH gene − 13333 13578 246 Locate
atpI gene − 14579 15322 744 Locate
rps2 gene − 15547 16257 711 Locate
rpoC2 gene − 16474 20655 4182 Locate
rpoC1 gene − 20820 23653 2834 Locate
rpoB gene − 23680 26892 3213 Locate
trnC-GCA gene + 28082 28152 71 Locate
petN gene + 28315 28404 90 Locate
psbM gene − 29396 29500 105 Locate
trnD-GUC gene − 30019 30092 74 Locate
trnY-GUA gene − 30203 30286 84 Locate
trnE-UUC gene − 30364 30436 73 Locate
trnT-GGU gene + 31046 31117 72 Locate
psbD gene + 32435 33496 1062 Locate
psbC gene + 33444 34865 1422 Locate
trnS-UGA gene − 35101 35193 93 Locate
psbZ gene + 35534 35722 189 Locate
trnG-GCC gene + 35967 36037 71 Locate
trnfM-CAU gene − 36226 36299 74 Locate
rps14 gene − 36445 36747 303 Locate
psaB gene − 36870 39074 2205 Locate
psaA gene − 39100 41352 2253 Locate
ycf3 gene − 42126 44072 1947 Locate
trnS-GGA gene + 44936 45022 87 Locate
rps4 gene − 45312 45917 606 Locate
trnT-UGU gene − 46312 46384 73 Locate
trnL-UAA gene + 47056 47620 565 Locate
trnF-GAA gene + 47914 47986 73 Locate
ndhJ gene − 48654 49130 477 Locate
ndhK gene − 49277 49918 642 Locate
ndhC gene − 49970 50332 363 Locate
trnV-UAC gene − 51289 51944 656 Locate
trnM-CAU gene + 52125 52197 73 Locate
atpE gene − 52398 52799 402 Locate
atpB gene − 52796 54292 1497 Locate
rbcL gene + 55083 56516 1434 Locate
accD gene + 57222 58703 1482 Locate
psaI gene + 59405 59515 111 Locate
ycf4 gene + 59962 60516 555 Locate
cemA gene + 61100 61789 690 Locate
petA gene + 62004 62966 963 Locate
psbJ gene − 64005 64127 123 Locate
psbL gene − 64262 64378 117 Locate
psbF gene − 64402 64521 120 Locate
psbE gene − 64536 64787 252 Locate
petL gene + 65680 65775 96 Locate
petG gene + 65950 66063 114 Locate
trnW-CCA gene − 66186 66259 74 Locate
trnP-UGG gene − 66428 66501 74 Locate
psaJ gene + 66783 66917 135 Locate
rpl33 gene + 67378 67578 201 Locate
rps18 gene + 67745 68050 306 Locate
rpl20 gene − 68285 68671 387 Locate
rps12 gene − 69405 69518 114 Locate
clpP gene − 69637 71554 1918 Locate
psbB gene + 72027 73553 1527 Locate
psbT gene + 73739 73840 102 Locate
psbN gene − 73906 74037 132 Locate
psbH gene + 74143 74361 219 Locate
petB gene + 74487 75853 1367 Locate
petD gene + 76042 77235 1194 Locate
rpoA gene − 77412 78419 1008 Locate
rps11 gene − 78492 78908 417 Locate
rpl36 gene − 79024 79137 114 Locate
infA gene − 79233 79466 234 Locate
rps8 gene − 79593 79997 405 Locate
rpl14 gene − 80180 80548 369 Locate
rpl16 gene − 80682 81949 1268 Locate
rps3 gene − 82093 82755 663 Locate
rpl22 gene − 82740 83213 474 Locate
rps19 gene − 83278 83556 279 Locate
rpl2 gene − 83624 85102 1479 Locate
rpl23 gene − 85121 85402 282 Locate
trnI-CAU gene − 85568 85641 74 Locate
ycf2 gene + 85736 92566 6831 Locate
ycf15 gene + 92756 92905 150 Locate
trnL-CAA gene − 93166 93246 81 Locate
ndhB gene − 93818 96025 2208 Locate
rps7 gene − 96296 96763 468 Locate
rps12 gene − 96817 97609 793 Locate
trnV-GAC gene + 99271 99342 72 Locate
rrn16 gene + 99569 101059 1491 Locate
trnI-GAU gene + 101357 102375 1019 Locate
trnA-UGC gene + 102440 103318 879 Locate
rrn23 gene + 103490 106300 2811 Locate
rrn4.5 gene + 106399 106501 103 Locate
rrn5 gene + 106757 106877 121 Locate
trnR-ACG gene + 107121 107194 74 Locate
trnN-GUU gene − 107755 107826 72 Locate
ycf1 gene + 108168 109298 1131 Locate
ndhF gene − 109192 111423 2232 Locate
rpl32 gene + 111900 112070 171 Locate
trnL-UAG gene + 112834 112913 80 Locate
ccsA gene + 113002 113973 972 Locate
ndhD gene − 114205 115734 1530 Locate
psaC gene − 115825 116070 246 Locate
ndhE gene − 116326 116631 306 Locate
ndhG gene − 116846 117376 531 Locate
ndhI gene − 117736 118242 507 Locate
ndhA gene − 118323 120444 2122 Locate
ndhH gene − 120446 121627 1182 Locate
rps15 gene − 121750 122022 273 Locate
ycf1 gene − 122452 127956 5505 Locate
trnN-GUU gene + 128298 128369 72 Locate
trnR-ACG gene − 128930 129003 74 Locate
rrn5 gene − 129247 129367 121 Locate
rrn4.5 gene − 129623 129725 103 Locate
rrn23 gene − 129824 132634 2811 Locate
trnA-UGC gene − 132806 133684 879 Locate
trnI-GAU gene − 133749 134767 1019 Locate
rrn16 gene − 135065 136555 1491 Locate
trnV-GAC gene − 136782 136853 72 Locate
rps12 gene + 138515 139307 793 Locate
rps7 gene + 139361 139828 468 Locate
ndhB gene + 140099 142306 2208 Locate
trnL-CAA gene + 142878 142958 81 Locate
ycf15 gene − 143219 143368 150 Locate
ycf2 gene − 143558 150388 6831 Locate
trnI-CAU gene + 150483 150556 74 Locate
rpl23 gene + 150722 151003 282 Locate
rpl2 gene + 151022 152500 1479 Locate
Status Available
Accession NC_067681.1
Length 152,610 bp
GC content 37.6%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 16 Atp Synthase 6 Ribosomal Protein 25 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources