Isodon scrophularioides chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · NC_067682.1 · 11–85 bp · −
psbA · NC_067682.1 · 317–1,375 bp · −
trnK-UUU · NC_067682.1 · 1,607–4,187 bp · −
matK · NC_067682.1 · 1,927–3,447 bp · −
ON967_pgp086 · NC_067682.1 · 4,725–5,866 bp · −
trnQ-UUG · NC_067682.1 · 6,718–6,789 bp · −
trnS-GCU · NC_067682.1 · 8,025–8,112 bp · −
atpA · NC_067682.1 · 9,899–11,422 bp · −
atpF · NC_067682.1 · 11,523–12,770 bp · −
atpH · NC_067682.1 · 13,062–13,307 bp · −
atpI · NC_067682.1 · 14,246–14,989 bp · −
rps2 · NC_067682.1 · 15,215–15,925 bp · −
rpoC2 · NC_067682.1 · 16,140–20,327 bp · −
rpoC1 · NC_067682.1 · 20,492–23,325 bp · −
rpoB · NC_067682.1 · 23,352–26,564 bp · −
psbM · NC_067682.1 · 29,085–29,189 bp · −
trnD-GUC · NC_067682.1 · 29,708–29,781 bp · −
trnY-GUA · NC_067682.1 · 29,892–29,975 bp · −
trnE-UUC · NC_067682.1 · 30,053–30,125 bp · −
trnS-UGA · NC_067682.1 · 34,811–34,903 bp · −
trnfM-CAU · NC_067682.1 · 35,912–35,985 bp · −
rps14 · NC_067682.1 · 36,130–36,432 bp · −
psaB · NC_067682.1 · 36,555–38,759 bp · −
psaA · NC_067682.1 · 38,785–41,037 bp · −
ycf3 · NC_067682.1 · 41,837–43,798 bp · −
rps4 · NC_067682.1 · 45,026–45,631 bp · −
trnT-UGU · NC_067682.1 · 46,046–46,118 bp · −
ndhJ · NC_067682.1 · 48,405–48,881 bp · −
ndhK · NC_067682.1 · 48,992–49,669 bp · −
ndhC · NC_067682.1 · 49,721–50,083 bp · −
trnV-UAC · NC_067682.1 · 51,010–51,667 bp · −
atpE · NC_067682.1 · 52,126–52,527 bp · −
atpB · NC_067682.1 · 52,524–54,020 bp · −
psbJ · NC_067682.1 · 63,695–63,817 bp · −
psbL · NC_067682.1 · 63,952–64,068 bp · −
psbF · NC_067682.1 · 64,092–64,211 bp · −
psbE · NC_067682.1 · 64,226–64,477 bp · −
trnW-CCA · NC_067682.1 · 65,877–65,950 bp · −
trnP-UGG · NC_067682.1 · 66,120–66,193 bp · −
rpl20 · NC_067682.1 · 67,965–68,351 bp · −
rps12 · NC_067682.1 · 69,083–69,196 bp · −
rps12 · NC_067682.1 · 96,447–97,240 bp · −
clpP · NC_067682.1 · 69,315–71,237 bp · −
psbN · NC_067682.1 · 73,588–73,719 bp · −
rpoA · NC_067682.1 · 77,093–78,100 bp · −
rps11 · NC_067682.1 · 78,172–78,588 bp · −
rpl36 · NC_067682.1 · 78,698–78,811 bp · −
infA · NC_067682.1 · 78,900–79,133 bp · −
rps8 · NC_067682.1 · 79,259–79,663 bp · −
rpl14 · NC_067682.1 · 79,835–80,203 bp · −
rpl16 · NC_067682.1 · 80,338–81,605 bp · −
rps3 · NC_067682.1 · 81,758–82,420 bp · −
rpl22 · NC_067682.1 · 82,405–82,878 bp · −
rps19 · NC_067682.1 · 82,943–83,221 bp · −
rpl2 · NC_067682.1 · 83,290–84,768 bp · −
rpl23 · NC_067682.1 · 84,787–85,068 bp · −
trnI-CAU · NC_067682.1 · 85,234–85,307 bp · −
trnL-CAA · NC_067682.1 · 92,805–92,885 bp · −
ndhB · NC_067682.1 · 93,448–95,655 bp · −
rps7 · NC_067682.1 · 95,926–96,393 bp · −
trnN-GUU · NC_067682.1 · 107,401–107,472 bp · −
ndhF · NC_067682.1 · 108,837–111,068 bp · −
ndhD · NC_067682.1 · 113,842–115,371 bp · −
psaC · NC_067682.1 · 115,462–115,707 bp · −
ndhE · NC_067682.1 · 115,963–116,268 bp · −
ndhG · NC_067682.1 · 116,483–117,013 bp · −
ndhI · NC_067682.1 · 117,382–117,888 bp · −
ndhA · NC_067682.1 · 117,969–120,078 bp · −
ndhH · NC_067682.1 · 120,080–121,261 bp · −
rps15 · NC_067682.1 · 121,376–121,639 bp · −
ycf1 · NC_067682.1 · 122,079–127,634 bp · −
trnR-ACG · NC_067682.1 · 128,619–128,692 bp · −
rrn5 · NC_067682.1 · 128,936–129,056 bp · −
rrn4.5 · NC_067682.1 · 129,312–129,414 bp · −
rrn23 · NC_067682.1 · 129,513–132,323 bp · −
trnA-UGC · NC_067682.1 · 132,487–133,365 bp · −
trnI-GAU · NC_067682.1 · 133,430–134,448 bp · −
rrn16 · NC_067682.1 · 134,746–136,236 bp · −
trnV-GAC · NC_067682.1 · 136,463–136,534 bp · −
ycf15 · NC_067682.1 · 142,903–143,052 bp · −
ycf2 · NC_067682.1 · 143,242–150,045 bp · −
psbK · NC_067682.1 · 7,184–7,369 bp · +
psbI · NC_067682.1 · 7,760–7,870 bp · +
trnG-UCC · NC_067682.1 · 8,774–9,533 bp · +
trnR-UCU · NC_067682.1 · 9,723–9,794 bp · +
trnC-GCA · NC_067682.1 · 27,756–27,826 bp · +
petN · NC_067682.1 · 27,989–28,078 bp · +
trnT-GGU · NC_067682.1 · 30,701–30,772 bp · +
psbD · NC_067682.1 · 32,145–33,206 bp · +
psbC · NC_067682.1 · 33,154–34,575 bp · +
psbZ · NC_067682.1 · 35,244–35,432 bp · +
trnG-GCC · NC_067682.1 · 35,670–35,740 bp · +
trnS-GGA · NC_067682.1 · 44,643–44,729 bp · +
trnL-UAA · NC_067682.1 · 46,812–47,355 bp · +
trnF-GAA · NC_067682.1 · 47,655–47,727 bp · +
trnM-CAU · NC_067682.1 · 51,848–51,920 bp · +
rbcL · NC_067682.1 · 54,819–56,264 bp · +
accD · NC_067682.1 · 56,947–58,428 bp · +
psaI · NC_067682.1 · 59,125–59,235 bp · +
ycf4 · NC_067682.1 · 59,681–60,235 bp · +
cemA · NC_067682.1 · 60,821–61,510 bp · +
petA · NC_067682.1 · 61,725–62,687 bp · +
petL · NC_067682.1 · 65,371–65,466 bp · +
petG · NC_067682.1 · 65,641–65,754 bp · +
psaJ · NC_067682.1 · 66,477–66,611 bp · +
rpl33 · NC_067682.1 · 67,059–67,259 bp · +
rps18 · NC_067682.1 · 67,426–67,731 bp · +
rps12 · NC_067682.1 · 138,207–139,000 bp · +
psbB · NC_067682.1 · 71,710–73,236 bp · +
psbT · NC_067682.1 · 73,421–73,522 bp · +
psbH · NC_067682.1 · 73,825–74,043 bp · +
petB · NC_067682.1 · 74,178–75,534 bp · +
petD · NC_067682.1 · 75,723–76,916 bp · +
ycf2 · NC_067682.1 · 85,402–92,205 bp · +
ycf15 · NC_067682.1 · 92,395–92,544 bp · +
trnV-GAC · NC_067682.1 · 98,913–98,984 bp · +
rrn16 · NC_067682.1 · 99,211–100,701 bp · +
trnI-GAU · NC_067682.1 · 100,999–102,017 bp · +
trnA-UGC · NC_067682.1 · 102,082–102,960 bp · +
rrn23 · NC_067682.1 · 103,124–105,934 bp · +
rrn4.5 · NC_067682.1 · 106,033–106,135 bp · +
rrn5 · NC_067682.1 · 106,391–106,511 bp · +
trnR-ACG · NC_067682.1 · 106,755–106,828 bp · +
ycf1 · NC_067682.1 · 107,813–108,943 bp · +
rpl32 · NC_067682.1 · 111,553–111,723 bp · +
trnL-UAG · NC_067682.1 · 112,480–112,559 bp · +
ccsA · NC_067682.1 · 112,647–113,618 bp · +
trnN-GUU · NC_067682.1 · 127,975–128,046 bp · +
rps7 · NC_067682.1 · 139,054–139,521 bp · +
ndhB · NC_067682.1 · 139,792–141,999 bp · +
trnL-CAA · NC_067682.1 · 142,562–142,647 bp · +
trnI-CAU · NC_067682.1 · 150,140–150,213 bp · +
rpl23 · NC_067682.1 · 150,379–150,660 bp · +
rpl2 · NC_067682.1 · 150,679–152,157 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Isodon scrophularioides
ANNOTATED PLASTOME
NC_067682.1
152,268 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
ATP synthase
Ribosomal protein
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38067 76134 114201 152268 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK ON967_pgp086 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 11 85 75 Locate
psbA gene − 317 1375 1059 Locate
trnK-UUU gene − 1607 4187 2581 Locate
matK gene − 1927 3447 1521 Locate
ON967_pgp086 gene − 4725 5866 1142 Locate
trnQ-UUG gene − 6718 6789 72 Locate
psbK gene + 7184 7369 186 Locate
psbI gene + 7760 7870 111 Locate
trnS-GCU gene − 8025 8112 88 Locate
trnG-UCC gene + 8774 9533 760 Locate
trnR-UCU gene + 9723 9794 72 Locate
atpA gene − 9899 11422 1524 Locate
atpF gene − 11523 12770 1248 Locate
atpH gene − 13062 13307 246 Locate
atpI gene − 14246 14989 744 Locate
rps2 gene − 15215 15925 711 Locate
rpoC2 gene − 16140 20327 4188 Locate
rpoC1 gene − 20492 23325 2834 Locate
rpoB gene − 23352 26564 3213 Locate
trnC-GCA gene + 27756 27826 71 Locate
petN gene + 27989 28078 90 Locate
psbM gene − 29085 29189 105 Locate
trnD-GUC gene − 29708 29781 74 Locate
trnY-GUA gene − 29892 29975 84 Locate
trnE-UUC gene − 30053 30125 73 Locate
trnT-GGU gene + 30701 30772 72 Locate
psbD gene + 32145 33206 1062 Locate
psbC gene + 33154 34575 1422 Locate
trnS-UGA gene − 34811 34903 93 Locate
psbZ gene + 35244 35432 189 Locate
trnG-GCC gene + 35670 35740 71 Locate
trnfM-CAU gene − 35912 35985 74 Locate
rps14 gene − 36130 36432 303 Locate
psaB gene − 36555 38759 2205 Locate
psaA gene − 38785 41037 2253 Locate
ycf3 gene − 41837 43798 1962 Locate
trnS-GGA gene + 44643 44729 87 Locate
rps4 gene − 45026 45631 606 Locate
trnT-UGU gene − 46046 46118 73 Locate
trnL-UAA gene + 46812 47355 544 Locate
trnF-GAA gene + 47655 47727 73 Locate
ndhJ gene − 48405 48881 477 Locate
ndhK gene − 48992 49669 678 Locate
ndhC gene − 49721 50083 363 Locate
trnV-UAC gene − 51010 51667 658 Locate
trnM-CAU gene + 51848 51920 73 Locate
atpE gene − 52126 52527 402 Locate
atpB gene − 52524 54020 1497 Locate
rbcL gene + 54819 56264 1446 Locate
accD gene + 56947 58428 1482 Locate
psaI gene + 59125 59235 111 Locate
ycf4 gene + 59681 60235 555 Locate
cemA gene + 60821 61510 690 Locate
petA gene + 61725 62687 963 Locate
psbJ gene − 63695 63817 123 Locate
psbL gene − 63952 64068 117 Locate
psbF gene − 64092 64211 120 Locate
psbE gene − 64226 64477 252 Locate
petL gene + 65371 65466 96 Locate
petG gene + 65641 65754 114 Locate
trnW-CCA gene − 65877 65950 74 Locate
trnP-UGG gene − 66120 66193 74 Locate
psaJ gene + 66477 66611 135 Locate
rpl33 gene + 67059 67259 201 Locate
rps18 gene + 67426 67731 306 Locate
rpl20 gene − 67965 68351 387 Locate
rps12 gene − 69083 69196 114 Locate
clpP gene − 69315 71237 1923 Locate
psbB gene + 71710 73236 1527 Locate
psbT gene + 73421 73522 102 Locate
psbN gene − 73588 73719 132 Locate
psbH gene + 73825 74043 219 Locate
petB gene + 74178 75534 1357 Locate
petD gene + 75723 76916 1194 Locate
rpoA gene − 77093 78100 1008 Locate
rps11 gene − 78172 78588 417 Locate
rpl36 gene − 78698 78811 114 Locate
infA gene − 78900 79133 234 Locate
rps8 gene − 79259 79663 405 Locate
rpl14 gene − 79835 80203 369 Locate
rpl16 gene − 80338 81605 1268 Locate
rps3 gene − 81758 82420 663 Locate
rpl22 gene − 82405 82878 474 Locate
rps19 gene − 82943 83221 279 Locate
rpl2 gene − 83290 84768 1479 Locate
rpl23 gene − 84787 85068 282 Locate
trnI-CAU gene − 85234 85307 74 Locate
ycf2 gene + 85402 92205 6804 Locate
ycf15 gene + 92395 92544 150 Locate
trnL-CAA gene − 92805 92885 81 Locate
ndhB gene − 93448 95655 2208 Locate
rps7 gene − 95926 96393 468 Locate
rps12 gene − 96447 97240 794 Locate
trnV-GAC gene + 98913 98984 72 Locate
rrn16 gene + 99211 100701 1491 Locate
trnI-GAU gene + 100999 102017 1019 Locate
trnA-UGC gene + 102082 102960 879 Locate
rrn23 gene + 103124 105934 2811 Locate
rrn4.5 gene + 106033 106135 103 Locate
rrn5 gene + 106391 106511 121 Locate
trnR-ACG gene + 106755 106828 74 Locate
trnN-GUU gene − 107401 107472 72 Locate
ycf1 gene + 107813 108943 1131 Locate
ndhF gene − 108837 111068 2232 Locate
rpl32 gene + 111553 111723 171 Locate
trnL-UAG gene + 112480 112559 80 Locate
ccsA gene + 112647 113618 972 Locate
ndhD gene − 113842 115371 1530 Locate
psaC gene − 115462 115707 246 Locate
ndhE gene − 115963 116268 306 Locate
ndhG gene − 116483 117013 531 Locate
ndhI gene − 117382 117888 507 Locate
ndhA gene − 117969 120078 2110 Locate
ndhH gene − 120080 121261 1182 Locate
rps15 gene − 121376 121639 264 Locate
ycf1 gene − 122079 127634 5556 Locate
trnN-GUU gene + 127975 128046 72 Locate
trnR-ACG gene − 128619 128692 74 Locate
rrn5 gene − 128936 129056 121 Locate
rrn4.5 gene − 129312 129414 103 Locate
rrn23 gene − 129513 132323 2811 Locate
trnA-UGC gene − 132487 133365 879 Locate
trnI-GAU gene − 133430 134448 1019 Locate
rrn16 gene − 134746 136236 1491 Locate
trnV-GAC gene − 136463 136534 72 Locate
rps12 gene + 138207 139000 794 Locate
rps7 gene + 139054 139521 468 Locate
ndhB gene + 139792 141999 2208 Locate
trnL-CAA gene + 142562 142647 86 Locate
ycf15 gene − 142903 143052 150 Locate
ycf2 gene − 143242 150045 6804 Locate
trnI-CAU gene + 150140 150213 74 Locate
rpl23 gene + 150379 150660 282 Locate
rpl2 gene + 150679 152157 1479 Locate
Status Available
Accession NC_067682.1
Length 152,268 bp
GC content 37.6%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 16 Atp Synthase 6 Ribosomal Protein 25 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources