Isodon secundiflorus chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · NC_067703.1 · 11–85 bp · −
psbA · NC_067703.1 · 389–1,447 bp · −
trnK-UUU · NC_067703.1 · 1,679–4,259 bp · −
matK · NC_067703.1 · 1,999–3,519 bp · −
OOA38_pgp086 · NC_067703.1 · 4,792–5,937 bp · −
trnQ-UUG · NC_067703.1 · 6,883–6,954 bp · −
trnS-GCU · NC_067703.1 · 8,186–8,273 bp · −
atpA · NC_067703.1 · 10,160–11,683 bp · −
atpF · NC_067703.1 · 11,787–13,032 bp · −
atpH · NC_067703.1 · 13,324–13,569 bp · −
atpI · NC_067703.1 · 14,573–15,316 bp · −
rps2 · NC_067703.1 · 15,542–16,252 bp · −
rpoC2 · NC_067703.1 · 16,469–20,641 bp · −
rpoC1 · NC_067703.1 · 20,806–23,639 bp · −
rpoB · NC_067703.1 · 23,666–26,878 bp · −
psbM · NC_067703.1 · 29,389–29,493 bp · −
trnD-GUC · NC_067703.1 · 30,012–30,085 bp · −
trnY-GUA · NC_067703.1 · 30,196–30,279 bp · −
trnE-UUC · NC_067703.1 · 30,357–30,429 bp · −
trnS-UGA · NC_067703.1 · 35,096–35,188 bp · −
trnfM-CAU · NC_067703.1 · 36,224–36,297 bp · −
rps14 · NC_067703.1 · 36,443–36,745 bp · −
psaB · NC_067703.1 · 36,868–39,072 bp · −
psaA · NC_067703.1 · 39,098–41,350 bp · −
ycf3 · NC_067703.1 · 42,154–44,101 bp · −
rps4 · NC_067703.1 · 45,348–45,953 bp · −
trnT-UGU · NC_067703.1 · 46,377–46,449 bp · −
ndhJ · NC_067703.1 · 48,713–49,189 bp · −
ndhK · NC_067703.1 · 49,300–49,977 bp · −
ndhC · NC_067703.1 · 50,029–50,391 bp · −
trnV-UAC · NC_067703.1 · 51,348–52,003 bp · −
atpE · NC_067703.1 · 52,457–52,858 bp · −
atpB · NC_067703.1 · 52,855–54,351 bp · −
psbJ · NC_067703.1 · 64,060–64,182 bp · −
psbL · NC_067703.1 · 64,317–64,433 bp · −
psbF · NC_067703.1 · 64,457–64,576 bp · −
psbE · NC_067703.1 · 64,591–64,842 bp · −
trnW-CCA · NC_067703.1 · 66,241–66,314 bp · −
trnP-UGG · NC_067703.1 · 66,483–66,556 bp · −
rpl20 · NC_067703.1 · 68,340–68,726 bp · −
rps12 · NC_067703.1 · 69,460–69,573 bp · −
rps12 · NC_067703.1 · 96,870–97,662 bp · −
clpP · NC_067703.1 · 69,692–71,603 bp · −
psbN · NC_067703.1 · 73,955–74,086 bp · −
rpoA · NC_067703.1 · 77,459–78,466 bp · −
rps11 · NC_067703.1 · 78,538–78,954 bp · −
rpl36 · NC_067703.1 · 79,070–79,183 bp · −
infA · NC_067703.1 · 79,279–79,512 bp · −
rps8 · NC_067703.1 · 79,638–80,042 bp · −
rpl14 · NC_067703.1 · 80,233–80,601 bp · −
rpl16 · NC_067703.1 · 80,735–82,002 bp · −
rps3 · NC_067703.1 · 82,146–82,808 bp · −
rpl22 · NC_067703.1 · 82,793–83,266 bp · −
rps19 · NC_067703.1 · 83,331–83,609 bp · −
rpl2 · NC_067703.1 · 83,677–85,155 bp · −
rpl23 · NC_067703.1 · 85,174–85,455 bp · −
trnI-CAU · NC_067703.1 · 85,621–85,694 bp · −
trnL-CAA · NC_067703.1 · 93,219–93,299 bp · −
ndhB · NC_067703.1 · 93,871–96,078 bp · −
rps7 · NC_067703.1 · 96,349–96,816 bp · −
trnN-GUU · NC_067703.1 · 107,814–107,885 bp · −
ndhF · NC_067703.1 · 109,251–111,482 bp · −
ndhD · NC_067703.1 · 114,256–115,785 bp · −
psaC · NC_067703.1 · 115,876–116,121 bp · −
ndhE · NC_067703.1 · 116,377–116,682 bp · −
ndhG · NC_067703.1 · 116,897–117,427 bp · −
ndhI · NC_067703.1 · 117,788–118,294 bp · −
ndhA · NC_067703.1 · 118,375–120,498 bp · −
ndhH · NC_067703.1 · 120,500–121,681 bp · −
rps15 · NC_067703.1 · 121,796–122,068 bp · −
ycf1 · NC_067703.1 · 122,498–128,020 bp · −
trnR-ACG · NC_067703.1 · 129,000–129,073 bp · −
rrn5 · NC_067703.1 · 129,317–129,437 bp · −
rrn4.5 · NC_067703.1 · 129,693–129,795 bp · −
rrn23 · NC_067703.1 · 129,894–132,704 bp · −
trnA-UGC · NC_067703.1 · 132,876–133,754 bp · −
trnI-GAU · NC_067703.1 · 133,819–134,837 bp · −
rrn16 · NC_067703.1 · 135,135–136,625 bp · −
trnV-GAC · NC_067703.1 · 136,852–136,923 bp · −
ycf15 · NC_067703.1 · 143,289–143,438 bp · −
ycf2 · NC_067703.1 · 143,628–150,458 bp · −
psbK · NC_067703.1 · 7,348–7,533 bp · +
psbI · NC_067703.1 · 7,920–8,030 bp · +
trnG-UCC · NC_067703.1 · 9,035–9,794 bp · +
trnR-UCU · NC_067703.1 · 9,985–10,056 bp · +
trnC-GCA · NC_067703.1 · 28,068–28,138 bp · +
petN · NC_067703.1 · 28,301–28,390 bp · +
trnT-GGU · NC_067703.1 · 31,039–31,110 bp · +
psbD · NC_067703.1 · 32,428–33,489 bp · +
psbC · NC_067703.1 · 33,437–34,858 bp · +
psbZ · NC_067703.1 · 35,529–35,717 bp · +
trnG-GCC · NC_067703.1 · 35,962–36,032 bp · +
trnS-GGA · NC_067703.1 · 44,965–45,051 bp · +
trnL-UAA · NC_067703.1 · 47,136–47,679 bp · +
trnF-GAA · NC_067703.1 · 47,973–48,045 bp · +
trnM-CAU · NC_067703.1 · 52,184–52,256 bp · +
rbcL · NC_067703.1 · 55,143–56,576 bp · +
accD · NC_067703.1 · 57,272–58,753 bp · +
psaI · NC_067703.1 · 59,454–59,564 bp · +
ycf4 · NC_067703.1 · 60,011–60,565 bp · +
cemA · NC_067703.1 · 61,156–61,845 bp · +
petA · NC_067703.1 · 62,060–63,022 bp · +
petL · NC_067703.1 · 65,735–65,830 bp · +
petG · NC_067703.1 · 66,005–66,118 bp · +
psaJ · NC_067703.1 · 66,838–66,972 bp · +
rpl33 · NC_067703.1 · 67,434–67,634 bp · +
rps18 · NC_067703.1 · 67,801–68,106 bp · +
rps12 · NC_067703.1 · 138,585–139,377 bp · +
psbB · NC_067703.1 · 72,076–73,602 bp · +
psbT · NC_067703.1 · 73,788–73,889 bp · +
psbH · NC_067703.1 · 74,192–74,410 bp · +
petB · NC_067703.1 · 74,536–75,901 bp · +
petD · NC_067703.1 · 76,090–77,282 bp · +
ycf2 · NC_067703.1 · 85,789–92,619 bp · +
ycf15 · NC_067703.1 · 92,809–92,958 bp · +
trnV-GAC · NC_067703.1 · 99,324–99,395 bp · +
rrn16 · NC_067703.1 · 99,622–101,112 bp · +
trnI-GAU · NC_067703.1 · 101,410–102,428 bp · +
trnA-UGC · NC_067703.1 · 102,493–103,371 bp · +
rrn23 · NC_067703.1 · 103,543–106,353 bp · +
rrn4.5 · NC_067703.1 · 106,452–106,554 bp · +
rrn5 · NC_067703.1 · 106,810–106,930 bp · +
trnR-ACG · NC_067703.1 · 107,174–107,247 bp · +
ycf1 · NC_067703.1 · 108,227–109,357 bp · +
rpl32 · NC_067703.1 · 111,951–112,121 bp · +
trnL-UAG · NC_067703.1 · 112,885–112,964 bp · +
ccsA · NC_067703.1 · 113,053–114,024 bp · +
trnN-GUU · NC_067703.1 · 128,362–128,433 bp · +
rps7 · NC_067703.1 · 139,431–139,898 bp · +
ndhB · NC_067703.1 · 140,169–142,376 bp · +
trnL-CAA · NC_067703.1 · 142,948–143,028 bp · +
trnI-CAU · NC_067703.1 · 150,553–150,626 bp · +
rpl23 · NC_067703.1 · 150,792–151,073 bp · +
rpl2 · NC_067703.1 · 151,092–152,570 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Isodon secundiflorus
ANNOTATED PLASTOME
NC_067703.1
152,680 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
ATP synthase
Ribosomal protein
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38170 76340 114510 152680 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK OOA38_pgp086 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 11 85 75 Locate
psbA gene − 389 1447 1059 Locate
trnK-UUU gene − 1679 4259 2581 Locate
matK gene − 1999 3519 1521 Locate
OOA38_pgp086 gene − 4792 5937 1146 Locate
trnQ-UUG gene − 6883 6954 72 Locate
psbK gene + 7348 7533 186 Locate
psbI gene + 7920 8030 111 Locate
trnS-GCU gene − 8186 8273 88 Locate
trnG-UCC gene + 9035 9794 760 Locate
trnR-UCU gene + 9985 10056 72 Locate
atpA gene − 10160 11683 1524 Locate
atpF gene − 11787 13032 1246 Locate
atpH gene − 13324 13569 246 Locate
atpI gene − 14573 15316 744 Locate
rps2 gene − 15542 16252 711 Locate
rpoC2 gene − 16469 20641 4173 Locate
rpoC1 gene − 20806 23639 2834 Locate
rpoB gene − 23666 26878 3213 Locate
trnC-GCA gene + 28068 28138 71 Locate
petN gene + 28301 28390 90 Locate
psbM gene − 29389 29493 105 Locate
trnD-GUC gene − 30012 30085 74 Locate
trnY-GUA gene − 30196 30279 84 Locate
trnE-UUC gene − 30357 30429 73 Locate
trnT-GGU gene + 31039 31110 72 Locate
psbD gene + 32428 33489 1062 Locate
psbC gene + 33437 34858 1422 Locate
trnS-UGA gene − 35096 35188 93 Locate
psbZ gene + 35529 35717 189 Locate
trnG-GCC gene + 35962 36032 71 Locate
trnfM-CAU gene − 36224 36297 74 Locate
rps14 gene − 36443 36745 303 Locate
psaB gene − 36868 39072 2205 Locate
psaA gene − 39098 41350 2253 Locate
ycf3 gene − 42154 44101 1948 Locate
trnS-GGA gene + 44965 45051 87 Locate
rps4 gene − 45348 45953 606 Locate
trnT-UGU gene − 46377 46449 73 Locate
trnL-UAA gene + 47136 47679 544 Locate
trnF-GAA gene + 47973 48045 73 Locate
ndhJ gene − 48713 49189 477 Locate
ndhK gene − 49300 49977 678 Locate
ndhC gene − 50029 50391 363 Locate
trnV-UAC gene − 51348 52003 656 Locate
trnM-CAU gene + 52184 52256 73 Locate
atpE gene − 52457 52858 402 Locate
atpB gene − 52855 54351 1497 Locate
rbcL gene + 55143 56576 1434 Locate
accD gene + 57272 58753 1482 Locate
psaI gene + 59454 59564 111 Locate
ycf4 gene + 60011 60565 555 Locate
cemA gene + 61156 61845 690 Locate
petA gene + 62060 63022 963 Locate
psbJ gene − 64060 64182 123 Locate
psbL gene − 64317 64433 117 Locate
psbF gene − 64457 64576 120 Locate
psbE gene − 64591 64842 252 Locate
petL gene + 65735 65830 96 Locate
petG gene + 66005 66118 114 Locate
trnW-CCA gene − 66241 66314 74 Locate
trnP-UGG gene − 66483 66556 74 Locate
psaJ gene + 66838 66972 135 Locate
rpl33 gene + 67434 67634 201 Locate
rps18 gene + 67801 68106 306 Locate
rpl20 gene − 68340 68726 387 Locate
rps12 gene − 69460 69573 114 Locate
clpP gene − 69692 71603 1912 Locate
psbB gene + 72076 73602 1527 Locate
psbT gene + 73788 73889 102 Locate
psbN gene − 73955 74086 132 Locate
psbH gene + 74192 74410 219 Locate
petB gene + 74536 75901 1366 Locate
petD gene + 76090 77282 1193 Locate
rpoA gene − 77459 78466 1008 Locate
rps11 gene − 78538 78954 417 Locate
rpl36 gene − 79070 79183 114 Locate
infA gene − 79279 79512 234 Locate
rps8 gene − 79638 80042 405 Locate
rpl14 gene − 80233 80601 369 Locate
rpl16 gene − 80735 82002 1268 Locate
rps3 gene − 82146 82808 663 Locate
rpl22 gene − 82793 83266 474 Locate
rps19 gene − 83331 83609 279 Locate
rpl2 gene − 83677 85155 1479 Locate
rpl23 gene − 85174 85455 282 Locate
trnI-CAU gene − 85621 85694 74 Locate
ycf2 gene + 85789 92619 6831 Locate
ycf15 gene + 92809 92958 150 Locate
trnL-CAA gene − 93219 93299 81 Locate
ndhB gene − 93871 96078 2208 Locate
rps7 gene − 96349 96816 468 Locate
rps12 gene − 96870 97662 793 Locate
trnV-GAC gene + 99324 99395 72 Locate
rrn16 gene + 99622 101112 1491 Locate
trnI-GAU gene + 101410 102428 1019 Locate
trnA-UGC gene + 102493 103371 879 Locate
rrn23 gene + 103543 106353 2811 Locate
rrn4.5 gene + 106452 106554 103 Locate
rrn5 gene + 106810 106930 121 Locate
trnR-ACG gene + 107174 107247 74 Locate
trnN-GUU gene − 107814 107885 72 Locate
ycf1 gene + 108227 109357 1131 Locate
ndhF gene − 109251 111482 2232 Locate
rpl32 gene + 111951 112121 171 Locate
trnL-UAG gene + 112885 112964 80 Locate
ccsA gene + 113053 114024 972 Locate
ndhD gene − 114256 115785 1530 Locate
psaC gene − 115876 116121 246 Locate
ndhE gene − 116377 116682 306 Locate
ndhG gene − 116897 117427 531 Locate
ndhI gene − 117788 118294 507 Locate
ndhA gene − 118375 120498 2124 Locate
ndhH gene − 120500 121681 1182 Locate
rps15 gene − 121796 122068 273 Locate
ycf1 gene − 122498 128020 5523 Locate
trnN-GUU gene + 128362 128433 72 Locate
trnR-ACG gene − 129000 129073 74 Locate
rrn5 gene − 129317 129437 121 Locate
rrn4.5 gene − 129693 129795 103 Locate
rrn23 gene − 129894 132704 2811 Locate
trnA-UGC gene − 132876 133754 879 Locate
trnI-GAU gene − 133819 134837 1019 Locate
rrn16 gene − 135135 136625 1491 Locate
trnV-GAC gene − 136852 136923 72 Locate
rps12 gene + 138585 139377 793 Locate
rps7 gene + 139431 139898 468 Locate
ndhB gene + 140169 142376 2208 Locate
trnL-CAA gene + 142948 143028 81 Locate
ycf15 gene − 143289 143438 150 Locate
ycf2 gene − 143628 150458 6831 Locate
trnI-CAU gene + 150553 150626 74 Locate
rpl23 gene + 150792 151073 282 Locate
rpl2 gene + 151092 152570 1479 Locate
Status Available
Accession NC_067703.1
Length 152,680 bp
GC content 37.6%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 16 Atp Synthase 6 Ribosomal Protein 25 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources