Isodon setschwanensis chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · NC_067702.1 · 11–85 bp · −
psbA · NC_067702.1 · 389–1,447 bp · −
trnK-UUU · NC_067702.1 · 1,679–4,259 bp · −
matK · NC_067702.1 · 1,999–3,519 bp · −
ON843_pgp086 · NC_067702.1 · 4,785–5,930 bp · −
trnQ-UUG · NC_067702.1 · 6,875–6,946 bp · −
trnS-GCU · NC_067702.1 · 8,178–8,265 bp · −
atpA · NC_067702.1 · 10,154–11,677 bp · −
atpF · NC_067702.1 · 11,791–13,044 bp · −
atpH · NC_067702.1 · 13,340–13,585 bp · −
atpI · NC_067702.1 · 14,595–15,338 bp · −
rps2 · NC_067702.1 · 15,564–16,274 bp · −
rpoC2 · NC_067702.1 · 16,492–20,673 bp · −
rpoC1 · NC_067702.1 · 20,838–23,671 bp · −
rpoB · NC_067702.1 · 23,698–26,910 bp · −
psbM · NC_067702.1 · 29,413–29,517 bp · −
trnD-GUC · NC_067702.1 · 30,036–30,109 bp · −
trnY-GUA · NC_067702.1 · 30,220–30,303 bp · −
trnE-UUC · NC_067702.1 · 30,381–30,453 bp · −
trnS-UGA · NC_067702.1 · 35,109–35,201 bp · −
trnfM-CAU · NC_067702.1 · 36,235–36,308 bp · −
rps14 · NC_067702.1 · 36,454–36,756 bp · −
psaB · NC_067702.1 · 36,879–39,083 bp · −
psaA · NC_067702.1 · 39,109–41,361 bp · −
ycf3 · NC_067702.1 · 42,134–44,081 bp · −
rps4 · NC_067702.1 · 45,328–45,933 bp · −
trnT-UGU · NC_067702.1 · 46,328–46,400 bp · −
ndhJ · NC_067702.1 · 48,685–49,161 bp · −
ndhK · NC_067702.1 · 49,272–49,949 bp · −
ndhC · NC_067702.1 · 50,001–50,363 bp · −
trnV-UAC · NC_067702.1 · 51,320–51,975 bp · −
atpE · NC_067702.1 · 52,429–52,830 bp · −
atpB · NC_067702.1 · 52,827–54,323 bp · −
psbJ · NC_067702.1 · 64,029–64,151 bp · −
psbL · NC_067702.1 · 64,286–64,402 bp · −
psbF · NC_067702.1 · 64,426–64,545 bp · −
psbE · NC_067702.1 · 64,560–64,811 bp · −
trnW-CCA · NC_067702.1 · 66,210–66,283 bp · −
trnP-UGG · NC_067702.1 · 66,452–66,525 bp · −
rpl20 · NC_067702.1 · 68,312–68,698 bp · −
rps12 · NC_067702.1 · 69,433–69,546 bp · −
rps12 · NC_067702.1 · 96,839–97,631 bp · −
clpP · NC_067702.1 · 69,665–71,582 bp · −
psbN · NC_067702.1 · 73,933–74,064 bp · −
rpoA · NC_067702.1 · 77,438–78,445 bp · −
rps11 · NC_067702.1 · 78,517–78,933 bp · −
rpl36 · NC_067702.1 · 79,049–79,162 bp · −
infA · NC_067702.1 · 79,258–79,491 bp · −
rps8 · NC_067702.1 · 79,617–80,021 bp · −
rpl14 · NC_067702.1 · 80,204–80,572 bp · −
rpl16 · NC_067702.1 · 80,706–81,971 bp · −
rps3 · NC_067702.1 · 82,115–82,777 bp · −
rpl22 · NC_067702.1 · 82,762–83,235 bp · −
rps19 · NC_067702.1 · 83,300–83,578 bp · −
rpl2 · NC_067702.1 · 83,646–85,124 bp · −
rpl23 · NC_067702.1 · 85,143–85,424 bp · −
trnI-CAU · NC_067702.1 · 85,590–85,663 bp · −
trnL-CAA · NC_067702.1 · 93,188–93,268 bp · −
ndhB · NC_067702.1 · 93,840–96,047 bp · −
rps7 · NC_067702.1 · 96,318–96,785 bp · −
trnN-GUU · NC_067702.1 · 107,783–107,854 bp · −
ndhF · NC_067702.1 · 109,220–111,451 bp · −
ndhD · NC_067702.1 · 114,240–115,769 bp · −
psaC · NC_067702.1 · 115,860–116,105 bp · −
ndhE · NC_067702.1 · 116,361–116,666 bp · −
ndhG · NC_067702.1 · 116,881–117,411 bp · −
ndhI · NC_067702.1 · 117,772–118,278 bp · −
ndhA · NC_067702.1 · 118,359–120,481 bp · −
ndhH · NC_067702.1 · 120,483–121,664 bp · −
rps15 · NC_067702.1 · 121,779–122,051 bp · −
ycf1 · NC_067702.1 · 122,481–128,009 bp · −
trnR-ACG · NC_067702.1 · 128,989–129,062 bp · −
rrn5 · NC_067702.1 · 129,306–129,426 bp · −
rrn4.5 · NC_067702.1 · 129,682–129,784 bp · −
rrn23 · NC_067702.1 · 129,883–132,693 bp · −
trnA-UGC · NC_067702.1 · 132,865–133,743 bp · −
trnI-GAU · NC_067702.1 · 133,808–134,826 bp · −
rrn16 · NC_067702.1 · 135,124–136,614 bp · −
trnV-GAC · NC_067702.1 · 136,841–136,912 bp · −
ycf15 · NC_067702.1 · 143,278–143,427 bp · −
ycf2 · NC_067702.1 · 143,617–150,447 bp · −
psbK · NC_067702.1 · 7,340–7,525 bp · +
psbI · NC_067702.1 · 7,913–8,023 bp · +
trnG-UCC · NC_067702.1 · 9,028–9,788 bp · +
trnR-UCU · NC_067702.1 · 9,979–10,050 bp · +
trnC-GCA · NC_067702.1 · 28,100–28,170 bp · +
petN · NC_067702.1 · 28,333–28,422 bp · +
trnT-GGU · NC_067702.1 · 31,063–31,134 bp · +
psbD · NC_067702.1 · 32,443–33,504 bp · +
psbC · NC_067702.1 · 33,452–34,873 bp · +
psbZ · NC_067702.1 · 35,542–35,730 bp · +
trnG-GCC · NC_067702.1 · 35,975–36,045 bp · +
trnS-GGA · NC_067702.1 · 44,945–45,031 bp · +
trnL-UAA · NC_067702.1 · 47,087–47,651 bp · +
trnF-GAA · NC_067702.1 · 47,945–48,017 bp · +
trnM-CAU · NC_067702.1 · 52,156–52,228 bp · +
rbcL · NC_067702.1 · 55,114–56,547 bp · +
accD · NC_067702.1 · 57,246–58,727 bp · +
psaI · NC_067702.1 · 59,428–59,538 bp · +
ycf4 · NC_067702.1 · 59,986–60,540 bp · +
cemA · NC_067702.1 · 61,124–61,813 bp · +
petA · NC_067702.1 · 62,028–62,990 bp · +
petL · NC_067702.1 · 65,704–65,799 bp · +
petG · NC_067702.1 · 65,974–66,087 bp · +
psaJ · NC_067702.1 · 66,807–66,941 bp · +
rpl33 · NC_067702.1 · 67,404–67,604 bp · +
rps18 · NC_067702.1 · 67,771–68,076 bp · +
rps12 · NC_067702.1 · 138,574–139,366 bp · +
psbB · NC_067702.1 · 72,055–73,581 bp · +
psbT · NC_067702.1 · 73,766–73,867 bp · +
psbH · NC_067702.1 · 74,170–74,388 bp · +
petB · NC_067702.1 · 74,514–75,880 bp · +
petD · NC_067702.1 · 76,069–77,261 bp · +
ycf2 · NC_067702.1 · 85,758–92,588 bp · +
ycf15 · NC_067702.1 · 92,778–92,927 bp · +
trnV-GAC · NC_067702.1 · 99,293–99,364 bp · +
rrn16 · NC_067702.1 · 99,591–101,081 bp · +
trnI-GAU · NC_067702.1 · 101,379–102,397 bp · +
trnA-UGC · NC_067702.1 · 102,462–103,340 bp · +
rrn23 · NC_067702.1 · 103,512–106,322 bp · +
rrn4.5 · NC_067702.1 · 106,421–106,523 bp · +
rrn5 · NC_067702.1 · 106,779–106,899 bp · +
trnR-ACG · NC_067702.1 · 107,143–107,216 bp · +
ycf1 · NC_067702.1 · 108,196–109,326 bp · +
rpl32 · NC_067702.1 · 111,934–112,104 bp · +
trnL-UAG · NC_067702.1 · 112,869–112,948 bp · +
ccsA · NC_067702.1 · 113,037–114,008 bp · +
trnN-GUU · NC_067702.1 · 128,351–128,422 bp · +
rps7 · NC_067702.1 · 139,420–139,887 bp · +
ndhB · NC_067702.1 · 140,158–142,365 bp · +
trnL-CAA · NC_067702.1 · 142,937–143,017 bp · +
trnI-CAU · NC_067702.1 · 150,542–150,615 bp · +
rpl23 · NC_067702.1 · 150,781–151,062 bp · +
rpl2 · NC_067702.1 · 151,081–152,559 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Isodon setschwanensis
ANNOTATED PLASTOME
NC_067702.1
152,669 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
ATP synthase
Ribosomal protein
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38167 76334 114502 152669 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK ON843_pgp086 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 11 85 75 Locate
psbA gene − 389 1447 1059 Locate
trnK-UUU gene − 1679 4259 2581 Locate
matK gene − 1999 3519 1521 Locate
ON843_pgp086 gene − 4785 5930 1146 Locate
trnQ-UUG gene − 6875 6946 72 Locate
psbK gene + 7340 7525 186 Locate
psbI gene + 7913 8023 111 Locate
trnS-GCU gene − 8178 8265 88 Locate
trnG-UCC gene + 9028 9788 761 Locate
trnR-UCU gene + 9979 10050 72 Locate
atpA gene − 10154 11677 1524 Locate
atpF gene − 11791 13044 1254 Locate
atpH gene − 13340 13585 246 Locate
atpI gene − 14595 15338 744 Locate
rps2 gene − 15564 16274 711 Locate
rpoC2 gene − 16492 20673 4182 Locate
rpoC1 gene − 20838 23671 2834 Locate
rpoB gene − 23698 26910 3213 Locate
trnC-GCA gene + 28100 28170 71 Locate
petN gene + 28333 28422 90 Locate
psbM gene − 29413 29517 105 Locate
trnD-GUC gene − 30036 30109 74 Locate
trnY-GUA gene − 30220 30303 84 Locate
trnE-UUC gene − 30381 30453 73 Locate
trnT-GGU gene + 31063 31134 72 Locate
psbD gene + 32443 33504 1062 Locate
psbC gene + 33452 34873 1422 Locate
trnS-UGA gene − 35109 35201 93 Locate
psbZ gene + 35542 35730 189 Locate
trnG-GCC gene + 35975 36045 71 Locate
trnfM-CAU gene − 36235 36308 74 Locate
rps14 gene − 36454 36756 303 Locate
psaB gene − 36879 39083 2205 Locate
psaA gene − 39109 41361 2253 Locate
ycf3 gene − 42134 44081 1948 Locate
trnS-GGA gene + 44945 45031 87 Locate
rps4 gene − 45328 45933 606 Locate
trnT-UGU gene − 46328 46400 73 Locate
trnL-UAA gene + 47087 47651 565 Locate
trnF-GAA gene + 47945 48017 73 Locate
ndhJ gene − 48685 49161 477 Locate
ndhK gene − 49272 49949 678 Locate
ndhC gene − 50001 50363 363 Locate
trnV-UAC gene − 51320 51975 656 Locate
trnM-CAU gene + 52156 52228 73 Locate
atpE gene − 52429 52830 402 Locate
atpB gene − 52827 54323 1497 Locate
rbcL gene + 55114 56547 1434 Locate
accD gene + 57246 58727 1482 Locate
psaI gene + 59428 59538 111 Locate
ycf4 gene + 59986 60540 555 Locate
cemA gene + 61124 61813 690 Locate
petA gene + 62028 62990 963 Locate
psbJ gene − 64029 64151 123 Locate
psbL gene − 64286 64402 117 Locate
psbF gene − 64426 64545 120 Locate
psbE gene − 64560 64811 252 Locate
petL gene + 65704 65799 96 Locate
petG gene + 65974 66087 114 Locate
trnW-CCA gene − 66210 66283 74 Locate
trnP-UGG gene − 66452 66525 74 Locate
psaJ gene + 66807 66941 135 Locate
rpl33 gene + 67404 67604 201 Locate
rps18 gene + 67771 68076 306 Locate
rpl20 gene − 68312 68698 387 Locate
rps12 gene − 69433 69546 114 Locate
clpP gene − 69665 71582 1918 Locate
psbB gene + 72055 73581 1527 Locate
psbT gene + 73766 73867 102 Locate
psbN gene − 73933 74064 132 Locate
psbH gene + 74170 74388 219 Locate
petB gene + 74514 75880 1367 Locate
petD gene + 76069 77261 1193 Locate
rpoA gene − 77438 78445 1008 Locate
rps11 gene − 78517 78933 417 Locate
rpl36 gene − 79049 79162 114 Locate
infA gene − 79258 79491 234 Locate
rps8 gene − 79617 80021 405 Locate
rpl14 gene − 80204 80572 369 Locate
rpl16 gene − 80706 81971 1266 Locate
rps3 gene − 82115 82777 663 Locate
rpl22 gene − 82762 83235 474 Locate
rps19 gene − 83300 83578 279 Locate
rpl2 gene − 83646 85124 1479 Locate
rpl23 gene − 85143 85424 282 Locate
trnI-CAU gene − 85590 85663 74 Locate
ycf2 gene + 85758 92588 6831 Locate
ycf15 gene + 92778 92927 150 Locate
trnL-CAA gene − 93188 93268 81 Locate
ndhB gene − 93840 96047 2208 Locate
rps7 gene − 96318 96785 468 Locate
rps12 gene − 96839 97631 793 Locate
trnV-GAC gene + 99293 99364 72 Locate
rrn16 gene + 99591 101081 1491 Locate
trnI-GAU gene + 101379 102397 1019 Locate
trnA-UGC gene + 102462 103340 879 Locate
rrn23 gene + 103512 106322 2811 Locate
rrn4.5 gene + 106421 106523 103 Locate
rrn5 gene + 106779 106899 121 Locate
trnR-ACG gene + 107143 107216 74 Locate
trnN-GUU gene − 107783 107854 72 Locate
ycf1 gene + 108196 109326 1131 Locate
ndhF gene − 109220 111451 2232 Locate
rpl32 gene + 111934 112104 171 Locate
trnL-UAG gene + 112869 112948 80 Locate
ccsA gene + 113037 114008 972 Locate
ndhD gene − 114240 115769 1530 Locate
psaC gene − 115860 116105 246 Locate
ndhE gene − 116361 116666 306 Locate
ndhG gene − 116881 117411 531 Locate
ndhI gene − 117772 118278 507 Locate
ndhA gene − 118359 120481 2123 Locate
ndhH gene − 120483 121664 1182 Locate
rps15 gene − 121779 122051 273 Locate
ycf1 gene − 122481 128009 5529 Locate
trnN-GUU gene + 128351 128422 72 Locate
trnR-ACG gene − 128989 129062 74 Locate
rrn5 gene − 129306 129426 121 Locate
rrn4.5 gene − 129682 129784 103 Locate
rrn23 gene − 129883 132693 2811 Locate
trnA-UGC gene − 132865 133743 879 Locate
trnI-GAU gene − 133808 134826 1019 Locate
rrn16 gene − 135124 136614 1491 Locate
trnV-GAC gene − 136841 136912 72 Locate
rps12 gene + 138574 139366 793 Locate
rps7 gene + 139420 139887 468 Locate
ndhB gene + 140158 142365 2208 Locate
trnL-CAA gene + 142937 143017 81 Locate
ycf15 gene − 143278 143427 150 Locate
ycf2 gene − 143617 150447 6831 Locate
trnI-CAU gene + 150542 150615 74 Locate
rpl23 gene + 150781 151062 282 Locate
rpl2 gene + 151081 152559 1479 Locate
Status Available
Accession NC_067702.1
Length 152,669 bp
GC content 37.6%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 16 Atp Synthase 6 Ribosomal Protein 25 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources