Isodon shikokianus var. occidentalis chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · ON858908.1 · 11–85 bp · −
psbA · ON858908.1 · 393–1,451 bp · −
trnK-UUU · ON858908.1 · 1,683–4,263 bp · −
matK · ON858908.1 · 2,003–3,523 bp · −
trnQ-UUG · ON858908.1 · 6,878–6,949 bp · −
trnS-GCU · ON858908.1 · 8,182–8,269 bp · −
atpA · ON858908.1 · 10,162–11,685 bp · −
atpF · ON858908.1 · 11,797–13,043 bp · −
atpH · ON858908.1 · 13,341–13,586 bp · −
atpI · ON858908.1 · 14,588–15,331 bp · −
rps2 · ON858908.1 · 15,557–16,267 bp · −
rpoC2 · ON858908.1 · 16,483–20,664 bp · −
rpoC1 · ON858908.1 · 20,829–23,662 bp · −
rpoB · ON858908.1 · 23,689–26,901 bp · −
psbM · ON858908.1 · 29,406–29,510 bp · −
trnD-GUC · ON858908.1 · 30,029–30,102 bp · −
trnY-GUA · ON858908.1 · 30,213–30,296 bp · −
trnE-UUC · ON858908.1 · 30,374–30,446 bp · −
trnS-UGA · ON858908.1 · 35,120–35,212 bp · −
trnfM-CAU · ON858908.1 · 36,247–36,320 bp · −
rps14 · ON858908.1 · 36,466–36,768 bp · −
psaB · ON858908.1 · 36,891–39,095 bp · −
psaA · ON858908.1 · 39,121–41,373 bp · −
ycf3 · ON858908.1 · 42,147–44,094 bp · −
rps4 · ON858908.1 · 45,341–45,946 bp · −
trnT-UGU · ON858908.1 · 46,360–46,432 bp · −
ndhJ · ON858908.1 · 48,706–49,182 bp · −
ndhK · ON858908.1 · 49,293–49,970 bp · −
ndhC · ON858908.1 · 50,022–50,384 bp · −
trnV-UAC · ON858908.1 · 51,347–52,003 bp · −
atpE · ON858908.1 · 52,457–52,858 bp · −
atpB · ON858908.1 · 52,855–54,351 bp · −
psbJ · ON858908.1 · 64,068–64,190 bp · −
psbL · ON858908.1 · 64,325–64,441 bp · −
psbF · ON858908.1 · 64,465–64,584 bp · −
psbE · ON858908.1 · 64,599–64,850 bp · −
trnW-CCA · ON858908.1 · 66,249–66,322 bp · −
trnP-UGG · ON858908.1 · 66,491–66,564 bp · −
rpl20 · ON858908.1 · 68,349–68,735 bp · −
rps12 · ON858908.1 · 69,460–69,573 bp · −
rps12 · ON858908.1 · 96,865–97,657 bp · −
clpP · ON858908.1 · 69,692–71,606 bp · −
psbN · ON858908.1 · 73,956–74,087 bp · −
rpoA · ON858908.1 · 77,461–78,468 bp · −
rps11 · ON858908.1 · 78,540–78,956 bp · −
rpl36 · ON858908.1 · 79,072–79,185 bp · −
infA · ON858908.1 · 79,281–79,514 bp · −
rps8 · ON858908.1 · 79,641–80,045 bp · −
rpl14 · ON858908.1 · 80,228–80,596 bp · −
rpl16 · ON858908.1 · 80,730–81,997 bp · −
rps3 · ON858908.1 · 82,141–82,803 bp · −
rpl22 · ON858908.1 · 82,788–83,261 bp · −
rps19 · ON858908.1 · 83,326–83,604 bp · −
rpl2 · ON858908.1 · 83,672–85,150 bp · −
rpl23 · ON858908.1 · 85,169–85,450 bp · −
trnI-CAU · ON858908.1 · 85,616–85,689 bp · −
trnL-CAA · ON858908.1 · 93,214–93,294 bp · −
ndhB · ON858908.1 · 93,866–96,073 bp · −
rps7 · ON858908.1 · 96,344–96,811 bp · −
trnN-GUU · ON858908.1 · 107,811–107,882 bp · −
ndhF · ON858908.1 · 109,248–111,479 bp · −
ndhD · ON858908.1 · 114,254–115,783 bp · −
psaC · ON858908.1 · 115,874–116,119 bp · −
ndhE · ON858908.1 · 116,375–116,680 bp · −
ndhG · ON858908.1 · 116,895–117,425 bp · −
ndhI · ON858908.1 · 117,784–118,290 bp · −
ndhA · ON858908.1 · 118,371–120,493 bp · −
ndhH · ON858908.1 · 120,495–121,676 bp · −
rps15 · ON858908.1 · 121,791–122,063 bp · −
ycf1 · ON858908.1 · 122,493–128,015 bp · −
trnR-ACG · ON858908.1 · 128,991–129,064 bp · −
rrn5 · ON858908.1 · 129,308–129,428 bp · −
rrn4.5 · ON858908.1 · 129,684–129,786 bp · −
rrn23 · ON858908.1 · 129,885–132,695 bp · −
trnA-UGC · ON858908.1 · 132,867–133,745 bp · −
trnI-GAU · ON858908.1 · 133,810–134,828 bp · −
rrn16 · ON858908.1 · 135,126–136,616 bp · −
trnV-GAC · ON858908.1 · 136,843–136,914 bp · −
ycf15 · ON858908.1 · 143,286–143,435 bp · −
ycf2 · ON858908.1 · 143,625–150,455 bp · −
psbK · ON858908.1 · 7,343–7,528 bp · +
psbI · ON858908.1 · 7,916–8,026 bp · +
trnG-UCC · ON858908.1 · 9,037–9,796 bp · +
trnR-UCU · ON858908.1 · 9,987–10,058 bp · +
trnC-GCA · ON858908.1 · 28,091–28,161 bp · +
petN · ON858908.1 · 28,324–28,413 bp · +
trnT-GGU · ON858908.1 · 31,056–31,127 bp · +
psbD · ON858908.1 · 32,454–33,515 bp · +
psbC · ON858908.1 · 33,463–34,884 bp · +
psbZ · ON858908.1 · 35,553–35,741 bp · +
trnG-GCC · ON858908.1 · 35,986–36,056 bp · +
trnS-GGA · ON858908.1 · 44,958–45,044 bp · +
trnL-UAA · ON858908.1 · 47,108–47,672 bp · +
trnF-GAA · ON858908.1 · 47,966–48,038 bp · +
trnM-CAU · ON858908.1 · 52,184–52,256 bp · +
rbcL · ON858908.1 · 55,143–56,576 bp · +
accD · ON858908.1 · 57,281–58,762 bp · +
psaI · ON858908.1 · 59,462–59,572 bp · +
ycf4 · ON858908.1 · 60,019–60,573 bp · +
cemA · ON858908.1 · 61,164–61,853 bp · +
petA · ON858908.1 · 62,068–63,030 bp · +
petL · ON858908.1 · 65,743–65,838 bp · +
petG · ON858908.1 · 66,013–66,126 bp · +
psaJ · ON858908.1 · 66,846–66,980 bp · +
rpl33 · ON858908.1 · 67,442–67,642 bp · +
rps18 · ON858908.1 · 67,809–68,114 bp · +
rps12 · ON858908.1 · 138,582–139,374 bp · +
psbB · ON858908.1 · 72,079–73,605 bp · +
psbT · ON858908.1 · 73,789–73,890 bp · +
psbH · ON858908.1 · 74,193–74,411 bp · +
petB · ON858908.1 · 74,537–75,903 bp · +
petD · ON858908.1 · 76,092–77,284 bp · +
ycf2 · ON858908.1 · 85,784–92,614 bp · +
ycf15 · ON858908.1 · 92,804–92,953 bp · +
trnV-GAC · ON858908.1 · 99,325–99,396 bp · +
rrn16 · ON858908.1 · 99,623–101,113 bp · +
trnI-GAU · ON858908.1 · 101,411–102,429 bp · +
trnA-UGC · ON858908.1 · 102,494–103,372 bp · +
rrn23 · ON858908.1 · 103,544–106,354 bp · +
rrn4.5 · ON858908.1 · 106,453–106,555 bp · +
rrn5 · ON858908.1 · 106,811–106,931 bp · +
trnR-ACG · ON858908.1 · 107,175–107,248 bp · +
ycf1 · ON858908.1 · 108,224–109,354 bp · +
rpl32 · ON858908.1 · 111,947–112,117 bp · +
trnL-UAG · ON858908.1 · 112,882–112,961 bp · +
ccsA · ON858908.1 · 113,050–114,021 bp · +
trnN-GUU · ON858908.1 · 128,357–128,428 bp · +
rps7 · ON858908.1 · 139,428–139,895 bp · +
ndhB · ON858908.1 · 140,166–142,373 bp · +
trnL-CAA · ON858908.1 · 142,945–143,025 bp · +
trnI-CAU · ON858908.1 · 150,550–150,623 bp · +
rpl23 · ON858908.1 · 150,789–151,070 bp · +
rpl2 · ON858908.1 · 151,089–152,567 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Isodon shikokianus var. occidentalis
ANNOTATED PLASTOME
ON858908.1
152,677 bp · 132 genes
Gene function
Transfer RNA
Photosystem II
Other
ATP synthase
Ribosomal protein
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38169 76338 114508 152677 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
133 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 11 85 75 Locate
psbA gene − 393 1451 1059 Locate
trnK-UUU gene − 1683 4263 2581 Locate
matK gene − 2003 3523 1521 Locate
trnQ-UUG gene − 6878 6949 72 Locate
psbK gene + 7343 7528 186 Locate
psbI gene + 7916 8026 111 Locate
trnS-GCU gene − 8182 8269 88 Locate
trnG-UCC gene + 9037 9796 760 Locate
trnR-UCU gene + 9987 10058 72 Locate
atpA gene − 10162 11685 1524 Locate
atpF gene − 11797 13043 1247 Locate
atpH gene − 13341 13586 246 Locate
atpI gene − 14588 15331 744 Locate
rps2 gene − 15557 16267 711 Locate
rpoC2 gene − 16483 20664 4182 Locate
rpoC1 gene − 20829 23662 2834 Locate
rpoB gene − 23689 26901 3213 Locate
trnC-GCA gene + 28091 28161 71 Locate
petN gene + 28324 28413 90 Locate
psbM gene − 29406 29510 105 Locate
trnD-GUC gene − 30029 30102 74 Locate
trnY-GUA gene − 30213 30296 84 Locate
trnE-UUC gene − 30374 30446 73 Locate
trnT-GGU gene + 31056 31127 72 Locate
psbD gene + 32454 33515 1062 Locate
psbC gene + 33463 34884 1422 Locate
trnS-UGA gene − 35120 35212 93 Locate
psbZ gene + 35553 35741 189 Locate
trnG-GCC gene + 35986 36056 71 Locate
trnfM-CAU gene − 36247 36320 74 Locate
rps14 gene − 36466 36768 303 Locate
psaB gene − 36891 39095 2205 Locate
psaA gene − 39121 41373 2253 Locate
ycf3 gene − 42147 44094 1948 Locate
trnS-GGA gene + 44958 45044 87 Locate
rps4 gene − 45341 45946 606 Locate
trnT-UGU gene − 46360 46432 73 Locate
trnL-UAA gene + 47108 47672 565 Locate
trnF-GAA gene + 47966 48038 73 Locate
ndhJ gene − 48706 49182 477 Locate
ndhK gene − 49293 49970 678 Locate
ndhC gene − 50022 50384 363 Locate
trnV-UAC gene − 51347 52003 657 Locate
trnM-CAU gene + 52184 52256 73 Locate
atpE gene − 52457 52858 402 Locate
atpB gene − 52855 54351 1497 Locate
rbcL gene + 55143 56576 1434 Locate
accD gene + 57281 58762 1482 Locate
psaI gene + 59462 59572 111 Locate
ycf4 gene + 60019 60573 555 Locate
cemA gene + 61164 61853 690 Locate
petA gene + 62068 63030 963 Locate
psbJ gene − 64068 64190 123 Locate
psbL gene − 64325 64441 117 Locate
psbF gene − 64465 64584 120 Locate
psbE gene − 64599 64850 252 Locate
petL gene + 65743 65838 96 Locate
petG gene + 66013 66126 114 Locate
trnW-CCA gene − 66249 66322 74 Locate
trnP-UGG gene − 66491 66564 74 Locate
psaJ gene + 66846 66980 135 Locate
rpl33 gene + 67442 67642 201 Locate
rps18 gene + 67809 68114 306 Locate
rpl20 gene − 68349 68735 387 Locate
rps12 gene − 69460 69573 114 Locate
clpP gene − 69692 71606 1915 Locate
psbB gene + 72079 73605 1527 Locate
psbT gene + 73789 73890 102 Locate
psbN gene − 73956 74087 132 Locate
psbH gene + 74193 74411 219 Locate
petB gene + 74537 75903 1367 Locate
petD gene + 76092 77284 1193 Locate
rpoA gene − 77461 78468 1008 Locate
rps11 gene − 78540 78956 417 Locate
rpl36 gene − 79072 79185 114 Locate
infA gene − 79281 79514 234 Locate
rps8 gene − 79641 80045 405 Locate
rpl14 gene − 80228 80596 369 Locate
rpl16 gene − 80730 81997 1268 Locate
rps3 gene − 82141 82803 663 Locate
rpl22 gene − 82788 83261 474 Locate
rps19 gene − 83326 83604 279 Locate
rpl2 gene − 83672 85150 1479 Locate
rpl23 gene − 85169 85450 282 Locate
trnI-CAU gene − 85616 85689 74 Locate
ycf2 gene + 85784 92614 6831 Locate
ycf15 gene + 92804 92953 150 Locate
trnL-CAA gene − 93214 93294 81 Locate
ndhB gene − 93866 96073 2208 Locate
rps7 gene − 96344 96811 468 Locate
rps12 gene − 96865 97657 793 Locate
trnV-GAC gene + 99325 99396 72 Locate
rrn16 gene + 99623 101113 1491 Locate
trnI-GAU gene + 101411 102429 1019 Locate
trnA-UGC gene + 102494 103372 879 Locate
rrn23 gene + 103544 106354 2811 Locate
rrn4.5 gene + 106453 106555 103 Locate
rrn5 gene + 106811 106931 121 Locate
trnR-ACG gene + 107175 107248 74 Locate
trnN-GUU gene − 107811 107882 72 Locate
ycf1 gene + 108224 109354 1131 Locate
ndhF gene − 109248 111479 2232 Locate
rpl32 gene + 111947 112117 171 Locate
trnL-UAG gene + 112882 112961 80 Locate
ccsA gene + 113050 114021 972 Locate
ndhD gene − 114254 115783 1530 Locate
psaC gene − 115874 116119 246 Locate
ndhE gene − 116375 116680 306 Locate
ndhG gene − 116895 117425 531 Locate
ndhI gene − 117784 118290 507 Locate
ndhA gene − 118371 120493 2123 Locate
ndhH gene − 120495 121676 1182 Locate
rps15 gene − 121791 122063 273 Locate
ycf1 gene − 122493 128015 5523 Locate
trnN-GUU gene + 128357 128428 72 Locate
trnR-ACG gene − 128991 129064 74 Locate
rrn5 gene − 129308 129428 121 Locate
rrn4.5 gene − 129684 129786 103 Locate
rrn23 gene − 129885 132695 2811 Locate
trnA-UGC gene − 132867 133745 879 Locate
trnI-GAU gene − 133810 134828 1019 Locate
rrn16 gene − 135126 136616 1491 Locate
trnV-GAC gene − 136843 136914 72 Locate
rps12 gene + 138582 139374 793 Locate
rps7 gene + 139428 139895 468 Locate
ndhB gene + 140166 142373 2208 Locate
trnL-CAA gene + 142945 143025 81 Locate
ycf15 gene − 143286 143435 150 Locate
ycf2 gene − 143625 150455 6831 Locate
trnI-CAU gene + 150550 150623 74 Locate
rpl23 gene + 150789 151070 282 Locate
rpl2 gene + 151089 152567 1479 Locate
Status Available
Accession ON858908.1
Length 152,677 bp
GC content 37.6%
Annotated genes 132
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Atp Synthase 6 Ribosomal Protein 25 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources